Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0108 Marchantia polymorpha HOM05D003446 ORTHO05D003915 1.6e-91 339.3 169 100.0
Os03g0265900 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 3.5e-25 119.0 165 47.3
arahy.Tifrunner.gnm1.ann1.TI8HRK Arachis hypogaea HOM05D003446 ORTHO05D003915 1.1e-21 107.5 170 43.5
Glyma.18G067500 Glycine max HOM05D003446 ORTHO05D003915 1.4e-21 107.1 172 41.3
arahy.Tifrunner.gnm1.ann1.6X3X3D Arachis hypogaea HOM05D003446 ORTHO05D003915 3.1e-21 105.9 171 43.3
CDE04G1890 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 3.1e-21 105.9 165 43.6
HPP92_015338 Vanilla planifolia HOM05D003446 ORTHO05D003915 3.1e-21 105.9 166 45.2
Os05g0451300 Oryza sativa ssp. japonica HOM05D003446 ORTHO05D003915 6.8e-21 104.8 168 39.9
AagrBONN_evm.TU.Sc2ySwM_228.1259 Anthoceros agrestis HOM05D001230 ORTHO05D001067 2.0e-20 103.2 153 42.5
Phvul.006G063800 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 2.0e-20 103.2 170 40.6
Thecc.09G307400 Theobroma cacao HOM05D003446 ORTHO05D003915 2.6e-20 102.8 171 43.3
FAN21G1385 Fragaria x ananassa HOM05D003446 ORTHO05D003915 1.7e-19 100.1 151 41.7
TWI79G0878 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 1.7e-19 100.1 154 44.2
Cfa011633 Carpinus fangiana HOM05D003446 ORTHO05D003915 2.9e-19 99.4 178 41.0
ECA236G4759 Erigeron canadensis HOM05D003446 ORTHO05D003915 2.9e-19 99.4 169 39.6
FAN16G2611 Fragaria x ananassa HOM05D003446 ORTHO05D003915 2.9e-19 99.4 151 41.1
Aqoxy1G00728 Aquilegia oxysepala HOM05D003446 ORTHO05D003915 3.7e-19 99.0 168 40.5
GSVIVG01024811001 Vitis vinifera HOM05D003446 ORTHO05D003915 4.9e-19 98.6 171 41.5
CDE03G0004 Ceratophyllum demersum HOM05D003446 ORTHO05D003915 8.3e-19 97.8 168 41.7
QL01p027392 Quercus lobata HOM05D003446 ORTHO05D003915 1.1e-18 97.4 175 41.1
QL93p2004_0016 Quercus lobata HOM05D003446 ORTHO05D003915 1.1e-18 97.4 175 41.1
RcHm_v2.0_Chr5g0068081 Rosa chinensis HOM05D003446 ORTHO05D003915 1.4e-18 97.1 169 40.2
FvH4_3g37870 Fragaria vesca HOM05D003446 ORTHO05D003915 1.9e-18 96.7 151 41.1
FAN11G3995 Fragaria x ananassa HOM05D003446 ORTHO05D003915 1.9e-18 96.7 151 41.1
FAN25G0028 Fragaria x ananassa HOM05D003446 ORTHO05D003915 1.9e-18 96.7 151 41.1
Nitab4.5_0000880g0040 Nicotiana tabacum HOM05D003446 ORTHO05D003915 1.9e-18 96.7 149 43.0
HanXRQChr05g0135531 Helianthus annuus HOM05D003446 ORTHO05D003915 2.4e-18 96.3 169 42.0
VMungo0540G2401 Vigna mungo HOM05D003446 ORTHO05D003915 3.2e-18 95.9 171 39.2
Cc01_g13730 Coffea canephora HOM05D003446 ORTHO05D003915 4.1e-18 95.5 172 39.0
Manes.02G122700 Manihot esculenta HOM05D003446 ORTHO05D003915 4.1e-18 95.5 173 40.5
Pp3c8_16060 Physcomitrium patens HOM05D003446 ORTHO05D003915 5.4e-18 95.1 168 36.9
PGR119G0877 Punica granatum HOM05D003446 ORTHO05D003915 5.4e-18 95.1 179 38.0
Atru.chr3.4056 Acer truncatum HOM05D003446 ORTHO05D003915 1.6e-17 93.6 172 40.7
CAN.G538.3 Capsicum annuum HOM05D003446 ORTHO05D003915 1.6e-17 93.6 167 40.7
Duzib168G0523 Durio zibethinus HOM05D003446 ORTHO05D003915 1.6e-17 93.6 155 41.3
Sopen06g001980 Solanum pennellii HOM05D003446 ORTHO05D003915 1.6e-17 93.6 165 39.4
AUR62020077 Chenopodium quinoa HOM05D003446 ORTHO05D003915 2.1e-17 93.2 167 39.5
SalBow2G2679 Salvia bowleyana HOM05D003446 ORTHO05D003915 2.1e-17 93.2 154 40.9
Solyc06g006000.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 2.7e-17 92.8 165 39.4
Glyma.08G334500 Glycine max HOM05D003446 ORTHO05D003915 3.5e-17 92.4 170 37.6
Prupe.6G063000 Prunus persica HOM05D003446 ORTHO05D003915 3.5e-17 92.4 149 42.3
PGSC0003DMG400020844 Solanum tuberosum HOM05D003446 ORTHO05D003915 3.5e-17 92.4 165 39.4
Lj6g0014075 Lotus japonicus HOM05D003446 ORTHO05D003915 4.6e-17 92.0 171 39.8
Lalb_Chr15g0082611 Lupinus albus HOM05D003446 ORTHO05D003915 6.0e-17 91.7 172 37.8
Medtr3g462220 Medicago truncatula HOM05D003446 ORTHO05D003915 6.0e-17 91.7 171 38.6
Potri.009G041100 Populus trichocarpa HOM05D003446 ORTHO05D003915 6.0e-17 91.7 170 37.6
Sabra09G0028900 Salix brachista HOM05D003446 ORTHO05D003915 6.0e-17 91.7 154 39.0
Gohir.D03G118800 Gossypium hirsutum HOM05D003446 ORTHO05D003915 7.8e-17 91.3 154 40.9
Dinv14473 Davidia involucrata HOM05D003446 ORTHO05D003915 1.0e-16 90.9 171 39.8
Gorai.003G125200 Gossypium raimondii HOM05D003446 ORTHO05D003915 1.0e-16 90.9 154 41.6
SGA_v2.0_scaffold77G25285 Striga asiatica HOM05D003446 ORTHO05D003915 1.0e-16 90.9 149 41.6
TAR402G0007 Trochodendron aralioides HOM05D003446 ORTHO05D003915 1.0e-16 90.9 155 41.9
Zm00001eb288700 Zea mays HOM05D003446 ORTHO05D003915 1.3e-16 90.5 169 39.1
Oeu035016.1 Olea europaea HOM05D003446 ORTHO05D003915 1.7e-16 90.1 169 37.3
Peaxi162Scf00216g01419 Petunia axillaris HOM05D003446 ORTHO05D003915 1.7e-16 90.1 167 40.1
Sed0017405 Sechium edule HOM05D003446 ORTHO05D003915 1.7e-16 90.1 179 40.2
Actinidia25129 Actinidia chinensis HOM05D003446 ORTHO05D003915 2.3e-16 89.7 171 39.8
Nn2g11351 Nelumbo nucifera HOM05D003446 ORTHO05D003915 2.3e-16 89.7 163 40.5
CiPaw.13G082900 Carya illinoinensis HOM05D003446 ORTHO05D003915 3.0e-16 89.4 157 40.1
Eucgr.J01950 Eucalyptus grandis HOM05D003446 ORTHO05D003915 3.0e-16 89.4 153 41.2
Migut.N00812 Erythranthe guttata HOM05D003446 ORTHO05D003915 5.1e-16 88.6 157 40.8
Peaxi162Scf00842g00015 Petunia axillaris HOM05D003446 ORTHO05D003915 5.1e-16 88.6 167 39.5
TPR.G30108 Trifolium pratense HOM05D003446 ORTHO05D003915 5.1e-16 88.6 171 38.6
CANSAT54G0299 Cannabis sativa HOM05D003446 ORTHO05D003915 6.6e-16 88.2 173 39.9
Haze_24238 Corylus avellana HOM05D003446 ORTHO05D003915 6.6e-16 88.2 173 39.3
Gohir.A03G048300 Gossypium hirsutum HOM05D003446 ORTHO05D003915 6.6e-16 88.2 154 40.3
COL.COLO4_19086 Corchorus olitorius HOM05D003446 ORTHO05D003915 8.6e-16 87.8 156 40.4
CiPaw.13G083100 Carya illinoinensis HOM05D003446 ORTHO05D003915 1.1e-15 87.4 158 39.9
Ca_14891_v3 Cicer arietinum L. HOM05D003446 ORTHO05D003915 1.1e-15 87.4 172 37.8
Nitab4.5_0002405g0050 Nicotiana tabacum HOM05D003446 ORTHO05D003915 1.1e-15 87.4 149 41.6
Ciclev10029307m.g Citrus clementina HOM05D003446 ORTHO05D003915 1.5e-15 87.0 161 41.0
Hma1.2p1_0017F.1_g011890 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 1.5e-15 87.0 176 34.7
MD03G1078000 Malus domestica HOM05D003446 ORTHO05D003915 1.5e-15 87.0 152 41.4
Rhsim13G0074100 Rhododendron simsii HOM05D003446 ORTHO05D003915 1.5e-15 87.0 165 40.0
SMO351G0520 Selaginella moellendorffii HOM05D003446 ORTHO05D003915 1.5e-15 87.0 154 37.7
ATR0618G355 Amborella trichopoda HOM05D003446 ORTHO05D003915 1.9e-15 86.7 165 38.8
CsaV3_1G035970 Cucumis sativus L. HOM05D003446 ORTHO05D003915 4.3e-15 85.5 164 39.6
Dinv26875 Davidia involucrata HOM05D003446 ORTHO05D003915 5.6e-15 85.1 169 35.5
Actinidia38843 Actinidia chinensis HOM05D003446 ORTHO05D003915 9.5e-15 84.3 174 37.4
AUR62001704 Chenopodium quinoa HOM05D003446 ORTHO05D003915 9.5e-15 84.3 169 36.1
Lsat_1_v5_gn_8_72121 Lactuca sativa HOM05D003446 ORTHO05D003915 9.5e-15 84.3 170 38.8
PSO339G6551 Papaver somniferum HOM05D003446 ORTHO05D003915 9.5e-15 84.3 172 36.6
EL10Ac7g16108 Beta vulgaris HOM05D003446 ORTHO05D003915 1.2e-14 84.0 169 34.9
Lj1A143T43 Lonicera japonica HOM05D003446 ORTHO05D003915 1.2e-14 84.0 161 40.4
MD11G1082600 Malus domestica HOM05D003446 ORTHO05D003915 1.2e-14 84.0 152 40.1
Phvul.002G014901 Phaseolus vulgaris HOM05D003446 ORTHO05D003915 1.6e-14 83.6 173 35.3
Sc06g0007160 Simmondsia chinensis HOM05D003446 ORTHO05D003915 1.6e-14 83.6 170 36.5
MSTRG.17869 Avicennia marina HOM05D003446 ORTHO05D003915 2.1e-14 83.2 149 39.6
CSS0014722 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 2.1e-14 83.2 170 36.5
Manes.13G117600 Manihot esculenta HOM05D003446 ORTHO05D003915 2.1e-14 83.2 175 35.4
Hma1.2p1_3153F.1_g333290 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 8.1e-14 81.3 155 36.1
SEGI_14129 Sequoiadendron giganteum HOM05D003446 ORTHO05D003915 1.1e-13 80.9 164 38.4
vmacro03001 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 1.1e-13 80.9 167 35.9
VMungo1215G1902 Vigna mungo HOM05D003446 ORTHO05D003915 1.1e-13 80.9 179 38.0
DCAR_018941 Daucus carota HOM05D003446 ORTHO05D003915 1.4e-13 80.5 155 40.0
PSO384G2641 Papaver somniferum HOM05D003446 ORTHO05D003915 1.4e-13 80.5 172 36.6
CiPaw.01G009700 Carya illinoinensis HOM05D003446 ORTHO05D003915 1.8e-13 80.1 172 34.3
Dinv30043 Davidia involucrata HOM05D003446 ORTHO05D003915 1.8e-13 80.1 173 34.1
Hund18865 Selenicereus undatus HOM05D003446 ORTHO05D003915 1.8e-13 80.1 155 37.4
Glyma.01G190300 Glycine max HOM05D003446 ORTHO05D003915 2.3e-13 79.7 158 35.4
Sabra07G0044000 Salix brachista HOM05D003446 ORTHO05D003915 2.3e-13 79.7 178 36.0
Medtr5g016450 Medicago truncatula HOM05D003446 ORTHO05D003915 3.1e-13 79.3 176 33.5
BcaNung02537 Brassica carinata HOM05D003446 ORTHO05D003915 5.2e-13 78.6 169 35.5
BcaNung02538 Brassica carinata HOM05D003446 ORTHO05D003915 5.2e-13 78.6 169 35.5
Lj2g0019205 Lotus japonicus HOM05D003446 ORTHO05D003915 5.2e-13 78.6 157 36.9
BolC1t00175H Brassica oleracea HOM05D003446 ORTHO05D003915 6.8e-13 78.2 169 35.5
Gohir.D12G071400 Gossypium hirsutum HOM05D003446 ORTHO05D003915 8.9e-13 77.8 168 34.5
Prupe.6G227700 Prunus persica HOM05D003446 ORTHO05D003915 1.2e-12 77.4 169 34.3
Ciclev10026594m.g Citrus clementina HOM05D003446 ORTHO05D003915 1.5e-12 77.0 167 34.1
BolC7t46649H Brassica oleracea HOM05D003446 ORTHO05D003915 2.6e-12 76.3 172 32.0
A01p01670 Brassica napus HOM05D003446 ORTHO05D003915 3.4e-12 75.9 169 34.3
C01p01830 Brassica napus HOM05D003446 ORTHO05D003915 3.4e-12 75.9 169 34.9
C07p62330 Brassica napus HOM05D003446 ORTHO05D003915 3.4e-12 75.9 172 32.6
BcaNung02048 Brassica carinata HOM05D003446 ORTHO05D003915 5.8e-12 75.1 172 32.6
CARHR245700 Cardamine hirsuta HOM05D003446 ORTHO05D003915 5.8e-12 75.1 172 36.0
Gorai.008G079000 Gossypium raimondii HOM05D003446 ORTHO05D003915 7.5e-12 74.7 168 33.9
RcHm_v2.0_Chr2g0106961 Rosa chinensis HOM05D003446 ORTHO05D003915 7.5e-12 74.7 177 35.0
Actinidia16456 Actinidia chinensis HOM05D003446 ORTHO05D003915 9.9e-12 74.3 179 33.5
QL06p039988 Quercus lobata HOM05D003446 ORTHO05D003915 9.9e-12 74.3 173 35.3
Hund16368 Selenicereus undatus HOM05D003446 ORTHO05D003915 1.7e-11 73.6 160 37.5
Actinidia21252 Actinidia chinensis HOM05D003446 ORTHO05D003915 2.2e-11 73.2 178 33.1
Thecc.01G064800 Theobroma cacao HOM05D003446 ORTHO05D003915 2.2e-11 73.2 175 32.6
MSTRG.2847 Avicennia marina HOM05D003446 ORTHO05D003915 3.7e-11 72.4 180 32.8
BraA01t00157Z Brassica rapa HOM05D003446 ORTHO05D003915 3.7e-11 72.4 169 33.7
GSVIVG01000208001 Vitis vinifera HOM05D003446 ORTHO05D003915 3.7e-11 72.4 173 33.5
AT4G37300 Arabidopsis thaliana HOM05D003446 ORTHO05D003915 4.9e-11 72.0 180 35.0
Gohir.A12G074100 Gossypium hirsutum HOM05D003446 ORTHO05D003915 4.9e-11 72.0 168 33.3
HanXRQChr15g0491841 Helianthus annuus HOM05D003446 ORTHO05D003915 4.9e-11 72.0 168 34.5
MD02G1179600 Malus domestica HOM05D003446 ORTHO05D003915 4.9e-11 72.0 152 34.9
Sp7g34970 Schrenkiella parvula HOM05D003446 ORTHO05D003915 4.9e-11 72.0 173 32.4
Sopen02g037450 Solanum pennellii HOM05D003446 ORTHO05D003915 4.9e-11 72.0 154 35.1
PGSC0003DMG400024982 Solanum tuberosum HOM05D003446 ORTHO05D003915 4.9e-11 72.0 154 35.1
vmacro17976 Vaccinium macrocarpon HOM05D003446 ORTHO05D003915 8.3e-11 71.2 159 32.7
EL10Ac6g15684 Beta vulgaris HOM05D003446 ORTHO05D003915 1.1e-10 70.9 161 37.3
Pp3c23_2900 Physcomitrium patens HOM05D003446 ORTHO05D003915 1.4e-10 70.5 159 32.1
FvH4_1g16910 Fragaria vesca HOM05D003446 ORTHO05D003915 1.9e-10 70.1 176 32.4
Solyc02g092880.3 Solanum lycopersicum HOM05D003446 ORTHO05D003915 1.9e-10 70.1 154 35.1
Cfa004075 Carpinus fangiana HOM05D003446 ORTHO05D003915 2.4e-10 69.7 181 32.6
Glyma.11G051900 Glycine max HOM05D003446 ORTHO05D003915 2.4e-10 69.7 148 35.1
Potri.007G049800 Populus trichocarpa HOM05D003446 ORTHO05D003915 2.4e-10 69.7 173 33.5
TPR.G26863 Trifolium pratense HOM05D003446 ORTHO05D003915 2.4e-10 69.7 159 35.2
FAN19G2839 Fragaria x ananassa HOM05D003446 ORTHO05D003915 3.2e-10 69.3 174 32.8
arahy.Tifrunner.gnm1.ann1.SZPL62 Arachis hypogaea HOM05D003446 ORTHO05D003915 4.1e-10 68.9 158 34.8
FAN28G0024 Fragaria x ananassa HOM05D003446 ORTHO05D003915 4.1e-10 68.9 173 33.5
Aa31LG6G14170 Aethionema arabicum HOM05D003446 ORTHO05D003915 5.4e-10 68.6 174 35.1
AL7G13540 Arabidopsis lyrata HOM05D003446 ORTHO05D003915 5.4e-10 68.6 177 33.3
Lsat_1_v5_gn_4_162940 Lactuca sativa HOM05D003446 ORTHO05D003915 5.4e-10 68.6 153 32.7
PGR004G1858 Punica granatum HOM05D003446 ORTHO05D003915 7.1e-10 68.2 178 30.9
Duzib187G1258 Durio zibethinus HOM05D003446 ORTHO05D003915 1.2e-09 67.4 160 33.1
Haze_15338 Corylus avellana HOM05D003446 ORTHO05D003915 1.6e-09 67.0 179 32.4
Eucgr.I00795 Eucalyptus grandis HOM05D003446 ORTHO05D003915 1.6e-09 67.0 178 33.1
TAR376G0778 Trochodendron aralioides HOM05D003446 ORTHO05D003915 2.1e-09 66.6 182 33.0
TAR381G0964 Trochodendron aralioides HOM05D003446 ORTHO05D003915 2.1e-09 66.6 166 33.1
Thhalv10026399m.g Eutrema salsugineum HOM05D003446 ORTHO05D003915 2.7e-09 66.2 173 33.5
MBI14_g32938_MAGBIO Magnolia biondii HOM05D003446 ORTHO05D003915 2.7e-09 66.2 130 40.0
Hma1.2p1_0227F.1_g096150 Hydrangea macrophylla HOM05D003446 ORTHO05D003915 3.5e-09 65.9 98 42.9
TWI53G2047 Tripterygium wilfordii HOM05D003446 ORTHO05D003915 3.5e-09 65.9 168 32.7
CsaV3_2G035470 Cucumis sativus L. HOM05D003446 ORTHO05D003915 4.6e-09 65.5 158 32.9
BcaNung02955 Brassica carinata HOM05D003446 ORTHO05D003915 6.0e-09 65.1 181 28.7
THA.LOC104819864 Tarenaya hassleriana HOM05D003446 ORTHO05D003915 7.8e-09 64.7 177 36.2
HPP92_012623 Vanilla planifolia HOM05D003446 ORTHO05D003915 1.0e-08 64.3 124 41.1
Carub.0007s0298 Capsella rubella HOM05D003446 ORTHO05D003915 1.7e-08 63.5 154 35.1
Eucgr.I00751 Eucalyptus grandis HOM05D003446 ORTHO05D003915 3.0e-08 62.8 162 34.0
ClCG03G000970 Citrullus lanatus HOM05D003446 ORTHO05D003915 1.1e-07 60.8 119 37.8
Cc07_g06490 Coffea canephora HOM05D003446 ORTHO05D003915 1.1e-07 60.8 158 32.9
CSS0024799 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 1.9e-07 60.1 161 32.9
COL.COLO4_11498 Corchorus olitorius HOM05D003446 ORTHO05D003915 1.9e-07 60.1 136 33.1
Psat5g162520 Pisum sativum HOM05D003446 ORTHO05D003915 1.9e-07 60.1 111 42.3
CiPaw.08G174200 Carya illinoinensis HOM05D003446 ORTHO05D003915 2.5e-07 59.7 112 33.9
CSS0013529 Camellia sinensis var. sinensis HOM05D003446 ORTHO05D003915 3.3e-07 59.3 160 31.9
MELO3C020570.2 Cucumis melo HOM05D003446 ORTHO05D003915 7.3e-07 58.2 126 36.5
Cpa.g.sc6.90 Carica papaya HOM05D003446 ORTHO05D003915 9.5e-07 57.8 178 32.6
Ca_24736_v3 Cicer arietinum L. HOM05D003446 ORTHO05D003915 1.6e-06 57.0 173 30.6


User provided reference genes

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