Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0077 Marchantia polymorpha HOM05D005440 ORTHO05D007314 0.0e+00 1199.1 584 100.0
Pp3c17_14810 Physcomitrium patens HOM05D005440 ORTHO05D007314 1.4e-142 510.8 556 51.4
SEGI_34757 Sequoiadendron giganteum HOM05D005440 ORTHO05D007314 1.6e-138 497.3 576 48.6
Nn5g27478 Nelumbo nucifera HOM05D005440 ORTHO05D007314 1.5e-136 490.7 542 48.9
TAR627G1033 Trochodendron aralioides HOM05D005440 ORTHO05D007314 9.9e-136 488.0 547 50.1
PGR004G2684 Punica granatum HOM05D005440 ORTHO05D007314 1.3e-135 487.6 544 49.1
TPR.G33572 Trifolium pratense HOM05D005440 ORTHO05D007314 3.8e-135 486.1 542 49.8
Ciclev10011552m.g Citrus clementina HOM05D005440 ORTHO05D007314 4.9e-135 485.7 550 48.5
Sc15g0002420 Simmondsia chinensis HOM05D005440 ORTHO05D007314 1.4e-134 484.2 554 49.1
Ca_16308_v3 Cicer arietinum L. HOM05D005440 ORTHO05D007314 3.2e-134 483.0 542 49.6
GSVIVG01026115001 Vitis vinifera HOM05D005440 ORTHO05D007314 9.3e-134 481.5 540 49.3
Medtr3g081180 Medicago truncatula HOM05D005440 ORTHO05D007314 1.6e-133 480.7 542 48.9
FAN02G0818 Fragaria x ananassa HOM05D005440 ORTHO05D007314 2.1e-133 480.3 538 47.4
Phvul.006G001800 Phaseolus vulgaris HOM05D005440 ORTHO05D007314 2.1e-133 480.3 546 48.9
MELO3C026396.2 Cucumis melo HOM05D005440 ORTHO05D007314 4.6e-133 479.2 542 50.2
Hma1.2p1_1803F.1_g302990 Hydrangea macrophylla HOM05D005440 ORTHO05D007314 7.8e-133 478.4 544 48.2
Lalb_Chr24g0402811 Lupinus albus HOM05D005440 ORTHO05D007314 7.8e-133 478.4 545 48.8
CsaV3_4G032220 Cucumis sativus L. HOM05D005440 ORTHO05D007314 1.0e-132 478.0 542 49.4
Potri.016G021900 Populus trichocarpa HOM05D005440 ORTHO05D007314 3.0e-132 476.5 551 48.6
Lj6g0026846 Lotus japonicus HOM05D005440 ORTHO05D007314 3.9e-132 476.1 557 48.7
MD17G1127100 Malus domestica HOM05D005440 ORTHO05D007314 5.1e-132 475.7 559 48.5
Os05g0511300 Oryza sativa ssp. japonica HOM05D005440 ORTHO05D007314 5.1e-132 475.7 535 49.5
Cfa023527 Carpinus fangiana HOM05D005440 ORTHO05D007314 6.6e-132 475.3 540 49.1
Sopen05g034920 Solanum pennellii HOM05D005440 ORTHO05D007314 8.7e-132 474.9 558 47.0
CAN.G1156.52 Capsicum annuum HOM05D005440 ORTHO05D007314 1.1e-131 474.6 540 48.0
Glyma.13G003900 Glycine max HOM05D005440 ORTHO05D007314 1.1e-131 474.6 544 48.9
Solyc05g056520.4 Solanum lycopersicum HOM05D005440 ORTHO05D007314 1.5e-131 474.2 558 47.0
Eucgr.K01335 Eucalyptus grandis HOM05D005440 ORTHO05D007314 2.5e-131 473.4 563 46.2
MSTRG.15262 Avicennia marina HOM05D005440 ORTHO05D007314 3.3e-131 473.0 544 48.3
Potri.006G023400 Populus trichocarpa HOM05D005440 ORTHO05D007314 4.3e-131 472.6 540 48.5
AL4G27520 Arabidopsis lyrata HOM05D005440 ORTHO05D007314 5.6e-131 472.2 540 47.2
Atru.chr5.954 Acer truncatum HOM05D005440 ORTHO05D007314 7.3e-131 471.9 540 48.3
Prupe.3G188100 Prunus persica HOM05D005440 ORTHO05D007314 7.3e-131 471.9 540 49.4
FvH4_6g39770 Fragaria vesca HOM05D005440 ORTHO05D007314 9.6e-131 471.5 536 48.1
Lalb_Chr22g0360841 Lupinus albus HOM05D005440 ORTHO05D007314 1.3e-130 471.1 540 48.0
HPP92_001868 Vanilla planifolia HOM05D005440 ORTHO05D007314 2.1e-130 470.3 547 47.5
Glyma.20G065600 Glycine max HOM05D005440 ORTHO05D007314 1.1e-129 468.0 546 49.3
CANSAT64G0070 Cannabis sativa HOM05D005440 ORTHO05D007314 1.4e-129 467.6 558 47.8
Gorai.001G092600 Gossypium raimondii HOM05D005440 ORTHO05D007314 1.8e-129 467.2 541 47.7
MD09G1136900 Malus domestica HOM05D005440 ORTHO05D007314 2.4e-129 466.8 540 47.8
Gohir.A07G081000 Gossypium hirsutum HOM05D005440 ORTHO05D007314 3.1e-129 466.5 546 47.8
CiPaw.04G136100 Carya illinoinensis HOM05D005440 ORTHO05D007314 5.3e-129 465.7 549 47.2
Manes.09G077000 Manihot esculenta HOM05D005440 ORTHO05D007314 5.3e-129 465.7 542 48.9
Carub.0004s1349 Capsella rubella HOM05D005440 ORTHO05D007314 6.9e-129 465.3 543 46.6
AT2G32170 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 9.0e-129 464.9 542 46.1
Aqoxy1G01485 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 1.2e-128 464.5 536 49.1
THA.LOC104826162 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 1.2e-128 464.5 541 47.0
BcaC02g07946 Brassica carinata HOM05D005440 ORTHO05D007314 2.6e-128 463.4 541 47.7
BolC4t27650H Brassica oleracea HOM05D005440 ORTHO05D007314 2.6e-128 463.4 541 47.7
Duzib138G1709 Durio zibethinus HOM05D005440 ORTHO05D007314 2.6e-128 463.4 540 48.1
PSO675G6996 Papaver somniferum HOM05D005440 ORTHO05D007314 2.6e-128 463.4 553 47.2
Zm00001eb292540 Zea mays HOM05D005440 ORTHO05D007314 2.6e-128 463.4 541 47.5
ECA233G3205 Erigeron canadensis HOM05D005440 ORTHO05D007314 5.8e-128 462.2 542 48.9
THA.LOC104800970 Tarenaya hassleriana HOM05D005440 ORTHO05D007314 7.6e-128 461.8 541 47.3
FAN14G2598 Fragaria x ananassa HOM05D005440 ORTHO05D007314 9.9e-128 461.5 538 47.6
Gohir.D07G086600 Gossypium hirsutum HOM05D005440 ORTHO05D007314 9.9e-128 461.5 551 47.5
Sp4g14550 Schrenkiella parvula HOM05D005440 ORTHO05D007314 1.3e-127 461.1 541 46.2
RcHm_v2.0_Chr2g0153881 Rosa chinensis HOM05D005440 ORTHO05D007314 1.7e-127 460.7 542 47.0
Cc07_g20260 Coffea canephora HOM05D005440 ORTHO05D007314 3.8e-127 459.5 557 46.9
HanXRQChr15g0468881 Helianthus annuus HOM05D005440 ORTHO05D007314 3.8e-127 459.5 545 47.9
AagrBONN_evm.TU.Sc2ySwM_368.3314 Anthoceros agrestis HOM05D005440 ORTHO05D007314 6.4e-127 458.8 545 47.0
C04p61670 Brassica napus HOM05D005440 ORTHO05D007314 8.4e-127 458.4 541 47.0
ATR0763G213 Amborella trichopoda HOM05D005440 ORTHO05D007314 1.1e-126 458.0 541 48.1
A04p24740 Brassica napus HOM05D005440 ORTHO05D007314 2.4e-126 456.8 541 46.6
CARHR125970 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.4e-126 456.8 542 47.0
Sed0022130 Sechium edule HOM05D005440 ORTHO05D007314 1.6e-125 454.1 541 47.0
Duzib133G0846 Durio zibethinus HOM05D005440 ORTHO05D007314 2.1e-125 453.8 552 46.9
Pp3c1_31970 Physcomitrium patens HOM05D005440 ORTHO05D007314 3.5e-125 453.0 563 46.5
TWI60G0164 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 3.5e-125 453.0 539 47.5
BcaB06g28584 Brassica carinata HOM05D005440 ORTHO05D007314 7.9e-125 451.8 541 46.0
Migut.L00575 Erythranthe guttata HOM05D005440 ORTHO05D007314 8.1e-122 441.8 530 47.7
BraA04t17992Z Brassica rapa HOM05D005440 ORTHO05D007314 3.1e-121 439.9 593 43.5
CSS0043590 Camellia sinensis var. sinensis HOM05D005440 ORTHO05D007314 3.1e-121 439.9 540 47.4
Sabra16G0027400 Salix brachista HOM05D005440 ORTHO05D007314 3.1e-121 439.9 542 46.1
DCAR_019996 Daucus carota HOM05D005440 ORTHO05D007314 9.0e-121 438.3 539 44.9
Peaxi162Scf00525g00411 Petunia axillaris HOM05D005440 ORTHO05D007314 4.9e-119 432.6 540 45.0
MBI18_g10015_MAGBIO Magnolia biondii HOM05D005440 ORTHO05D007314 2.1e-117 427.2 517 47.0
PSO541G5910 Papaver somniferum HOM05D005440 ORTHO05D007314 2.1e-117 427.2 548 45.3
Rhsim12G0014000 Rhododendron simsii HOM05D005440 ORTHO05D007314 3.5e-117 426.4 511 47.7
TWI60G0012 Tripterygium wilfordii HOM05D005440 ORTHO05D007314 4.6e-117 426.0 539 44.0
AUR62017608 Chenopodium quinoa HOM05D005440 ORTHO05D007314 1.0e-116 424.9 546 46.2
EL10Ac9g22859 Beta vulgaris HOM05D005440 ORTHO05D007314 1.6e-114 417.5 292 66.8
CDE06G0633 Ceratophyllum demersum HOM05D005440 ORTHO05D007314 1.7e-111 407.5 272 71.0
AUR62015149 Chenopodium quinoa HOM05D005440 ORTHO05D007314 2.2e-111 407.1 560 43.0
Potri.016G021400 Populus trichocarpa HOM05D005440 ORTHO05D007314 6.5e-111 405.6 551 43.9
AT2G32160 Arabidopsis thaliana HOM05D005440 ORTHO05D007314 3.2e-110 403.3 537 42.3
Sabra16G0024900 Salix brachista HOM05D005440 ORTHO05D007314 4.2e-110 402.9 542 44.1
unitig_32.g10657 Utricularia gibba HOM05D005440 ORTHO05D007314 4.2e-110 402.9 542 43.2
QL04p060188 Quercus lobata HOM05D005440 ORTHO05D007314 2.1e-109 400.6 261 71.3
arahy.Tifrunner.gnm1.ann1.TU4NXX Arachis hypogaea HOM05D005440 ORTHO05D007314 6.0e-109 399.1 529 45.4
Thhalv10017571m.g Eutrema salsugineum HOM05D005440 ORTHO05D007314 6.0e-109 399.1 299 63.2
Actinidia12520 Actinidia chinensis HOM05D005440 ORTHO05D007314 2.3e-108 397.1 530 43.8
SalBow5G0813 Salvia bowleyana HOM05D005440 ORTHO05D007314 6.2e-106 389.0 261 68.2
CBR_g29536 Chara braunii HOM05D000019 ORTHO05D000048 1.1e-105 388.3 647 39.9
vmacro08748 Vaccinium macrocarpon HOM05D005440 ORTHO05D007314 2.4e-105 387.1 542 42.4
Aa31LG5G4880 Aethionema arabicum HOM05D005440 ORTHO05D007314 1.7e-103 380.9 541 42.5
Carub.0004s1348 Capsella rubella HOM05D005440 ORTHO05D007314 7.9e-101 372.1 536 39.4
Cpa.g.sc8.301 Carica papaya HOM05D005440 ORTHO05D007314 1.3e-100 371.3 465 44.7
Oeu053137.1 Olea europaea HOM05D005440 ORTHO05D007314 1.1e-99 368.2 531 41.8
ClCG11G016720 Citrullus lanatus HOM05D005440 ORTHO05D007314 1.5e-99 367.9 541 41.4
DCAR_009586 Daucus carota HOM05D005440 ORTHO05D007314 5.7e-99 365.9 243 69.5
FAN05G0095 Fragaria x ananassa HOM05D005440 ORTHO05D007314 7.7e-96 355.5 539 40.1
SMO358G0560 Selaginella moellendorffii HOM05D005440 ORTHO05D007314 8.5e-95 352.1 226 69.9
Lsat_1_v5_gn_5_68301 Lactuca sativa HOM05D005440 ORTHO05D007314 1.8e-92 344.4 527 39.7
Nitab4.5_0000496g0020 Nicotiana tabacum HOM05D005440 ORTHO05D007314 5.1e-92 342.8 514 41.6
Haze_13637 Corylus avellana HOM05D005440 ORTHO05D007314 3.1e-89 333.6 274 59.5
FAN09G4325 Fragaria x ananassa HOM05D005440 ORTHO05D007314 1.0e-84 318.5 286 54.9
Thecc.01G171200 Theobroma cacao HOM05D005440 ORTHO05D007314 2.8e-82 310.5 430 42.6
Cre03.g188950 Chlamydomonas reinhardtii HOM05D005440 ORTHO05D007314 1.0e-79 302.0 263 54.8
Sabra06G0017100 Salix brachista HOM05D005440 ORTHO05D007314 8.5e-79 298.9 581 37.3
arahy.Tifrunner.gnm1.ann1.Z94T11 Arachis hypogaea HOM05D005440 ORTHO05D007314 1.7e-71 274.6 261 55.6
MCO05G304 Micromonas commoda HOM05D005440 ORTHO05D007314 2.2e-71 274.2 274 50.0
Dinv02983 Davidia involucrata HOM05D005440 ORTHO05D007314 9.4e-70 268.9 913 26.6
Psat5g108080 Pisum sativum HOM05D005440 ORTHO05D007314 4.7e-69 266.5 406 40.6
Sabra16G0025200 Salix brachista HOM05D005440 ORTHO05D007314 4.8e-66 256.5 542 33.0
PRCOL_00002828 Prasinoderma coloniale HOM05D005440 ORTHO05D007314 4.1e-65 253.4 287 45.3
CARHR125960 Cardamine hirsuta HOM05D005440 ORTHO05D007314 2.9e-63 247.3 200 57.0
Nitab4.5_0002704g0030 Nicotiana tabacum HOM05D005440 ORTHO05D007314 2.7e-56 224.2 492 35.6
Sabra16G0027100 Salix brachista HOM05D005440 ORTHO05D007314 1.0e-55 222.2 542 30.8
Ah.01g013380 Amaranthus hybridus HOM05D005440 ORTHO05D007314 1.5e-54 218.4 140 71.4
Cfa026418 Carpinus fangiana HOM05D005440 ORTHO05D007314 2.1e-53 214.5 293 38.9
Atru.ctg1434.11 Acer truncatum HOM05D005440 ORTHO05D007314 8.0e-53 212.6 305 40.0
SGA_v2.0_scaffold35G13960 Striga asiatica HOM05D005440 ORTHO05D007314 1.8e-49 201.4 143 65.0
Psat5g108160 Pisum sativum HOM05D005440 ORTHO05D007314 4.3e-46 190.3 125 72.8
Lj4C830T18 Lonicera japonica HOM05D005440 ORTHO05D007314 1.1e-38 165.6 113 65.5
Aqoxy1G03388 Aquilegia oxysepala HOM05D005440 ORTHO05D007314 3.1e-36 157.5 275 37.8
CARHR125950 Cardamine hirsuta HOM05D005440 ORTHO05D007314 8.3e-34 149.4 102 66.7
Hund08219 Selenicereus undatus HOM05D005440 ORTHO05D007314 3.5e-32 144.1 86 76.7
Lj4A830T38 Lonicera japonica HOM05D005440 ORTHO05D007314 3.5e-16 90.9 79 55.7
RcHm_v2.0_Chr2g0172691 Rosa chinensis HOM05D005440 ORTHO05D007314 3.3e-14 84.3 57 63.2
Hund08218 Selenicereus undatus HOM05D005440 ORTHO05D007314 4.3e-14 84.0 103 41.7
SEGI_40090 Sequoiadendron giganteum HOM05D005440 ORTHO05D034043 6.2e-13 80.1 59 59.3
CARHR125940 Cardamine hirsuta HOM05D005440 ORTHO05D034043 3.5e-08 64.3 82 36.6
RcHm_v2.0_Chr5g0059521 Rosa chinensis HOM05D005440 ORTHO05D007314 1.3e-07 62.4 37 73.0
CAN.G62.19 Capsicum annuum HOM05D001673 ORTHO05D013418 1.5e-06 58.9 52 48.1
CAN.G80.1 Capsicum annuum HOM05D001673 ORTHO05D022156 5.6e-06 57.0 62 38.7


User provided reference genes

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