Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0015s0020 Marchantia polymorpha HOM05D004088 ORTHO05D004736 0.0e+00 3291.1 2054 100.0
Mapoly0009s0092 Marchantia polymorpha HOM05D004088 ORTHO05D004736 8.2e-60 237.7 544 33.1
CDE06G1544 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 1.8e-14 87.0 104 45.2
PSO675G0514 Papaver somniferum HOM05D004088 ORTHO05D004736 2.3e-14 86.7 165 33.9
TAR627G0836 Trochodendron aralioides HOM05D004088 ORTHO05D004736 8.9e-14 84.7 159 36.5
Potri.011G164400 Populus trichocarpa HOM05D004088 ORTHO05D004736 1.5e-13 84.0 531 25.8
Atru.chr10.842 Acer truncatum HOM05D004088 ORTHO05D004736 4.4e-13 82.4 256 31.6
Haze_05860 Corylus avellana HOM05D004088 ORTHO05D004736 9.8e-13 81.3 233 32.2
Haze_05865 Corylus avellana HOM05D004088 ORTHO05D004736 9.8e-13 81.3 233 32.2
PSO541G5923 Papaver somniferum HOM05D004088 ORTHO05D004736 1.3e-12 80.9 495 26.5
MELO3C007071.2 Cucumis melo HOM05D004088 ORTHO05D004736 2.2e-12 80.1 832 24.2
Lj2C329T10 Lonicera japonica HOM05D004088 ORTHO05D004736 2.9e-12 79.7 884 21.5
Manes.14G123600 Manihot esculenta HOM05D004088 ORTHO05D004736 3.7e-12 79.3 590 24.9
Sp4g17030 Schrenkiella parvula HOM05D004088 ORTHO05D004736 3.7e-12 79.3 147 34.7
PGSC0003DMG400028032 Solanum tuberosum HOM05D004088 ORTHO05D004736 6.4e-12 78.6 495 25.3
MBI18_g11295_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 8.3e-12 78.2 309 27.8
CSS0022324 Camellia sinensis var. sinensis HOM05D004088 ORTHO05D004736 1.1e-11 77.8 517 25.5
Thecc.06G002600 Theobroma cacao HOM05D004088 ORTHO05D004736 1.1e-11 77.8 577 24.1
BolC3t14642H Brassica oleracea HOM05D004088 ORTHO05D004736 1.4e-11 77.4 335 29.6
Lalb_Chr20g0120071 Lupinus albus HOM05D004088 ORTHO05D004736 1.8e-11 77.0 600 22.5
TWI18G0713 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 1.8e-11 77.0 528 24.4
BcaB07g32665 Brassica carinata HOM05D004088 ORTHO05D004736 2.4e-11 76.6 513 24.0
Sabra16G0316600 Salix brachista HOM05D004088 ORTHO05D004736 3.2e-11 76.3 142 34.5
PGSC0003DMG400021120 Solanum tuberosum HOM05D004088 ORTHO05D004736 3.2e-11 76.3 837 23.8
Peaxi162Scf00395g00111 Petunia axillaris HOM05D004088 ORTHO05D004736 4.1e-11 75.9 733 22.0
Sabra11G0140800 Salix brachista HOM05D004088 ORTHO05D004736 4.1e-11 75.9 581 25.6
Nn3g20183 Nelumbo nucifera HOM05D004088 ORTHO05D004736 5.4e-11 75.5 271 28.0
AagrBONN_evm.TU.Sc2ySwM_117.446 Anthoceros agrestis HOM05D004088 ORTHO05D004736 9.2e-11 74.7 1719 19.9
MD05G1272700 Malus domestica HOM05D004088 ORTHO05D004736 1.2e-10 74.3 578 24.4
MD10G1252800 Malus domestica HOM05D004088 ORTHO05D004736 1.2e-10 74.3 575 23.0
SHI20695 Sapria himalayana HOM05D004088 ORTHO05D004736 2.7e-10 73.2 302 28.1
Lj6g0019238 Lotus japonicus HOM05D004088 ORTHO05D004736 4.6e-10 72.4 54 59.3
SGA_v2.0_scaffold106G30673 Striga asiatica HOM05D004088 ORTHO05D004736 5.9e-10 72.0 581 23.1
CiPaw.10G109300 Carya illinoinensis HOM05D004088 ORTHO05D004736 1.3e-09 70.9 533 25.0
Migut.H01326 Erythranthe guttata HOM05D004088 ORTHO05D004736 1.3e-09 70.9 580 23.8
Hma1.2p1_0067F.1_g036970 Hydrangea macrophylla HOM05D004088 ORTHO05D004736 1.3e-09 70.9 830 24.0
MBI10_g06724_MAGBIO Magnolia biondii HOM05D007562 ORTHO05D009721 1.3e-09 70.9 90 42.2
Carub.0001s2877 Capsella rubella HOM05D004088 ORTHO05D004736 2.3e-09 70.1 356 24.7
unitig_61.g26083 Utricularia gibba HOM05D004088 ORTHO05D004736 2.3e-09 70.1 343 26.8
arahy.Tifrunner.gnm1.ann1.JZ5PNZ Arachis hypogaea HOM05D004088 ORTHO05D004736 3.0e-09 69.7 535 24.1
BcaC05g27074 Brassica carinata HOM05D004088 ORTHO05D004736 3.0e-09 69.7 531 24.1
BolC5t31686H Brassica oleracea HOM05D004088 ORTHO05D004736 3.0e-09 69.7 531 24.1
DCAR_003851 Daucus carota HOM05D004088 ORTHO05D004736 3.0e-09 69.7 435 26.0
MBI02_g32065_MAGBIO Magnolia biondii HOM05D004088 ORTHO05D004736 3.0e-09 69.7 188 32.4
Sed0022133 Sechium edule HOM05D004088 ORTHO05D004736 3.9e-09 69.3 706 23.2
TAR629G1307 Trochodendron aralioides HOM05D007562 ORTHO05D009721 3.9e-09 69.3 102 40.2
Dinv01743 Davidia involucrata HOM05D004088 ORTHO05D004736 5.0e-09 68.9 89 41.6
RcHm_v2.0_Chr5g0016081 Rosa chinensis HOM05D004088 ORTHO05D004736 5.0e-09 68.9 531 23.7
RcHm_v2.0_Chr5g0016211 Rosa chinensis HOM05D004088 ORTHO05D004736 5.0e-09 68.9 503 23.7
arahy.Tifrunner.gnm1.ann1.845J24 Arachis hypogaea HOM05D004088 ORTHO05D004736 6.6e-09 68.6 549 25.0
Prupe.4G090700 Prunus persica HOM05D004088 ORTHO05D004736 8.6e-09 68.2 561 23.0
C05p29550 Brassica napus HOM05D004088 ORTHO05D004736 1.1e-08 67.8 527 24.3
Eucgr.E02503 Eucalyptus grandis HOM05D004088 ORTHO05D004736 1.1e-08 67.8 573 24.3
Sc24g0002610 Simmondsia chinensis HOM05D004088 ORTHO05D004736 1.1e-08 67.8 509 24.4
Aa31LG10G6600 Aethionema arabicum HOM05D004088 ORTHO05D004736 1.5e-08 67.4 350 24.9
Prupe.2G214000 Prunus persica HOM05D007562 ORTHO05D009721 1.5e-08 67.4 127 32.3
VMungo0540G1975 Vigna mungo HOM05D004088 ORTHO05D004736 1.5e-08 67.4 131 32.8
Psat1g167360 Pisum sativum HOM05D004088 ORTHO05D004736 1.9e-08 67.0 426 26.8
Actinidia33710 Actinidia chinensis HOM05D004088 ORTHO05D004736 2.5e-08 66.6 815 23.1
SGA_v2.0_scaffold51G18657 Striga asiatica HOM05D004088 ORTHO05D007693 2.5e-08 66.6 577 23.9
BcaB07g32691 Brassica carinata HOM05D004088 ORTHO05D004736 3.3e-08 66.2 499 24.8
Glyma.09G024600 Glycine max HOM05D004088 ORTHO05D004736 3.3e-08 66.2 550 22.4
Solyc02g069940.4 Solanum lycopersicum HOM05D004088 ORTHO05D004736 3.3e-08 66.2 819 22.6
BcaB07g32689 Brassica carinata HOM05D004088 ORTHO05D004736 4.3e-08 65.9 508 25.2
FAN21G0524 Fragaria x ananassa HOM05D004088 ORTHO05D004736 4.3e-08 65.9 307 27.7
Os12g0612300 Oryza sativa ssp. japonica HOM05D004088 ORTHO05D004736 4.3e-08 65.9 221 27.6
TPR.G26329 Trifolium pratense HOM05D004088 ORTHO05D004736 4.3e-08 65.9 346 23.7
Ciclev10014183m.g Citrus clementina HOM05D004088 ORTHO05D004736 5.6e-08 65.5 258 26.4
CsaV3_6G052390 Cucumis sativus L. HOM05D004088 ORTHO05D004736 5.6e-08 65.5 912 23.2
HanXRQChr14g0430221 Helianthus annuus HOM05D004088 ORTHO05D004736 5.6e-08 65.5 510 24.1
Phvul.006G128000 Phaseolus vulgaris HOM05D004088 ORTHO05D004736 7.3e-08 65.1 552 22.8
QL08p065113 Quercus lobata HOM05D000592 ORTHO05D000900 7.3e-08 65.1 294 26.5
Potri.001G466800 Populus trichocarpa HOM05D004088 ORTHO05D004736 9.5e-08 64.7 505 24.0
Nitab4.5_0004734g0030 Nicotiana tabacum HOM05D004088 ORTHO05D004736 1.2e-07 64.3 455 23.3
Prupe.6G009100 Prunus persica HOM05D004088 ORTHO05D004736 1.2e-07 64.3 250 30.4
Aqoxy1G01241 Aquilegia oxysepala HOM05D007562 ORTHO05D009721 1.6e-07 63.9 54 55.6
FAN25G3211 Fragaria x ananassa HOM05D004088 ORTHO05D004736 1.6e-07 63.9 277 30.7
Sc20g0001880 Simmondsia chinensis HOM05D007562 ORTHO05D009721 1.6e-07 63.9 107 36.4
CANSAT35G2036 Cannabis sativa HOM05D004088 ORTHO05D004736 2.1e-07 63.5 907 23.2
GSVIVG01021660001 Vitis vinifera HOM05D004088 ORTHO05D004736 2.1e-07 63.5 522 23.2
Manes.07G100522 Manihot esculenta HOM05D007562 ORTHO05D004736 2.8e-07 63.2 60 45.0
Sopen02g006710 Solanum pennellii HOM05D004088 ORTHO05D004736 2.8e-07 63.2 626 22.7
Atru.chr12.774 Acer truncatum HOM05D007562 ORTHO05D009721 3.6e-07 62.8 94 37.2
MSTRG.14799 Avicennia marina HOM05D004088 ORTHO05D004736 3.6e-07 62.8 601 22.8
Cc09_g07900 Coffea canephora HOM05D004088 ORTHO05D004736 3.6e-07 62.8 720 24.0
Gohir.A10G004300 Gossypium hirsutum HOM05D004088 ORTHO05D004736 3.6e-07 62.8 716 24.2
CDE03G0099 Ceratophyllum demersum HOM05D004088 ORTHO05D004736 4.7e-07 62.4 502 23.3
BraA09t39116Z Brassica rapa HOM05D004088 ORTHO05D004736 6.2e-07 62.0 521 22.3
Cfa021509 Carpinus fangiana HOM05D007562 ORTHO05D009721 6.2e-07 62.0 105 35.2
ClCG01G025190 Citrullus lanatus HOM05D004088 ORTHO05D004736 6.2e-07 62.0 954 23.0
Haze_16895 Corylus avellana HOM05D007562 ORTHO05D009721 6.2e-07 62.0 102 36.3
RcHm_v2.0_Chr1g0363431 Rosa chinensis HOM05D007562 ORTHO05D009721 6.2e-07 62.0 85 40.0
Ca_00845_v3 Cicer arietinum L. HOM05D004088 ORTHO05D004736 8.0e-07 61.6 428 25.2
Sopen02g019080 Solanum pennellii HOM05D004088 ORTHO05D004736 8.0e-07 61.6 822 22.4
Atru.chr12.749 Acer truncatum HOM05D007562 ORTHO05D009721 1.0e-06 61.2 94 36.2
Actinidia32361 Actinidia chinensis HOM05D004088 ORTHO05D004736 1.0e-06 61.2 891 23.0
Lj2g0025537 Lotus japonicus HOM05D007562 ORTHO05D009721 1.0e-06 61.2 99 35.4
SMO351G0272 Selaginella moellendorffii HOM05D004088 ORTHO05D004736 1.4e-06 60.8 167 26.3
Phvul.004G082400 Phaseolus vulgaris HOM05D007562 ORTHO05D009721 2.3e-06 60.1 100 32.0
HPP92_026552 Vanilla planifolia HOM05D004088 ORTHO05D004736 2.3e-06 60.1 246 26.8
AUR62027558 Chenopodium quinoa HOM05D004088 ORTHO05D004736 3.1e-06 59.7 277 26.4
MD07G1174900 Malus domestica HOM05D007562 ORTHO05D009721 4.0e-06 59.3 93 39.8
QL08p056015 Quercus lobata HOM05D007562 ORTHO05D009721 4.0e-06 59.3 96 37.5
Duzib114G0316 Durio zibethinus HOM05D007562 ORTHO05D009721 6.8e-06 58.5 113 31.9
TWI75G0217 Tripterygium wilfordii HOM05D004088 ORTHO05D004736 6.8e-06 58.5 633 23.9
Ca_04680_v3 Cicer arietinum L. HOM05D007562 ORTHO05D009721 8.9e-06 58.2 109 28.4
Glyma.16G154800 Glycine max HOM05D007562 ORTHO05D009721 8.9e-06 58.2 90 34.4


User provided reference genes

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