Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0191 Marchantia polymorpha HOM05D004323 ORTHO05D005140 6.0e-146 521.2 332 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4471 Anthoceros agrestis HOM05D004323 ORTHO05D005140 2.1e-42 177.2 286 45.1
AagrBONN_evm.TU.Sc2ySwM_117.2431 Anthoceros agrestis HOM05D004323 ORTHO05D005140 3.6e-42 176.4 288 45.1
Cpa.g.sc65.119 Carica papaya HOM05D004323 ORTHO05D005140 1.9e-38 164.1 114 65.8
Thhalv10018840m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 2.7e-37 160.2 173 51.4
SEGI_02231 Sequoiadendron giganteum HOM05D004323 ORTHO05D005140 2.7e-37 160.2 120 65.0
Pp3c21_20610 Physcomitrium patens HOM05D004323 ORTHO05D005140 1.0e-36 158.3 173 50.3
CANSAT01G2279 Cannabis sativa HOM05D004323 ORTHO05D005140 3.0e-36 156.8 162 51.2
vmacro05495 Vaccinium macrocarpon HOM05D004323 ORTHO05D005140 3.3e-35 153.3 169 49.7
Dinv33986 Davidia involucrata HOM05D004323 ORTHO05D005140 5.6e-35 152.5 172 51.2
CARHR064370 Cardamine hirsuta HOM05D004323 ORTHO05D005140 9.5e-35 151.8 296 38.9
Medtr8g105830 Medicago truncatula HOM05D004323 ORTHO05D005140 9.5e-35 151.8 126 57.9
Hund14974 Selenicereus undatus HOM05D004323 ORTHO05D005140 9.5e-35 151.8 114 63.2
Zm00001eb053510 Zea mays HOM05D004323 ORTHO05D005140 9.5e-35 151.8 179 46.9
Ca_17253_v3 Cicer arietinum L. HOM05D004323 ORTHO05D005140 1.2e-34 151.4 126 58.7
AL2G30660 Arabidopsis lyrata HOM05D004323 ORTHO05D005140 1.6e-34 151.0 301 39.5
Psat7g004960 Pisum sativum HOM05D004323 ORTHO05D005140 2.1e-34 150.6 126 58.7
Cfa008584 Carpinus fangiana HOM05D004323 ORTHO05D005140 2.8e-34 150.2 285 38.6
CDE09G0723 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 4.7e-34 149.4 291 38.5
Haze_11028 Corylus avellana HOM05D004323 ORTHO05D005140 4.7e-34 149.4 283 38.2
PSO063G1150 Papaver somniferum HOM05D004323 ORTHO05D005140 6.2e-34 149.1 114 63.2
Hma1.2p1_0500F.1_g166900 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.1e-34 148.7 114 63.2
Hma1.2p1_1820F.1_g304196 Hydrangea macrophylla HOM05D004323 ORTHO05D005140 8.1e-34 148.7 114 63.2
SalBow1G3118 Salvia bowleyana HOM05D004323 ORTHO05D005140 8.1e-34 148.7 176 48.3
Zm00001eb217130 Zea mays HOM05D004323 ORTHO05D005140 8.1e-34 148.7 177 47.5
Lj2C436T13 Lonicera japonica HOM05D004323 ORTHO05D005140 1.1e-33 148.3 114 64.0
AT1G71080 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.4e-33 147.9 298 40.3
EL10Ac5g11852 Beta vulgaris HOM05D004323 ORTHO05D005140 1.4e-33 147.9 113 63.7
PSO782G4339 Papaver somniferum HOM05D004323 ORTHO05D005140 1.4e-33 147.9 114 62.3
PSO063G0228 Papaver somniferum HOM05D004323 ORTHO05D005140 1.8e-33 147.5 114 61.4
CiPaw.05G248000 Carya illinoinensis HOM05D004323 ORTHO05D005140 2.4e-33 147.1 295 37.6
Lj5g0009857 Lotus japonicus HOM05D004323 ORTHO05D005140 2.4e-33 147.1 167 47.9
Nn3g18066 Nelumbo nucifera HOM05D004323 ORTHO05D005140 2.4e-33 147.1 153 51.0
Sp5g26250 Schrenkiella parvula HOM05D004323 ORTHO05D005140 2.4e-33 147.1 297 40.1
Pp3c18_1330 Physcomitrium patens HOM05D004323 ORTHO05D005140 4.0e-33 146.4 298 43.0
TAR622G1143 Trochodendron aralioides HOM05D004323 ORTHO05D005140 4.0e-33 146.4 290 37.9
CsaV3_5G010330 Cucumis sativus L. HOM05D004323 ORTHO05D005140 8.9e-33 145.2 112 59.8
PGSC0003DMG400030599 Solanum tuberosum HOM05D004323 ORTHO05D005140 8.9e-33 145.2 180 46.7
BraA07t31307Z Brassica rapa HOM05D004323 ORTHO05D005140 1.2e-32 144.8 289 38.8
ECA246G3962 Erigeron canadensis HOM05D004323 ORTHO05D005140 1.2e-32 144.8 300 37.7
Prupe.3G151600 Prunus persica HOM05D004323 ORTHO05D005140 1.2e-32 144.8 195 47.2
Sc14g0004810 Simmondsia chinensis HOM05D004323 ORTHO05D005140 1.2e-32 144.8 303 37.0
Carub.0002s1789 Capsella rubella HOM05D004323 ORTHO05D005140 1.5e-32 144.4 297 38.0
HPP92_006392 Vanilla planifolia HOM05D004323 ORTHO05D005140 1.5e-32 144.4 284 37.3
Nitab4.5_0002456g0110 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.6e-32 143.7 114 62.3
Nitab4.5_0003598g0060 Nicotiana tabacum HOM05D004323 ORTHO05D005140 2.6e-32 143.7 114 62.3
Phvul.007G037100 Phaseolus vulgaris HOM05D004323 ORTHO05D005140 2.6e-32 143.7 161 47.2
Sabra10G0085000 Salix brachista HOM05D004323 ORTHO05D005140 2.6e-32 143.7 158 47.5
Solyc02g091270.3 Solanum lycopersicum HOM05D004323 ORTHO05D005140 2.6e-32 143.7 176 48.3
AUR62030721 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.4e-32 143.3 114 64.0
HanXRQChr12g0375961 Helianthus annuus HOM05D004323 ORTHO05D005140 3.4e-32 143.3 297 38.7
Oeu041976.1 Olea europaea HOM05D004323 ORTHO05D005140 3.4e-32 143.3 127 59.8
Sopen02g035890 Solanum pennellii HOM05D004323 ORTHO05D005140 3.4e-32 143.3 113 62.8
GSVIVG01030895001 Vitis vinifera HOM05D004323 ORTHO05D005140 3.4e-32 143.3 303 37.0
Potri.008G127900 Populus trichocarpa HOM05D004323 ORTHO05D005140 4.4e-32 142.9 111 58.6
CSS0029895 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 5.8e-32 142.5 294 38.1
ATR0326G041 Amborella trichopoda HOM05D004323 ORTHO05D005140 7.6e-32 142.1 283 35.7
BolC6t39576H Brassica oleracea HOM05D004323 ORTHO05D005140 7.6e-32 142.1 292 38.7
TWI79G0055 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 7.6e-32 142.1 288 38.5
A07p37500 Brassica napus HOM05D004323 ORTHO05D005140 9.9e-32 141.7 289 38.4
Ciclev10015960m.g Citrus clementina HOM05D004323 ORTHO05D005140 9.9e-32 141.7 287 37.3
Sabra08G0096600 Salix brachista HOM05D004323 ORTHO05D005140 9.9e-32 141.7 161 47.2
TAR629G2255 Trochodendron aralioides HOM05D004323 ORTHO05D005140 1.3e-31 141.4 286 37.1
C06p45200 Brassica napus HOM05D004323 ORTHO05D005140 2.2e-31 140.6 291 38.1
CAN.G625.75 Capsicum annuum HOM05D004323 ORTHO05D005140 2.2e-31 140.6 165 49.7
CBR_g81558 Chara braunii HOM05D004323 ORTHO05D005140 2.9e-31 140.2 126 51.6
Rhsim10G0078500 Rhododendron simsii HOM05D004323 ORTHO05D005140 2.9e-31 140.2 284 36.6
unitig_748.g8745 Utricularia gibba HOM05D004323 ORTHO05D005140 2.9e-31 140.2 113 61.9
SMO268G0019 Selaginella moellendorffii HOM05D004323 ORTHO05D005140 3.8e-31 139.8 294 45.6
Gohir.A07G076100 Gossypium hirsutum HOM05D004323 ORTHO05D005140 4.9e-31 139.4 115 60.9
Prupe.1G322700 Prunus persica HOM05D004323 ORTHO05D005140 4.9e-31 139.4 289 38.4
Aa31LG4G9980 Aethionema arabicum HOM05D004323 ORTHO05D005140 6.4e-31 139.0 285 38.2
Gohir.D07G080600 Gossypium hirsutum HOM05D004323 ORTHO05D005140 6.4e-31 139.0 178 46.1
RcHm_v2.0_Chr4g0440951 Rosa chinensis HOM05D004323 ORTHO05D005140 8.4e-31 138.7 284 38.0
BcaB03g14869 Brassica carinata HOM05D004323 ORTHO05D005140 1.1e-30 138.3 296 37.8
Gorai.001G085700 Gossypium raimondii HOM05D004323 ORTHO05D005140 1.1e-30 138.3 178 46.1
Nn4g24090 Nelumbo nucifera HOM05D004323 ORTHO05D005140 1.1e-30 138.3 280 38.2
Oeu030805.1 Olea europaea HOM05D004323 ORTHO05D005140 1.1e-30 138.3 105 65.7
arahy.Tifrunner.gnm1.ann1.B1S40C Arachis hypogaea HOM05D004323 ORTHO05D005140 1.4e-30 137.9 304 37.2
arahy.Tifrunner.gnm1.ann1.JPDL6B Arachis hypogaea HOM05D004323 ORTHO05D005140 1.4e-30 137.9 304 37.2
BcaC08g46546 Brassica carinata HOM05D004323 ORTHO05D005140 2.4e-30 137.1 290 37.9
Gohir.D11G173500 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.4e-30 137.1 292 37.0
Gorai.007G185800 Gossypium raimondii HOM05D004323 ORTHO05D005140 2.4e-30 137.1 292 37.0
THA.LOC104805595 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 2.4e-30 137.1 116 60.3
Dinv14868 Davidia involucrata HOM05D004323 ORTHO05D005140 3.2e-30 136.7 289 37.7
Duzib133G0462 Durio zibethinus HOM05D004323 ORTHO05D005140 3.2e-30 136.7 289 37.4
FAN07G1710 Fragaria x ananassa HOM05D004323 ORTHO05D005140 3.2e-30 136.7 284 38.0
Dinv19000 Davidia involucrata HOM05D004323 ORTHO05D005140 4.2e-30 136.3 292 39.0
Ah.02g115750 Amaranthus hybridus HOM05D004323 ORTHO05D005140 5.4e-30 136.0 295 36.9
Cc07_g08280 Coffea canephora HOM05D004323 ORTHO05D005140 5.4e-30 136.0 303 37.3
FvH4_4g32210 Fragaria vesca HOM05D004323 ORTHO05D005140 7.1e-30 135.6 284 38.4
FAN12G1900 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.1e-30 135.6 284 38.4
PGR004G1785 Punica granatum HOM05D004323 ORTHO05D005140 7.1e-30 135.6 116 56.9
Eucgr.F02814 Eucalyptus grandis HOM05D004323 ORTHO05D005140 9.2e-30 135.2 143 49.0
Glyma.20G125700 Glycine max HOM05D004323 ORTHO05D005140 9.2e-30 135.2 291 38.1
Atru.chr11.379 Acer truncatum HOM05D004323 ORTHO05D005140 1.2e-29 134.8 297 36.7
FAN22G0457 Fragaria x ananassa HOM05D004323 ORTHO05D005140 1.2e-29 134.8 284 37.3
MD09G1260000 Malus domestica HOM05D004323 ORTHO05D005140 1.2e-29 134.8 179 44.7
Glyma.10G264800 Glycine max HOM05D004323 ORTHO05D005140 1.6e-29 134.4 271 39.1
Manes.15G126000 Manihot esculenta HOM05D004323 ORTHO05D005140 1.6e-29 134.4 292 39.0
Psat7g006200 Pisum sativum HOM05D004323 ORTHO05D005140 1.6e-29 134.4 281 38.8
Thecc.04G123700 Theobroma cacao HOM05D004323 ORTHO05D005140 1.6e-29 134.4 291 36.1
Gohir.A11G167200 Gossypium hirsutum HOM05D004323 ORTHO05D005140 2.1e-29 134.0 292 36.3
Eucgr.C01716 Eucalyptus grandis HOM05D004323 ORTHO05D005140 2.7e-29 133.7 286 38.5
Os01g0507500 Oryza sativa ssp. japonica HOM05D004323 ORTHO05D005140 2.7e-29 133.7 289 35.6
SHI04771 Sapria himalayana HOM05D004323 ORTHO05D005140 3.5e-29 133.3 111 59.5
MD13G1027200 Malus domestica HOM05D004323 ORTHO05D005140 4.6e-29 132.9 280 37.5
DCAR_010732 Daucus carota HOM05D004323 ORTHO05D005140 6.0e-29 132.5 287 35.5
Potri.010G114900 Populus trichocarpa HOM05D004323 ORTHO05D005140 6.0e-29 132.5 290 35.5
FAN17G1549 Fragaria x ananassa HOM05D004323 ORTHO05D005140 7.8e-29 132.1 284 37.7
Sed0006370 Sechium edule HOM05D004323 ORTHO05D005140 7.8e-29 132.1 291 36.1
QL01p002128 Quercus lobata HOM05D004323 ORTHO05D005140 1.0e-28 131.7 298 36.6
COL.COLO4_27122 Corchorus olitorius HOM05D004323 ORTHO05D005140 1.3e-28 131.3 297 35.4
Lj5g0025367 Lotus japonicus HOM05D004323 ORTHO05D005140 1.3e-28 131.3 283 35.3
Lalb_Chr06g0165621 Lupinus albus HOM05D004323 ORTHO05D005140 1.7e-28 131.0 280 36.8
THA.LOC104810161 Tarenaya hassleriana HOM05D004323 ORTHO05D005140 1.7e-28 131.0 250 38.0
Cfa007861 Carpinus fangiana HOM05D004323 ORTHO05D007831 2.3e-28 130.6 296 36.5
Thhalv10027858m.g Eutrema salsugineum HOM05D004323 ORTHO05D005140 3.0e-28 130.2 116 56.0
CDE08G1420 Ceratophyllum demersum HOM05D004323 ORTHO05D005140 3.9e-28 129.8 276 36.6
PGR119G1370 Punica granatum HOM05D004323 ORTHO05D005140 3.9e-28 129.8 96 60.4
VMungo0720G0280 Vigna mungo HOM05D004323 ORTHO05D005140 3.9e-28 129.8 286 36.7
CARHR214700 Cardamine hirsuta HOM05D004323 ORTHO05D005140 5.1e-28 129.4 118 55.9
Potri.004G092200 Populus trichocarpa HOM05D004323 ORTHO05D005140 5.1e-28 129.4 276 37.0
Sp7g04050 Schrenkiella parvula HOM05D004323 ORTHO05D005140 5.1e-28 129.4 115 53.9
ClCG07G004410 Citrullus lanatus HOM05D004323 ORTHO05D005140 8.7e-28 128.6 96 61.5
MD16G1030300 Malus domestica HOM05D004323 ORTHO05D005140 1.9e-27 127.5 280 36.8
Atru.chr1.1769 Acer truncatum HOM05D004323 ORTHO05D005140 2.5e-27 127.1 296 34.1
Migut.L00479 Erythranthe guttata HOM05D004323 ORTHO05D005140 2.5e-27 127.1 303 35.3
SalBow7G2861 Salvia bowleyana HOM05D004323 ORTHO05D005140 5.6e-27 125.9 285 35.4
Cpa.g.sc116.11 Carica papaya HOM05D004323 ORTHO05D005140 9.6e-27 125.2 294 36.7
CiPaw.03G067400 Carya illinoinensis HOM05D004323 ORTHO05D005140 1.2e-26 124.8 297 35.0
Manes.02G073900 Manihot esculenta HOM05D004323 ORTHO05D005140 1.2e-26 124.8 289 37.0
MBI16_g32956_MAGBIO Magnolia biondii HOM05D004323 ORTHO05D005140 6.2e-26 122.5 271 37.3
AT5G38050 Arabidopsis thaliana HOM05D004323 ORTHO05D005140 1.4e-25 121.3 119 51.3
Haze_14209 Corylus avellana HOM05D004323 ORTHO05D007831 2.4e-25 120.6 302 36.4
Ciclev10012163m.g Citrus clementina HOM05D004323 ORTHO05D005140 3.1e-25 120.2 294 34.0
Lalb_Chr02g0145481 Lupinus albus HOM05D004323 ORTHO05D005140 4.0e-25 119.8 287 33.8
SGA_v2.0_scaffold174G39287 Striga asiatica HOM05D004323 ORTHO05D005140 4.0e-25 119.8 292 34.9
TWI53G1939 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 6.9e-25 119.0 290 35.9
CSS0030424 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 1.5e-24 117.9 146 45.9
Sabra04G0062000 Salix brachista HOM05D004323 ORTHO05D005140 1.5e-24 117.9 132 50.0
AUR62036351 Chenopodium quinoa HOM05D004323 ORTHO05D005140 3.4e-24 116.7 86 67.4
Aa31LG9G17280 Aethionema arabicum HOM05D004323 ORTHO05D004022 1.9e-22 110.9 111 50.5
Peaxi162Scf00803g00424 Petunia axillaris HOM05D004323 ORTHO05D005140 5.4e-22 109.4 272 38.2
Carub.0005s1233 Capsella rubella HOM05D004323 ORTHO05D005140 1.6e-21 107.8 131 45.8
CSS0049640 Camellia sinensis var. sinensis HOM05D004323 ORTHO05D005140 8.7e-20 102.1 105 51.4
Aqoxy3G03961 Aquilegia oxysepala HOM05D004323 ORTHO05D005140 4.3e-19 99.8 291 34.0
Actinidia17651 Actinidia chinensis HOM05D004323 ORTHO05D005140 2.1e-18 97.4 176 39.8
BcaB06g27162 Brassica carinata HOM05D004323 ORTHO05D005140 1.8e-17 94.4 115 45.2
TWI75G0714 Tripterygium wilfordii HOM05D004323 ORTHO05D005140 1.8e-17 94.4 267 33.3
unitig_32.g11885 Utricularia gibba HOM05D004323 ORTHO05D005140 3.5e-13 80.1 113 44.2
FvH4_7g01202 Fragaria vesca HOM05D004323 ORTHO05D005140 8.7e-12 75.5 65 49.2
BcaB05g24642 Brassica carinata HOM05D004323 ORTHO05D005140 4.3e-11 73.2 157 36.3


User provided reference genes

Program Settings