Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0147 Marchantia polymorpha HOM05D004140 ORTHO05D006116 0.0e+00 1080.9 550 100.0
Pp3c24_800 Physcomitrium patens HOM05D004140 ORTHO05D006116 2.3e-179 632.9 450 70.9
AagrBONN_evm.TU.Sc2ySwM_117.4009 Anthoceros agrestis HOM05D004140 ORTHO05D006116 1.3e-166 590.5 459 64.3
ATR0776G070 Amborella trichopoda HOM05D004140 ORTHO05D006116 2.0e-146 523.5 457 58.4
Eucgr.K02037 Eucalyptus grandis HOM05D004140 ORTHO05D006116 2.6e-146 523.1 458 59.4
Manes.08G025400 Manihot esculenta HOM05D004140 ORTHO05D006116 1.4e-144 517.3 510 54.9
Sopen04g018570 Solanum pennellii HOM05D004140 ORTHO05D006116 2.7e-143 513.1 516 53.7
TWI77G1027 Tripterygium wilfordii HOM05D004140 ORTHO05D006116 2.7e-143 513.1 482 57.3
CDE06G1324 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 4.6e-143 512.3 492 54.7
Nn6g34895 Nelumbo nucifera HOM05D004140 ORTHO05D006116 7.9e-143 511.5 527 52.8
Nitab4.5_0000071g0150 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.3e-142 510.8 479 55.7
Glyma.01G077300 Glycine max HOM05D004140 ORTHO05D006116 1.8e-142 510.4 455 57.8
QL07p038993 Quercus lobata HOM05D004140 ORTHO05D006116 1.8e-142 510.4 487 55.6
QL07p038742 Quercus lobata HOM05D004140 ORTHO05D006116 2.3e-142 510.0 481 55.7
CiPaw.09G014200 Carya illinoinensis HOM05D004140 ORTHO05D006116 3.9e-142 509.2 467 56.1
Nitab4.5_0008893g0010 Nicotiana tabacum HOM05D004140 ORTHO05D006116 3.9e-142 509.2 467 56.5
Aqoxy2G01189 Aquilegia oxysepala HOM05D004140 ORTHO05D006116 8.7e-142 508.1 451 58.8
PGR142G4281 Punica granatum HOM05D004140 ORTHO05D006116 5.6e-141 505.4 450 56.9
Glyma.11G176309 Glycine max HOM05D004140 ORTHO05D006116 1.6e-140 503.8 455 56.9
Hma1.2p1_0084F.1_g043830 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 2.1e-140 503.4 457 56.2
Rhsim07G0139000 Rhododendron simsii HOM05D004140 ORTHO05D006116 2.1e-140 503.4 523 52.2
CAN.G1407.2 Capsicum annuum HOM05D004140 ORTHO05D006116 3.7e-140 502.7 457 57.5
CsaV3_3G037290 Cucumis sativus L. HOM05D004140 ORTHO05D006116 1.1e-139 501.1 484 55.0
MELO3C009474.2 Cucumis melo HOM05D004140 ORTHO05D006116 4.0e-139 499.2 488 53.9
Gorai.009G402800 Gossypium raimondii HOM05D004140 ORTHO05D006116 5.3e-139 498.8 532 50.4
Gohir.D04G099900 Gossypium hirsutum HOM05D004140 ORTHO05D006116 9.0e-139 498.0 532 50.4
Potri.004G090400 Populus trichocarpa HOM05D004140 ORTHO05D006116 9.0e-139 498.0 497 54.1
SGA_v2.0_scaffold13G06716 Striga asiatica HOM05D004140 ORTHO05D006116 9.0e-139 498.0 457 56.2
THA.LOC104823220 Tarenaya hassleriana HOM05D004140 ORTHO05D006116 9.0e-139 498.0 457 56.0
Actinidia18162 Actinidia chinensis HOM05D004140 ORTHO05D006116 1.5e-138 497.3 458 56.3
CBR_g12587 Chara braunii HOM05D004140 ORTHO05D006116 1.5e-138 497.3 479 55.5
Actinidia14741 Actinidia chinensis HOM05D004140 ORTHO05D006116 2.0e-138 496.9 460 55.9
Medtr7g030010 Medicago truncatula HOM05D004140 ORTHO05D006116 2.0e-138 496.9 455 55.6
Medtr7g038740 Medicago truncatula HOM05D004140 ORTHO05D006116 2.0e-138 496.9 455 55.6
Gohir.A04G062800 Gossypium hirsutum HOM05D004140 ORTHO05D006116 1.3e-137 494.2 532 50.0
Sed0020948 Sechium edule HOM05D004140 ORTHO05D006116 1.3e-137 494.2 472 54.0
Lalb_Chr07g0194001 Lupinus albus HOM05D004140 ORTHO05D006116 2.2e-137 493.4 522 51.5
VMungo1383G3240 Vigna mungo HOM05D004140 ORTHO05D006116 2.2e-137 493.4 455 56.3
MD12G1036400 Malus domestica HOM05D004140 ORTHO05D006116 2.9e-137 493.0 464 55.2
arahy.Tifrunner.gnm1.ann1.0JB8QE Arachis hypogaea HOM05D004140 ORTHO05D006116 3.8e-137 492.7 482 53.9
arahy.Tifrunner.gnm1.ann1.IX7NGG Arachis hypogaea HOM05D004140 ORTHO05D006116 3.8e-137 492.7 482 53.9
Lj2A137T30 Lonicera japonica HOM05D004140 ORTHO05D006116 8.4e-137 491.5 519 51.4
Migut.J01039 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.4e-136 490.7 478 54.2
SalBow3G3032 Salvia bowleyana HOM05D004140 ORTHO05D006116 1.4e-136 490.7 456 55.7
AT5G03900 Arabidopsis thaliana HOM05D004140 ORTHO05D006116 1.9e-136 490.3 537 49.7
CANSAT80G0330 Cannabis sativa HOM05D004140 ORTHO05D006116 1.9e-136 490.3 485 53.8
COL.COLO4_29732 Corchorus olitorius HOM05D004140 ORTHO05D006116 4.2e-136 489.2 530 50.4
Lj1g0011596 Lotus japonicus HOM05D004140 ORTHO05D006116 5.5e-136 488.8 452 55.5
MD14G1023200 Malus domestica HOM05D004140 ORTHO05D006116 5.5e-136 488.8 466 54.9
Haze_19613 Corylus avellana HOM05D004140 ORTHO05D006116 7.1e-136 488.4 532 50.6
PSO339G4989 Papaver somniferum HOM05D004140 ORTHO05D006116 7.1e-136 488.4 447 56.6
Thecc.05G089300 Theobroma cacao HOM05D004140 ORTHO05D006116 9.3e-136 488.0 457 54.9
PSO384G3764 Papaver somniferum HOM05D004140 ORTHO05D006116 2.7e-135 486.5 447 56.4
Sc02g0000260 Simmondsia chinensis HOM05D004140 ORTHO05D006116 2.7e-135 486.5 442 57.0
TAR633G1381 Trochodendron aralioides HOM05D004140 ORTHO05D006116 3.5e-135 486.1 450 57.1
Carub.0006s0285 Capsella rubella HOM05D004140 ORTHO05D006116 4.6e-135 485.7 543 50.8
Sabra04G0060700 Salix brachista HOM05D004140 ORTHO05D006116 1.0e-134 484.6 464 55.8
GSVIVG01033846001 Vitis vinifera HOM05D004140 ORTHO05D006116 3.9e-134 482.6 436 57.1
FAN14G5862 Fragaria x ananassa HOM05D004140 ORTHO05D006116 6.7e-134 481.9 451 55.2
RcHm_v2.0_Chr3g0473691 Rosa chinensis HOM05D004140 ORTHO05D006116 6.7e-134 481.9 450 54.4
AL6G13480 Arabidopsis lyrata HOM05D004140 ORTHO05D006116 8.7e-134 481.5 537 50.8
ECA248G2777 Erigeron canadensis HOM05D004140 ORTHO05D000452 1.5e-133 480.7 528 50.8
FAN05G3313 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.9e-133 480.3 451 55.0
FAN02G3405 Fragaria x ananassa HOM05D004140 ORTHO05D006116 2.5e-133 479.9 451 54.5
HanXRQChr05g0163581 Helianthus annuus HOM05D004140 ORTHO05D006116 3.7e-132 476.1 452 55.1
Cc06_g05780 Coffea canephora HOM05D004140 ORTHO05D006116 5.3e-131 472.2 442 54.3
FAN05G2644 Fragaria x ananassa HOM05D004140 ORTHO05D006116 5.3e-131 472.2 462 53.7
Zm00001eb242770 Zea mays HOM05D004140 ORTHO05D006116 5.3e-131 472.2 452 54.6
ClCG10G018960 Citrullus lanatus HOM05D004140 ORTHO05D006116 1.2e-130 471.1 464 53.0
BraA02t04791Z Brassica rapa HOM05D004140 ORTHO05D006116 2.6e-130 469.9 468 52.4
Os02g0533000 Oryza sativa ssp. japonica HOM05D004140 ORTHO05D006116 2.6e-130 469.9 453 54.5
Ah.15g090870 Amaranthus hybridus HOM05D004140 ORTHO05D006116 3.4e-130 469.5 460 53.5
Peaxi162Scf01227g00030 Petunia axillaris HOM05D004140 ORTHO05D006116 1.0e-129 468.0 456 54.4
A10p32220 Brassica napus HOM05D004140 ORTHO05D006116 2.2e-129 466.8 530 48.9
BraA10t45265Z Brassica rapa HOM05D004140 ORTHO05D006116 2.2e-129 466.8 530 48.9
Thhalv10013253m.g Eutrema salsugineum HOM05D004140 ORTHO05D006116 2.2e-129 466.8 538 48.0
Phvul.008G154100 Phaseolus vulgaris HOM05D004140 ORTHO05D006116 6.5e-129 465.3 456 53.5
Atru.chr8.1534 Acer truncatum HOM05D004140 ORTHO05D006116 8.4e-129 464.9 467 52.9
C02p01600 Brassica napus HOM05D004140 ORTHO05D006116 8.4e-129 464.9 450 53.3
Lsat_1_v5_gn_5_164821 Lactuca sativa HOM05D004140 ORTHO05D006116 8.4e-129 464.9 448 54.2
CARHR209360 Cardamine hirsuta HOM05D004140 ORTHO05D006116 1.9e-128 463.8 535 48.8
TPR.G39122 Trifolium pratense HOM05D004140 ORTHO05D006116 1.9e-128 463.8 485 50.5
BolC9t60037H Brassica oleracea HOM05D004140 ORTHO05D006116 5.5e-128 462.2 535 48.4
BcaC06g32093 Brassica carinata HOM05D004140 ORTHO05D006116 7.1e-128 461.8 532 48.5
BolC2t06125H Brassica oleracea HOM05D004140 ORTHO05D006116 7.1e-128 461.8 450 53.3
CDE08G0731 Ceratophyllum demersum HOM05D004140 ORTHO05D006116 2.1e-127 460.3 413 57.4
Sp6g38830 Schrenkiella parvula HOM05D004140 ORTHO05D006116 2.1e-127 460.3 536 47.9
Aa31LG1G21380 Aethionema arabicum HOM05D004140 ORTHO05D006116 4.6e-127 459.1 455 52.7
unitig_578.g16025 Utricularia gibba HOM05D004140 ORTHO05D006116 2.3e-126 456.8 505 48.9
Duzib093G1424 Durio zibethinus HOM05D004140 ORTHO05D006116 9.7e-125 451.4 527 47.8
C09p73020 Brassica napus HOM05D004140 ORTHO05D006116 1.3e-124 451.1 550 47.1
Dinv31688 Davidia involucrata HOM05D004140 ORTHO05D006116 3.1e-123 446.4 414 56.5
Ciclev10013333m.g Citrus clementina HOM05D004140 ORTHO05D006116 5.3e-123 445.7 456 51.5
SMO137G0276 Selaginella moellendorffii HOM05D004140 ORTHO05D006116 9.0e-123 444.9 464 53.4
HPP92_005468 Vanilla planifolia HOM05D004140 ORTHO05D006116 7.7e-122 441.8 516 49.0
AUR62028518 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.7e-121 440.7 547 47.5
Ca_19610_v3 Cicer arietinum L. HOM05D004140 ORTHO05D006116 6.7e-118 428.7 410 54.9
Prupe.7G109900 Prunus persica HOM05D004140 ORTHO05D006116 4.1e-115 419.5 395 54.9
Cfa016609 Carpinus fangiana HOM05D004140 ORTHO05D006116 5.3e-115 419.1 378 57.4
AUR62006183 Chenopodium quinoa HOM05D004140 ORTHO05D006116 1.5e-114 417.5 617 42.9
BcaB05g21796 Brassica carinata HOM05D004140 ORTHO05D006116 1.0e-113 414.8 460 48.5
FvH4_6g18720 Fragaria vesca HOM05D004140 ORTHO05D006116 3.8e-113 412.9 395 53.7
DCAR_013387 Daucus carota HOM05D004140 ORTHO05D006116 5.0e-113 412.5 414 54.8
HanXRQChr01g0001941 Helianthus annuus HOM05D004140 ORTHO05D006116 5.0e-113 412.5 481 47.6
EL10Ac7g16915 Beta vulgaris HOM05D004140 ORTHO05D006116 1.1e-112 411.4 458 49.3
Hund19931 Selenicereus undatus HOM05D004140 ORTHO05D006116 1.4e-112 411.0 571 44.1
vmacro14235 Vaccinium macrocarpon HOM05D004140 ORTHO05D006116 2.5e-112 410.2 391 55.2
Solyc04g049130.4 Solanum lycopersicum HOM05D004140 ORTHO05D006116 4.7e-111 406.0 401 55.6
Hma1.2p1_0820F.1_g223840 Hydrangea macrophylla HOM05D004140 ORTHO05D006116 3.5e-106 389.8 406 51.7
CSS0000051 Camellia sinensis var. sinensis HOM05D004140 ORTHO05D006116 6.5e-105 385.6 357 55.2
Migut.J01040 Erythranthe guttata HOM05D004140 ORTHO05D006116 1.9e-104 384.0 452 47.8
RcHm_v2.0_Chr3g0473761 Rosa chinensis HOM05D004140 ORTHO05D006116 5.7e-93 345.9 487 43.5
Nitab4.5_0004212g0030 Nicotiana tabacum HOM05D004140 ORTHO05D006116 1.4e-91 341.3 465 45.6
PRCOL_00000272 Prasinoderma coloniale HOM05D004140 ORTHO05D006116 7.0e-91 339.0 441 42.2
DCAR_020746 Daucus carota HOM05D004140 ORTHO05D006116 2.5e-88 330.5 556 38.3
MCO08G276 Micromonas commoda HOM05D004140 ORTHO05D006116 1.8e-86 324.3 443 44.7
DCAR_007754 Daucus carota HOM05D004140 ORTHO05D006116 5.4e-83 312.8 340 50.6
Cre07.g338350 Chlamydomonas reinhardtii HOM05D004140 ORTHO05D006116 4.5e-82 309.7 571 38.2
Psat3g173320 Pisum sativum HOM05D004140 ORTHO05D006116 4.0e-70 270.0 249 56.2
HanXRQChr01g0001931 Helianthus annuus HOM05D004140 ORTHO05D006116 8.0e-63 245.7 304 46.7
FvH4_6g18750 Fragaria vesca HOM05D004140 ORTHO05D006116 7.8e-58 229.2 365 38.6
SEGI_29241 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 6.6e-49 199.5 206 52.4
Cpa.g.sc5.17 Carica papaya HOM05D004140 ORTHO05D006116 1.5e-48 198.4 337 38.0
Psat3g173280 Pisum sativum HOM05D004140 ORTHO05D006116 4.3e-48 196.8 213 47.9
Cc00_g34730 Coffea canephora HOM05D004140 ORTHO05D006116 7.6e-45 186.0 230 45.7
RcHm_v2.0_Chr2g0168601 Rosa chinensis HOM05D004140 ORTHO05D006116 1.9e-40 171.4 254 40.9
FAN02G1609 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.4e-35 155.2 257 38.5
FvH4_6g48690 Fragaria vesca HOM05D004140 ORTHO05D006116 3.2e-35 154.1 256 37.9
BcaC03g12977 Brassica carinata HOM05D004140 ORTHO05D006116 3.0e-33 147.5 154 46.1
FvH4_6g48680 Fragaria vesca HOM05D004140 ORTHO05D045602 1.8e-30 138.3 249 40.2
Peaxi162Scf00858g00312 Petunia axillaris HOM05D004140 ORTHO05D006116 1.3e-28 132.1 125 56.8
FAN14G1397 Fragaria x ananassa HOM05D004140 ORTHO05D045602 4.9e-28 130.2 240 37.5
FAN14G0184 Fragaria x ananassa HOM05D004140 ORTHO05D006116 1.2e-26 125.6 255 33.7
Lj2A1003T9 Lonicera japonica HOM05D004140 ORTHO05D006116 4.6e-26 123.6 196 38.8
FAN09G1572 Fragaria x ananassa HOM05D004140 ORTHO05D006116 7.9e-26 122.9 232 37.1
RcHm_v2.0_Chr3g0473721 Rosa chinensis HOM05D004140 ORTHO05D006116 3.9e-25 120.6 99 57.6
PGSC0003DMG400019058 Solanum tuberosum HOM05D004140 ORTHO05D006116 1.5e-24 118.6 105 54.3
FvH4_6g18760 Fragaria vesca HOM05D004140 ORTHO05D006116 3.7e-23 114.0 149 43.6
FAN05G3929 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.4e-22 112.1 142 45.1
FAN05G4146 Fragaria x ananassa HOM05D004140 ORTHO05D006116 3.1e-22 110.9 142 45.1
RcHm_v2.0_Chr3g0473731 Rosa chinensis HOM05D004140 ORTHO05D006116 3.1e-22 110.9 91 59.3
FAN14G0820 Fragaria x ananassa HOM05D004140 ORTHO05D006116 9.0e-22 109.4 139 44.6
RcHm_v2.0_Chr3g0473711 Rosa chinensis HOM05D004140 ORTHO05D006116 1.5e-21 108.6 135 45.2
RcHm_v2.0_Chr6g0257921 Rosa chinensis HOM05D004140 ORTHO05D006116 1.7e-20 105.1 77 64.9
Cpa.g.sc5.18 Carica papaya HOM05D004140 ORTHO05D006116 2.9e-20 104.4 128 46.1
SEGI_36218 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 5.5e-19 100.1 89 50.6
FvH4_6g48650 Fragaria vesca HOM05D004140 ORTHO05D197702 1.0e-17 95.9 247 30.4
DCAR_013386 Daucus carota HOM05D004140 ORTHO05D006116 1.9e-16 91.7 104 44.2
SEGI_03177 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.8e-14 85.1 107 45.8
FAN09G0971 Fragaria x ananassa HOM05D004140 ORTHO05D045442 9.0e-14 82.8 215 31.2
FvH4_6g48651 Fragaria vesca HOM05D004140 ORTHO05D045442 1.5e-13 82.0 215 31.2
MCO05G565 Micromonas commoda HOM05D004140 ORTHO05D269347 2.6e-13 81.3 123 36.6
SEGI_11477 Sequoiadendron giganteum HOM05D004140 ORTHO05D006116 1.0e-12 79.3 85 51.8
SHI23815 Sapria himalayana HOM05D004140 ORTHO05D006116 1.1e-11 75.9 99 37.4
Ca_23048_v3 Cicer arietinum L. HOM05D004140 ORTHO05D018624 3.2e-11 74.3 128 39.1
CAN.G2500.2 Capsicum annuum HOM05D004140 ORTHO05D018624 3.9e-09 67.4 57 57.9
FAN02G1460 Fragaria x ananassa HOM05D004140 ORTHO05D018624 1.5e-08 65.5 108 38.9


User provided reference genes

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