Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0100 Marchantia polymorpha HOM05D003121 ORTHO05D003535 5.3e-168 594.3 317 100.0
SEGI_06864 Sequoiadendron giganteum HOM05D003121 ORTHO05D003535 9.7e-53 211.5 313 45.0
Pp3c8_9650 Physcomitrium patens HOM05D003121 ORTHO05D003535 5.3e-51 205.7 279 46.2
ATR0661G016 Amborella trichopoda HOM05D003121 ORTHO05D003535 1.7e-49 200.7 302 47.0
Hund00013 Selenicereus undatus HOM05D003121 ORTHO05D003535 6.5e-49 198.7 301 44.9
AagrBONN_evm.TU.Sc2ySwM_362.2486 Anthoceros agrestis HOM05D003121 ORTHO05D003535 8.5e-49 198.4 359 41.8
Migut.N01332 Erythranthe guttata HOM05D003121 ORTHO05D003535 5.5e-48 195.7 307 45.0
Nn5g27768 Nelumbo nucifera HOM05D003121 ORTHO05D003535 1.2e-47 194.5 308 44.8
MSTRG.27630 Avicennia marina HOM05D003121 ORTHO05D003535 6.1e-47 192.2 307 43.3
Nitab4.5_0002341g0030 Nicotiana tabacum HOM05D003121 ORTHO05D003535 1.4e-46 191.0 313 44.1
CARHR189980 Cardamine hirsuta HOM05D003121 ORTHO05D003535 3.0e-46 189.9 300 45.0
CDE02G2638 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 3.9e-46 189.5 307 43.6
Peaxi162Scf00793g00345 Petunia axillaris HOM05D003121 ORTHO05D003535 3.9e-46 189.5 309 43.4
RcHm_v2.0_Chr6g0278841 Rosa chinensis HOM05D003121 ORTHO05D003535 5.2e-46 189.1 305 42.3
Cc09_g10310 Coffea canephora HOM05D003121 ORTHO05D003535 8.8e-46 188.3 310 43.5
Sed0021457 Sechium edule HOM05D003121 ORTHO05D003535 1.1e-45 188.0 304 43.8
FvH4_2g15640 Fragaria vesca HOM05D003121 ORTHO05D003535 1.5e-45 187.6 304 41.4
TAR625G0403 Trochodendron aralioides HOM05D003121 ORTHO05D003535 1.5e-45 187.6 314 45.2
GSVIVG01037045001 Vitis vinifera HOM05D003121 ORTHO05D003535 1.5e-45 187.6 304 42.8
Sopen01g035570 Solanum pennellii HOM05D003121 ORTHO05D003535 3.3e-45 186.4 307 44.3
CAN.G756.31 Capsicum annuum HOM05D003121 ORTHO05D003535 4.4e-45 186.0 317 43.5
HanXRQChr10g0298091 Helianthus annuus HOM05D003121 ORTHO05D003535 4.4e-45 186.0 309 42.7
Lsat_1_v5_gn_4_72000 Lactuca sativa HOM05D003121 ORTHO05D003535 4.4e-45 186.0 309 42.4
PGSC0003DMG401001724 Solanum tuberosum HOM05D003121 ORTHO05D003535 4.4e-45 186.0 307 44.3
Solyc01g088730.3 Solanum lycopersicum HOM05D003121 ORTHO05D003535 9.7e-45 184.9 307 44.3
CsaV3_7G001220 Cucumis sativus L. HOM05D003121 ORTHO05D003535 1.3e-44 184.5 304 41.8
AUR62013002 Chenopodium quinoa HOM05D003121 ORTHO05D003535 1.7e-44 184.1 312 40.7
Nitab4.5_0000563g0090 Nicotiana tabacum HOM05D003121 ORTHO05D003535 1.7e-44 184.1 308 44.5
Actinidia39167 Actinidia chinensis HOM05D003121 ORTHO05D003535 2.2e-44 183.7 308 44.2
DCAR_022799 Daucus carota HOM05D003121 ORTHO05D003535 2.2e-44 183.7 302 42.7
AUR62010012 Chenopodium quinoa HOM05D003121 ORTHO05D003535 3.7e-44 183.0 302 41.4
Dinv41919 Davidia involucrata HOM05D003121 ORTHO05D003535 3.7e-44 183.0 309 43.7
ClCG02G003910 Citrullus lanatus HOM05D003121 ORTHO05D003535 4.8e-44 182.6 302 41.7
Eucgr.G01791 Eucalyptus grandis HOM05D003121 ORTHO05D003535 4.8e-44 182.6 304 43.1
QL11p052350 Quercus lobata HOM05D003121 ORTHO05D003535 4.8e-44 182.6 305 42.0
Thhalv10004704m.g Eutrema salsugineum HOM05D003121 ORTHO05D003535 8.2e-44 181.8 300 42.7
FAN24G0024 Fragaria x ananassa HOM05D003121 ORTHO05D003535 8.2e-44 181.8 298 41.3
Aa31LG10G14410 Aethionema arabicum HOM05D003121 ORTHO05D003535 1.1e-43 181.4 300 43.3
Ciclev10030221m.g Citrus clementina HOM05D003121 ORTHO05D003535 1.1e-43 181.4 303 42.6
Hma1.2p1_0032F.1_g019220 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 1.8e-43 180.6 306 43.8
Sp2g23600 Schrenkiella parvula HOM05D003121 ORTHO05D003535 1.8e-43 180.6 299 43.5
EL10Ac9g21341 Beta vulgaris HOM05D003121 ORTHO05D003535 2.4e-43 180.3 317 42.0
C07p43950 Brassica napus HOM05D003121 ORTHO05D003535 3.1e-43 179.9 312 41.7
SGA_v2.0_scaffold195G40810 Striga asiatica HOM05D003121 ORTHO05D003535 4.1e-43 179.5 309 44.7
FAN20G1288 Fragaria x ananassa HOM05D003121 ORTHO05D003535 5.3e-43 179.1 298 40.9
ECA234G0462 Erigeron canadensis HOM05D003121 ORTHO05D003535 2.0e-42 177.2 307 41.4
TAR376G0768 Trochodendron aralioides HOM05D003121 ORTHO05D003535 2.0e-42 177.2 311 42.8
Carub.0006s2137 Capsella rubella HOM05D003121 ORTHO05D003535 2.6e-42 176.8 300 42.0
A06p34540 Brassica napus HOM05D000059 ORTHO05D003535 3.5e-42 176.4 305 42.6
Prupe.8G168900 Prunus persica HOM05D003121 ORTHO05D003535 3.5e-42 176.4 308 39.9
BraA06t26383Z Brassica rapa HOM05D003121 ORTHO05D003535 5.9e-42 175.6 304 42.4
THA.LOC104819658 Tarenaya hassleriana HOM05D003121 ORTHO05D003535 5.9e-42 175.6 309 41.4
BolC7t44923H Brassica oleracea HOM05D003121 ORTHO05D003535 1.0e-41 174.9 307 41.7
AT5G23590 Arabidopsis thaliana HOM05D003121 ORTHO05D003535 1.3e-41 174.5 300 42.0
AUR62015153 Chenopodium quinoa HOM05D003121 ORTHO05D003535 2.2e-41 173.7 302 39.7
Gohir.A01G170400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 2.2e-41 173.7 308 41.9
PGR042G3155 Punica granatum HOM05D003121 ORTHO05D003535 2.2e-41 173.7 300 42.3
Haze_00809 Corylus avellana HOM05D003121 ORTHO05D003535 2.9e-41 173.3 303 42.2
Duzib052G0361 Durio zibethinus HOM05D003121 ORTHO05D003535 2.9e-41 173.3 304 43.1
Hma1.2p1_0163F.1_g072700 Hydrangea macrophylla HOM05D003121 ORTHO05D003535 2.9e-41 173.3 300 44.0
EL10Ac6g13967 Beta vulgaris HOM05D003121 ORTHO05D003535 5.0e-41 172.6 307 42.0
Gorai.002G200100 Gossypium raimondii HOM05D003121 ORTHO05D003535 5.0e-41 172.6 303 41.9
Gohir.D01G161400 Gossypium hirsutum HOM05D003121 ORTHO05D003535 6.5e-41 172.2 302 42.4
Manes.15G059200 Manihot esculenta HOM05D003121 ORTHO05D003535 6.5e-41 172.2 301 44.2
AL6G34890 Arabidopsis lyrata HOM05D003121 ORTHO05D003535 1.9e-40 170.6 300 41.3
arahy.Tifrunner.gnm1.ann1.TJ1SRC Arachis hypogaea HOM05D003121 ORTHO05D003535 3.2e-40 169.9 308 40.6
MELO3C013333.2 Cucumis melo HOM05D003121 ORTHO05D003535 5.5e-40 169.1 304 39.8
Thecc.02G055800 Theobroma cacao HOM05D003121 ORTHO05D003535 7.2e-40 168.7 303 42.6
CiPaw.02G071300 Carya illinoinensis HOM05D003121 ORTHO05D003535 1.6e-39 167.5 313 40.6
unitig_746.g26872 Utricularia gibba HOM05D003121 ORTHO05D003535 1.6e-39 167.5 316 41.1
Rhsim01G0025300 Rhododendron simsii HOM05D003121 ORTHO05D003535 2.1e-39 167.2 303 41.3
MD05G1124900 Malus domestica HOM05D003121 ORTHO05D003535 2.7e-39 166.8 306 39.9
PSO541G2003 Papaver somniferum HOM05D003121 ORTHO05D003535 2.7e-39 166.8 306 41.8
Ca_03297_v3 Cicer arietinum L. HOM05D003121 ORTHO05D003535 3.6e-39 166.4 306 39.9
arahy.Tifrunner.gnm1.ann1.LP37DI Arachis hypogaea HOM05D003121 ORTHO05D003535 8.0e-39 165.2 302 40.7
CSS0021302 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 8.0e-39 165.2 302 39.7
Ah.01g023230 Amaranthus hybridus HOM05D003121 ORTHO05D003535 1.0e-38 164.9 315 39.0
COL.COLO4_17374 Corchorus olitorius HOM05D003121 ORTHO05D003535 4.0e-38 162.9 299 42.5
CDE09G1210 Ceratophyllum demersum HOM05D003121 ORTHO05D003535 6.7e-38 162.2 256 44.9
VMungo0720G1452 Vigna mungo HOM05D003121 ORTHO05D003535 8.8e-38 161.8 299 39.5
Psat6g232680 Pisum sativum HOM05D003121 ORTHO05D003535 1.5e-37 161.0 307 40.7
Medtr1g112910 Medicago truncatula HOM05D003121 ORTHO05D003535 2.0e-37 160.6 298 40.9
TWI60G0855 Tripterygium wilfordii HOM05D003121 ORTHO05D003535 4.4e-37 159.5 307 40.7
Sed0012540 Sechium edule HOM05D003121 ORTHO05D003535 9.7e-37 158.3 304 37.8
CBR_g49670 Chara braunii HOM05D002303 ORTHO05D007639 3.7e-36 156.4 345 36.5
PSO675G0341 Papaver somniferum HOM05D003121 ORTHO05D003535 6.3e-36 155.6 306 39.2
Glyma.20G106400 Glycine max HOM05D003121 ORTHO05D003535 4.1e-35 152.9 306 38.9
Lalb_Chr06g0163731 Lupinus albus HOM05D003121 ORTHO05D003535 5.3e-35 152.5 312 38.5
Sc14g0002330 Simmondsia chinensis HOM05D003121 ORTHO05D003535 7.0e-35 152.1 241 44.4
vmacro13056 Vaccinium macrocarpon HOM05D003121 ORTHO05D003535 1.6e-34 151.0 302 38.1
Potri.009G138100 Populus trichocarpa HOM05D003121 ORTHO05D003535 2.0e-34 150.6 307 37.8
Actinidia32029 Actinidia chinensis HOM05D003121 ORTHO05D003535 2.7e-34 150.2 282 42.9
Lsat_1_v5_gn_4_71980 Lactuca sativa HOM05D003121 ORTHO05D003535 4.5e-34 149.4 293 39.2
Lj5g0004060 Lotus japonicus HOM05D003121 ORTHO05D003535 1.0e-33 148.3 307 39.1
Phvul.007G017900 Phaseolus vulgaris HOM05D003121 ORTHO05D003535 5.0e-33 146.0 306 37.9
DCAR_020880 Daucus carota HOM05D003121 ORTHO05D003535 6.5e-33 145.6 253 41.1
Sabra09G0107000 Salix brachista HOM05D003121 ORTHO05D003535 4.2e-32 142.9 301 37.2
SMO364G0026 Selaginella moellendorffii HOM05D003121 ORTHO05D003535 9.4e-32 141.7 324 37.3
HPP92_007329 Vanilla planifolia HOM05D003121 ORTHO05D003535 2.1e-31 140.6 311 36.3
Lj5P177T42 Lonicera japonica HOM05D003121 ORTHO05D003535 3.6e-31 139.8 240 42.1
TPR.G2486 Trifolium pratense HOM05D003121 ORTHO05D003535 8.0e-31 138.7 306 36.9
Eucgr.L03152 Eucalyptus grandis HOM05D003121 ORTHO05D003535 4.0e-30 136.3 258 39.5
Glyma.10G283300 Glycine max HOM05D003121 ORTHO05D003535 4.0e-30 136.3 306 36.9
BcaNung05203 Brassica carinata HOM05D003121 ORTHO05D003535 6.8e-30 135.6 307 36.8
CiPaw.01G132000 Carya illinoinensis HOM05D003121 ORTHO05D003535 1.3e-28 131.3 264 41.3
PRCOL_00003164 Prasinoderma coloniale HOM05D003121 ORTHO05D003535 8.3e-28 128.6 339 34.5
MBI15_g18375_MAGBIO Magnolia biondii HOM05D000140 ORTHO05D000087 3.5e-26 123.2 302 34.8
MCO05G385 Micromonas commoda HOM05D003121 ORTHO05D003535 4.2e-24 116.3 287 37.3
Zm00001eb002940 Zea mays HOM05D003121 ORTHO05D003535 4.4e-21 106.3 241 34.9
ECA236G3931 Erigeron canadensis HOM05D003121 ORTHO05D003535 2.2e-20 104.0 307 32.2
Dinv40527 Davidia involucrata HOM05D003121 ORTHO05D003535 2.4e-19 100.5 209 39.7
COL.COLO4_32987 Corchorus olitorius HOM05D003121 ORTHO05D003535 3.1e-19 100.1 230 37.8
SHI04584 Sapria himalayana HOM05D003121 ORTHO05D003535 5.4e-19 99.4 307 29.6
MBI07_g07805_MAGBIO Magnolia biondii HOM05D003121 ORTHO05D003535 1.6e-18 97.8 208 38.0
Os03g0136800 Oryza sativa ssp. japonica HOM05D003121 ORTHO05D003535 2.0e-18 97.4 311 31.8
CSS0049142 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 4.5e-18 96.3 298 30.2
Cre07.g348900 Chlamydomonas reinhardtii HOM05D003121 ORTHO05D003535 1.0e-17 95.1 277 31.8
Oeu028963.1 Olea europaea HOM05D003121 ORTHO05D003535 3.8e-17 93.2 151 44.4
Aqoxy6G01979 Aquilegia oxysepala HOM05D003121 ORTHO05D003535 2.5e-16 90.5 223 36.8
Cpa.g.sc14.232 Carica papaya HOM05D003121 ORTHO05D003535 7.3e-16 89.0 296 29.7
PGSC0003DMG401018151 Solanum tuberosum HOM05D003121 ORTHO05D003535 9.5e-16 88.6 265 32.8
Peaxi162Scf00444g00017 Petunia axillaris HOM05D003121 ORTHO05D003535 2.8e-15 87.0 232 34.9
DCAR_029977 Daucus carota HOM05D003121 ORTHO05D003535 6.1e-15 85.9 279 31.9
PGSC0003DMG400015012 Solanum tuberosum HOM05D003121 ORTHO05D003535 1.0e-14 85.1 259 34.4
PSO675G3506 Papaver somniferum HOM05D003121 ORTHO05D003535 2.0e-13 80.9 163 37.4
Solyc12g056890.1 Solanum lycopersicum HOM05D003121 ORTHO05D003535 2.0e-13 80.9 257 33.5
SGA_v2.0_scaffold207G41938 Striga asiatica HOM05D003121 ORTHO05D003535 2.0e-13 80.9 149 43.0
CSS0045143 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 3.4e-13 80.1 269 30.5
Actinidia21476 Actinidia chinensis HOM05D003121 ORTHO05D003535 9.8e-13 78.6 215 37.2
CSS0039474 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 1.7e-12 77.8 306 29.4
Sopen04g007110 Solanum pennellii HOM05D003121 ORTHO05D003535 2.9e-12 77.0 255 32.5
Solyc04g015090.3 Solanum lycopersicum HOM05D003121 ORTHO05D003535 1.4e-11 74.7 257 32.3
BcaB07g29983 Brassica carinata HOM05D000059 ORTHO05D000128 1.8e-11 74.3 257 28.0
PSO732G0110 Papaver somniferum HOM05D003121 ORTHO05D003535 3.2e-11 73.6 163 35.6
PSO339G5273 Papaver somniferum HOM05D003121 ORTHO05D003535 4.1e-11 73.2 248 29.8
ECA240G3367 Erigeron canadensis HOM05D000003 ORTHO05D000004 1.3e-09 68.2 260 29.6
FAN13G2513 Fragaria x ananassa HOM05D003121 ORTHO05D003535 3.0e-09 67.0 156 32.1
PSO210G5475 Papaver somniferum HOM05D003121 ORTHO05D003535 8.6e-09 65.5 100 41.0
CAN.G475.3 Capsicum annuum HOM05D003121 ORTHO05D003535 3.3e-08 63.5 91 45.1
CANSAT80G1118 Cannabis sativa HOM05D003121 ORTHO05D003535 4.3e-08 63.2 123 35.8
Cre09.g389550 Chlamydomonas reinhardtii HOM05D003863 ORTHO05D004372 5.6e-08 62.8 72 47.2
FvH4_3g08280 Fragaria vesca HOM05D003121 ORTHO05D003535 9.5e-08 62.0 83 45.8
FAN11G1820 Fragaria x ananassa HOM05D003121 ORTHO05D003535 9.5e-08 62.0 83 45.8
FAN16G1234 Fragaria x ananassa HOM05D003121 ORTHO05D003535 9.5e-08 62.0 83 45.8
CSS0005739 Camellia sinensis var. sinensis HOM05D003121 ORTHO05D003535 2.1e-07 60.8 150 34.7
FAN11G3129 Fragaria x ananassa HOM05D003121 ORTHO05D003535 2.1e-07 60.8 74 45.9
PSO223G0054 Papaver somniferum HOM05D003121 ORTHO05D003535 2.1e-07 60.8 135 37.8
FvH4_6g03220 Fragaria vesca HOM05D003121 ORTHO05D003535 2.8e-07 60.5 69 47.8
FvH4_3g06550 Fragaria vesca HOM05D003121 ORTHO05D003535 3.6e-07 60.1 68 48.5
BcaC03g18020 Brassica carinata HOM05D003121 ORTHO05D003535 6.2e-07 59.3 78 43.6
FAN02G1177 Fragaria x ananassa HOM05D003121 ORTHO05D003535 6.2e-07 59.3 69 46.4
C02p60790 Brassica napus HOM05D003121 ORTHO05D003535 8.0e-07 58.9 69 43.5
AUR62010208 Chenopodium quinoa HOM05D003121 ORTHO05D003535 8.0e-07 58.9 70 45.7
FAN21G0422 Fragaria x ananassa HOM05D003121 ORTHO05D003535 1.1e-06 58.5 74 45.9
HanXRQChr02g0035631 Helianthus annuus HOM05D003121 ORTHO05D003535 1.1e-06 58.5 112 37.5
PSO223G0083 Papaver somniferum HOM05D003121 ORTHO05D003535 1.1e-06 58.5 135 37.0
FvH4_3g08271 Fragaria vesca HOM05D003121 ORTHO05D003535 2.3e-06 57.4 68 45.6
PSO135G0399 Papaver somniferum HOM05D003121 ORTHO05D003535 2.3e-06 57.4 84 40.5
Sp1g14820 Schrenkiella parvula HOM05D002153 ORTHO05D002137 2.3e-06 57.4 66 50.0
ECA240G2719 Erigeron canadensis HOM05D003121 ORTHO05D003535 3.1e-06 57.0 215 27.9
unitig_736.g22293 Utricularia gibba HOM05D003863 ORTHO05D004372 4.0e-06 56.6 70 45.7
AagrBONN_evm.TU.Sc2ySwM_362.2003 Anthoceros agrestis HOM05D001345 ORTHO05D001190 5.2e-06 56.2 76 40.8
CANSAT78G0282 Cannabis sativa HOM05D003121 ORTHO05D003535 5.2e-06 56.2 114 36.0
DCAR_020020 Daucus carota HOM05D003121 ORTHO05D003535 5.2e-06 56.2 102 40.2
ECA236G2451 Erigeron canadensis HOM05D001345 ORTHO05D001190 5.2e-06 56.2 75 42.7
FAN23G2561 Fragaria x ananassa HOM05D003121 ORTHO05D003535 5.2e-06 56.2 83 42.2
PGSC0003DMG400009335 Solanum tuberosum HOM05D003121 ORTHO05D003535 5.2e-06 56.2 145 37.9
CARHR017140 Cardamine hirsuta HOM05D002153 ORTHO05D002137 6.8e-06 55.8 66 48.5
Cfa014180 Carpinus fangiana HOM05D001345 ORTHO05D001190 6.8e-06 55.8 75 42.7
FvH4_6g03710 Fragaria vesca HOM05D003121 ORTHO05D003535 6.8e-06 55.8 71 45.1
Nitab4.5_0004883g0010 Nicotiana tabacum HOM05D000367 ORTHO05D002159 6.8e-06 55.8 70 45.7
BraA05t22511Z Brassica rapa HOM05D003863 ORTHO05D004372 8.9e-06 55.5 70 44.3
FAN09G3405 Fragaria x ananassa HOM05D003121 ORTHO05D003535 8.9e-06 55.5 71 43.7
Sc18g0005070 Simmondsia chinensis HOM05D001345 ORTHO05D001190 8.9e-06 55.5 75 41.3


User provided reference genes

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