Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0164 Marchantia polymorpha HOM05D004716 ORTHO05D005646 0.0e+00 1271.9 644 100.0
AagrBONN_evm.TU.Sc2ySwM_344.4417 Anthoceros agrestis HOM05D004716 ORTHO05D005646 4.9e-229 798.1 672 64.9
Pp3c6_18530 Physcomitrium patens HOM05D004716 ORTHO05D005646 7.1e-228 794.3 651 65.7
Pp3c5_6660 Physcomitrium patens HOM05D004716 ORTHO05D005646 2.0e-222 776.2 649 63.6
SMO331G0079 Selaginella moellendorffii HOM05D004716 ORTHO05D005646 3.3e-193 679.1 648 57.9
TWI34G0952 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 4.7e-171 605.5 659 50.8
Actinidia17798 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.6e-169 599.7 652 51.1
MD05G1023700 Malus domestica HOM05D004716 ORTHO05D005646 8.3e-168 594.7 662 50.5
TAR381G1500 Trochodendron aralioides HOM05D004716 ORTHO05D005646 4.1e-167 592.4 660 49.4
MBI09_g32373_MAGBIO Magnolia biondii HOM05D004716 ORTHO05D005646 2.0e-166 590.1 648 50.6
GSVIVG01034512001 Vitis vinifera HOM05D004716 ORTHO05D005646 2.7e-166 589.7 657 50.4
Potri.002G069100 Populus trichocarpa HOM05D004716 ORTHO05D005646 7.7e-166 588.2 655 50.4
Hma1.2p1_0105F.1_g050810 Hydrangea macrophylla HOM05D004716 ORTHO05D005646 1.7e-165 587.0 663 49.5
RcHm_v2.0_Chr6g0275661 Rosa chinensis HOM05D004716 ORTHO05D005646 2.9e-165 586.3 646 50.9
CiPaw.16G013500 Carya illinoinensis HOM05D004716 ORTHO05D005646 3.8e-165 585.9 657 50.1
Potri.005G191300 Populus trichocarpa HOM05D004716 ORTHO05D005646 5.0e-165 585.5 653 49.6
PSO210G2251 Papaver somniferum HOM05D004716 ORTHO05D005646 1.1e-164 584.3 664 50.5
Prupe.8G028200 Prunus persica HOM05D004716 ORTHO05D005646 1.5e-164 583.9 657 49.0
AUR62013572 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.9e-164 583.6 655 49.9
FAN27G2333 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.5e-164 583.2 652 50.8
FAN15G2444 Fragaria x ananassa HOM05D004716 ORTHO05D005646 3.3e-164 582.8 651 50.2
Aqoxy5G02106 Aquilegia oxysepala HOM05D004716 ORTHO05D005646 4.2e-164 582.4 656 50.0
CANSAT25G0539 Cannabis sativa HOM05D004716 ORTHO05D005646 7.2e-164 581.6 660 50.2
Cc10_g14730 Coffea canephora HOM05D004716 ORTHO05D005646 7.2e-164 581.6 659 50.2
TAR625G0458 Trochodendron aralioides HOM05D004716 ORTHO05D005646 9.5e-164 581.3 666 49.1
arahy.Tifrunner.gnm1.ann1.LT68UB Arachis hypogaea HOM05D004716 ORTHO05D005646 1.2e-163 580.9 658 49.7
arahy.Tifrunner.gnm1.ann1.RZZD7S Arachis hypogaea HOM05D004716 ORTHO05D005646 1.2e-163 580.9 658 49.7
Rhsim06G0090400 Rhododendron simsii HOM05D004716 ORTHO05D005646 1.2e-163 580.9 652 50.2
Dinv41092 Davidia involucrata HOM05D004716 ORTHO05D005646 2.1e-163 580.1 662 50.5
FvH4_2g13910 Fragaria vesca HOM05D004716 ORTHO05D005646 2.1e-163 580.1 651 50.5
FAN20G2258 Fragaria x ananassa HOM05D004716 ORTHO05D005646 2.1e-163 580.1 652 51.1
Nn5g28715 Nelumbo nucifera HOM05D004716 ORTHO05D005646 2.1e-163 580.1 657 50.2
TWI60G0041 Tripterygium wilfordii HOM05D004716 ORTHO05D005646 2.1e-163 580.1 656 49.4
Manes.18G091200 Manihot esculenta HOM05D004716 ORTHO05D005646 3.6e-163 579.3 653 48.9
CsaV3_7G025180 Cucumis sativus L. HOM05D004716 ORTHO05D005646 4.7e-163 578.9 659 48.6
CiPaw.15G016900 Carya illinoinensis HOM05D004716 ORTHO05D005646 6.1e-163 578.6 657 49.2
Ah.05g167860 Amaranthus hybridus HOM05D004716 ORTHO05D005646 8.0e-163 578.2 654 49.4
Sabra02G0054300 Salix brachista HOM05D004716 ORTHO05D005646 8.0e-163 578.2 665 48.6
MELO3C023718.2 Cucumis melo HOM05D004716 ORTHO05D005646 3.0e-162 576.2 659 48.4
EL10Ac1g01533 Beta vulgaris HOM05D004716 ORTHO05D005646 4.0e-162 575.9 666 49.4
ClCG09G009620 Citrullus lanatus HOM05D004716 ORTHO05D005646 5.2e-162 575.5 659 49.0
Duzib116G0661 Durio zibethinus HOM05D004716 ORTHO05D005646 5.2e-162 575.5 653 49.2
FAN24G2048 Fragaria x ananassa HOM05D004716 ORTHO05D005646 5.2e-162 575.5 655 50.7
HanXRQChr10g0279061 Helianthus annuus HOM05D004716 ORTHO05D005646 6.8e-162 575.1 655 49.5
Nitab4.5_0008759g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 8.9e-162 574.7 651 49.0
DCAR_001131 Daucus carota HOM05D004716 ORTHO05D005646 2.6e-161 573.2 656 48.5
Sabra05G0146100 Salix brachista HOM05D004716 ORTHO05D005646 9.8e-161 571.2 655 49.8
Oeu046025.1 Olea europaea HOM05D004716 ORTHO05D005646 2.2e-160 570.1 653 49.8
Sed0005850 Sechium edule HOM05D004716 ORTHO05D005646 3.7e-160 569.3 656 48.8
Migut.N03224 Erythranthe guttata HOM05D004716 ORTHO05D005646 4.9e-160 568.9 662 49.1
Haze_17746 Corylus avellana HOM05D004716 ORTHO05D005646 8.3e-160 568.2 657 48.9
Dinv25852 Davidia involucrata HOM05D004716 ORTHO05D005646 1.4e-159 567.4 662 48.8
Duzib041G0148 Durio zibethinus HOM05D004716 ORTHO05D005646 2.4e-159 566.6 651 48.7
SalBow7G0781 Salvia bowleyana HOM05D004716 ORTHO05D005646 5.4e-159 565.5 652 48.6
THA.LOC104809692 Tarenaya hassleriana HOM05D004716 ORTHO05D005646 5.4e-159 565.5 613 51.5
Gorai.009G253500 Gossypium raimondii HOM05D004716 ORTHO05D005646 9.2e-159 564.7 652 48.5
Nitab4.5_0000032g0020 Nicotiana tabacum HOM05D004716 ORTHO05D005646 1.2e-158 564.3 652 48.6
Sed0016522 Sechium edule HOM05D004716 ORTHO05D005646 2.0e-158 563.5 657 48.7
Cfa018329 Carpinus fangiana HOM05D004716 ORTHO05D005646 2.7e-158 563.1 652 48.2
MD10G1024300 Malus domestica HOM05D004716 ORTHO05D005646 3.5e-158 562.8 657 48.2
Lalb_Chr01g0009631 Lupinus albus HOM05D004716 ORTHO05D005646 7.8e-158 561.6 658 48.0
Phvul.007G079400 Phaseolus vulgaris HOM05D004716 ORTHO05D005646 7.8e-158 561.6 658 49.8
Thecc.08G149900 Theobroma cacao HOM05D004716 ORTHO05D005646 1.0e-157 561.2 536 54.5
Atru.chr13.2155 Acer truncatum HOM05D004716 ORTHO05D005646 1.3e-157 560.8 653 47.8
AUR62026717 Chenopodium quinoa HOM05D004716 ORTHO05D005646 1.3e-157 560.8 652 48.0
Ca_19935_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.7e-157 560.5 651 48.7
MSTRG.22371 Avicennia marina HOM05D004716 ORTHO05D005646 2.9e-157 559.7 668 48.1
PSO238G0051 Papaver somniferum HOM05D004716 ORTHO05D005646 3.8e-157 559.3 665 48.7
Gohir.A05G242900 Gossypium hirsutum HOM05D004716 ORTHO05D005646 5.0e-157 558.9 652 48.3
A10p07790 Brassica napus HOM05D004716 ORTHO05D005646 1.2e-155 554.3 664 47.6
Eucgr.F04241 Eucalyptus grandis HOM05D004716 ORTHO05D005646 2.1e-155 553.5 660 48.0
Glyma.20G166300 Glycine max HOM05D004716 ORTHO05D005646 3.6e-155 552.7 658 48.8
BraSC36t46025Z Brassica rapa HOM05D004716 ORTHO05D005646 4.7e-155 552.4 664 47.4
Gohir.A05G270100 Gossypium hirsutum HOM05D004716 ORTHO05D005646 1.0e-154 551.2 655 47.8
Gorai.009G285100 Gossypium raimondii HOM05D004716 ORTHO05D005646 1.4e-154 550.8 655 47.9
COL.COLO4_37837 Corchorus olitorius HOM05D004716 ORTHO05D005646 1.8e-154 550.4 537 52.9
Thhalv10011324m.g Eutrema salsugineum HOM05D004716 ORTHO05D005646 2.3e-154 550.1 658 48.3
Glyma.10G225500 Glycine max HOM05D004716 ORTHO05D005646 4.0e-154 549.3 656 48.5
Sp1g32700 Schrenkiella parvula HOM05D004716 ORTHO05D005646 5.2e-154 548.9 656 48.5
ECA246G4589 Erigeron canadensis HOM05D004716 ORTHO05D005646 6.8e-154 548.5 644 48.9
CDE08G0143 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 8.9e-154 548.1 665 47.2
Duzib093G0980 Durio zibethinus HOM05D004716 ORTHO05D005646 8.9e-154 548.1 652 47.7
BcaB07g33979 Brassica carinata HOM05D004716 ORTHO05D005646 1.2e-153 547.7 656 47.4
BcaC08g42816 Brassica carinata HOM05D004716 ORTHO05D005646 1.5e-153 547.4 656 47.3
C06p00280 Brassica napus HOM05D004716 ORTHO05D005646 1.5e-153 547.4 656 47.3
Carub.0001s3471 Capsella rubella HOM05D004716 ORTHO05D005646 2.0e-153 547.0 656 48.2
Lsat_1_v5_gn_6_99641 Lactuca sativa HOM05D004716 ORTHO05D005646 2.0e-153 547.0 647 49.0
AL1G51810 Arabidopsis lyrata HOM05D004716 ORTHO05D005646 2.6e-153 546.6 655 47.0
Aa31LG6G9740 Aethionema arabicum HOM05D004716 ORTHO05D005646 3.4e-153 546.2 652 47.9
Peaxi162Scf00765g00315 Petunia axillaris HOM05D004716 ORTHO05D005646 5.8e-153 545.4 656 47.4
Lj7A371T50 Lonicera japonica HOM05D004716 ORTHO05D005646 4.9e-152 542.3 521 53.6
Ciclev10000573m.g Citrus clementina HOM05D004716 ORTHO05D005646 1.1e-151 541.2 659 48.4
Lalb_Chr06g0161551 Lupinus albus HOM05D004716 ORTHO05D005646 2.4e-151 540.0 525 53.3
Sopen04g027280 Solanum pennellii HOM05D004716 ORTHO05D005646 5.4e-151 538.9 658 47.4
Lj5g0004042 Lotus japonicus HOM05D004716 ORTHO05D005646 1.6e-150 537.3 657 48.9
Sed0004003 Sechium edule HOM05D004716 ORTHO05D005646 2.0e-150 537.0 513 54.6
SGA_v2.0_scaffold25G11175 Striga asiatica HOM05D004716 ORTHO05D005646 2.0e-150 537.0 663 46.3
PGR044G2101 Punica granatum HOM05D004716 ORTHO05D005646 2.7e-150 536.6 662 47.4
AT1G43690 Arabidopsis thaliana HOM05D004716 ORTHO05D005646 6.0e-150 535.4 656 46.6
unitig_62.g23528 Utricularia gibba HOM05D004716 ORTHO05D005646 7.8e-150 535.0 657 47.3
Nn1g06102 Nelumbo nucifera HOM05D004716 ORTHO05D005646 3.9e-149 532.7 486 55.8
Solyc04g071320.4 Solanum lycopersicum HOM05D004716 ORTHO05D005646 1.1e-148 531.2 522 53.8
CARHR035580 Cardamine hirsuta HOM05D004716 ORTHO05D005646 4.3e-148 529.3 658 46.7
TPR.G30003 Trifolium pratense HOM05D004716 ORTHO05D005646 8.0e-147 525.0 652 47.7
CAN.G268.7 Capsicum annuum HOM05D004716 ORTHO05D005646 4.0e-146 522.7 658 46.5
Gohir.D05G244400 Gossypium hirsutum HOM05D004716 ORTHO05D005646 6.8e-146 521.9 643 47.0
Zm00001eb422340 Zea mays HOM05D004716 ORTHO05D005646 1.5e-145 520.8 658 47.6
Medtr1g098940 Medicago truncatula HOM05D004716 ORTHO05D005646 2.0e-145 520.4 650 47.1
TPR.G36694 Trifolium pratense HOM05D004716 ORTHO05D005646 4.4e-145 519.2 530 52.1
QL02p024060 Quercus lobata HOM05D004716 ORTHO05D005646 2.9e-144 516.5 783 41.3
CBR_g11170 Chara braunii HOM05D004716 ORTHO05D005646 5.4e-143 512.3 728 43.3
Gohir.D05G272200 Gossypium hirsutum HOM05D004716 ORTHO05D005646 9.2e-143 511.5 655 45.3
Migut.C01013 Erythranthe guttata HOM05D004716 ORTHO05D005646 1.0e-141 508.1 521 51.6
HPP92_019355 Vanilla planifolia HOM05D004716 ORTHO05D005646 8.6e-141 505.0 563 49.9
Lj4C695G10 Lonicera japonica HOM05D004716 ORTHO05D005646 9.9e-137 491.5 655 44.1
CSS0049856 Camellia sinensis var. sinensis HOM05D004716 ORTHO05D005646 4.6e-134 482.6 457 54.5
SHI09390 Sapria himalayana HOM05D004716 ORTHO05D005646 4.6e-134 482.6 506 50.2
SGA_v2.0_scaffold24G10374 Striga asiatica HOM05D004716 ORTHO05D005646 1.9e-132 477.2 659 44.6
ATR0772G093 Amborella trichopoda HOM05D004716 ORTHO05D005646 2.0e-129 467.2 465 52.0
CDE06G2375 Ceratophyllum demersum HOM05D004716 ORTHO05D005646 7.6e-129 465.3 655 43.8
Sc02g0004170 Simmondsia chinensis HOM05D004716 ORTHO05D005646 7.6e-129 465.3 457 52.5
SalBow6G6163 Salvia bowleyana HOM05D004716 ORTHO05D005646 3.8e-128 463.0 693 42.4
Oeu011938.1 Olea europaea HOM05D004716 ORTHO05D005646 2.7e-126 456.8 652 43.1
Ca_25988_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 1.9e-124 450.7 400 55.8
Cpa.g.sc21.190 Carica papaya HOM05D004716 ORTHO05D005646 1.6e-123 447.6 434 54.6
Oeu014493.1 Olea europaea HOM05D004716 ORTHO05D005646 3.0e-117 426.8 364 58.8
Psat6g193200 Pisum sativum HOM05D004716 ORTHO05D005646 8.4e-112 408.7 315 63.2
Zm00001eb422260 Zea mays HOM05D004716 ORTHO05D005646 4.6e-110 402.9 309 62.8
Psat6g193040 Pisum sativum HOM05D004716 ORTHO05D005646 1.2e-105 388.3 300 62.0
vmacro21155 Vaccinium macrocarpon HOM05D004716 ORTHO05D005646 5.8e-105 386.0 346 56.1
Os04g0421800 Oryza sativa ssp. japonica HOM05D004716 ORTHO05D005646 3.2e-103 380.2 298 60.7
HanXRQChr10g0277841 Helianthus annuus HOM05D004716 ORTHO05D005646 2.5e-84 317.4 309 55.7
Zm00001eb422280 Zea mays HOM05D004716 ORTHO05D005646 4.8e-83 313.2 256 59.4
Zm00001eb422320 Zea mays HOM05D004716 ORTHO05D005646 4.8e-83 313.2 256 59.4
PRCOL_00002924 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 6.8e-61 239.6 429 38.5
Actinidia10653 Actinidia chinensis HOM05D004716 ORTHO05D005646 2.1e-54 218.0 237 51.9
Cre06.g286600 Chlamydomonas reinhardtii HOM05D004716 ORTHO05D005646 1.2e-28 132.5 312 34.6
CAN.G309.90 Capsicum annuum HOM05D004716 ORTHO05D005646 3.5e-25 120.9 156 44.9
PRCOL_00004133 Prasinoderma coloniale HOM05D004716 ORTHO05D005646 7.8e-25 119.8 296 34.8
Cpa.g.sc21.191 Carica papaya HOM05D004716 ORTHO05D005646 3.0e-24 117.9 195 42.6
ATR0772G018 Amborella trichopoda HOM05D004716 ORTHO05D005646 4.3e-23 114.0 226 38.5
VMungo0464G1352 Vigna mungo HOM05D004716 ORTHO05D005646 6.2e-22 110.2 279 34.4
SEGI_31186 Sequoiadendron giganteum HOM05D004716 ORTHO05D005646 1.8e-21 108.6 170 42.9
Actinidia13988 Actinidia chinensis HOM05D004716 ORTHO05D005646 1.9e-18 98.6 87 52.9
Actinidia10651 Actinidia chinensis HOM05D004716 ORTHO05D005646 4.9e-11 73.9 193 33.2
TAR636G3535 Trochodendron aralioides HOM05D004716 ORTHO05D005646 2.3e-08 65.1 123 32.5
Ca_25987_v3 Cicer arietinum L. HOM05D004716 ORTHO05D005646 3.3e-07 61.2 168 32.1


User provided reference genes

Program Settings