Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0047 Marchantia polymorpha HOM05D004508 ORTHO05D005180 7.2e-256 886.7 441 100.0
AagrBONN_evm.TU.Sc2ySwM_344.736 Anthoceros agrestis HOM05D004508 ORTHO05D005180 4.7e-130 468.8 399 59.1
Pp3c2_10920 Physcomitrium patens HOM05D004508 ORTHO05D005180 3.8e-124 449.1 397 56.4
SMO165G0061 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 1.5e-120 437.2 383 57.2
SEGI_30484 Sequoiadendron giganteum HOM05D004508 ORTHO05D005180 5.4e-118 428.7 397 53.4
Pp3c14_15790 Physcomitrium patens HOM05D004508 ORTHO05D005180 4.5e-117 425.6 394 54.3
SMO230G0075 Selaginella moellendorffii HOM05D004508 ORTHO05D005180 5.6e-115 418.7 388 52.3
Eucgr.D01989 Eucalyptus grandis HOM05D004508 ORTHO05D005180 1.6e-114 417.2 377 53.3
Manes.01G073700 Manihot esculenta HOM05D004508 ORTHO05D005180 4.0e-113 412.5 375 52.8
BcaC04g21205 Brassica carinata HOM05D004508 ORTHO05D005180 1.5e-112 410.6 376 52.9
C09p34340 Brassica napus HOM05D004508 ORTHO05D005180 1.5e-112 410.6 376 52.9
Nitab4.5_0003534g0110 Nicotiana tabacum HOM05D004508 ORTHO05D005180 1.5e-112 410.6 379 55.4
Sp6g05370 Schrenkiella parvula HOM05D004508 ORTHO05D005180 3.4e-112 409.5 376 52.9
BolC9t56277H Brassica oleracea HOM05D004508 ORTHO05D005180 5.8e-112 408.7 374 52.7
AagrBONN_evm.TU.Sc2ySwM_344.739 Anthoceros agrestis HOM05D004508 ORTHO05D005180 7.5e-112 408.3 399 53.9
CAN.G630.82 Capsicum annuum HOM05D004508 ORTHO05D005180 7.5e-112 408.3 376 53.7
Nitab4.5_0007591g0010 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.2e-111 406.8 378 54.5
Nitab4.5_0005465g0020 Nicotiana tabacum HOM05D004508 ORTHO05D005180 2.9e-111 406.4 376 54.5
A09p27030 Brassica napus HOM05D004508 ORTHO05D005180 1.1e-110 404.4 376 52.9
BraA09t38274Z Brassica rapa HOM05D004508 ORTHO05D005180 1.1e-110 404.4 376 52.9
Hund14651 Selenicereus undatus HOM05D004508 ORTHO05D005180 2.4e-110 403.3 378 54.5
BcaB01g01727 Brassica carinata HOM05D004508 ORTHO05D005180 7.0e-110 401.7 376 51.9
FAN08G3098 Fragaria x ananassa HOM05D004508 ORTHO05D005180 7.0e-110 401.7 382 52.6
Gohir.A12G221000 Gossypium hirsutum HOM05D004508 ORTHO05D005180 9.2e-110 401.4 376 51.3
CARHR254050 Cardamine hirsuta HOM05D004508 ORTHO05D005180 1.2e-109 401.0 376 51.6
Thhalv10028714m.g Eutrema salsugineum HOM05D004508 ORTHO05D005180 1.2e-109 401.0 376 51.9
Solyc08g079470.3 Solanum lycopersicum HOM05D004508 ORTHO05D005180 1.2e-109 401.0 380 52.1
Prupe.5G079500 Prunus persica HOM05D004508 ORTHO05D005180 1.6e-109 400.6 377 52.3
Sc07g0009440 Simmondsia chinensis HOM05D004508 ORTHO05D005180 1.6e-109 400.6 378 54.0
FvH4_5g00670 Fragaria vesca HOM05D004508 ORTHO05D005180 2.0e-109 400.2 382 52.6
PGSC0003DMG400003935 Solanum tuberosum HOM05D004508 ORTHO05D005180 2.0e-109 400.2 369 54.5
BcaB01g02657 Brassica carinata HOM05D004508 ORTHO05D005180 3.5e-109 399.4 363 52.6
Gohir.D12G223300 Gossypium hirsutum HOM05D004508 ORTHO05D005180 3.5e-109 399.4 376 51.3
Gorai.008G239600 Gossypium raimondii HOM05D004508 ORTHO05D005180 3.5e-109 399.4 376 51.3
AL6G47050 Arabidopsis lyrata HOM05D004508 ORTHO05D005180 6.0e-109 398.7 378 52.1
BraA03t12150Z Brassica rapa HOM05D004508 ORTHO05D005180 1.3e-108 397.5 367 51.8
Sopen08g027840 Solanum pennellii HOM05D004508 ORTHO05D005180 1.3e-108 397.5 367 53.1
CANSAT21G2188 Cannabis sativa HOM05D004508 ORTHO05D005180 1.7e-108 397.1 383 52.0
FAN18G1402 Fragaria x ananassa HOM05D004508 ORTHO05D005180 1.7e-108 397.1 382 52.4
Duzib205G1463 Durio zibethinus HOM05D004508 ORTHO05D005180 3.0e-108 396.4 378 51.9
FAN13G3174 Fragaria x ananassa HOM05D004508 ORTHO05D005180 3.0e-108 396.4 382 52.1
Aa31LG11G5140 Aethionema arabicum HOM05D004508 ORTHO05D005180 5.0e-108 395.6 378 50.8
Dinv37763 Davidia involucrata HOM05D004508 ORTHO05D005180 5.0e-108 395.6 388 50.3
FAN04G0404 Fragaria x ananassa HOM05D004508 ORTHO05D005180 5.0e-108 395.6 375 52.0
CiPaw.11G147500 Carya illinoinensis HOM05D004508 ORTHO05D005180 6.6e-108 395.2 377 51.5
Carub.0006s3132 Capsella rubella HOM05D004508 ORTHO05D005180 8.6e-108 394.8 378 51.3
AT4G12130 Arabidopsis thaliana HOM05D004508 ORTHO05D005180 1.1e-107 394.4 378 51.3
Cpa.g.sc29.91 Carica papaya HOM05D004508 ORTHO05D005180 1.1e-107 394.4 382 51.6
PGR031G2216 Punica granatum HOM05D004508 ORTHO05D005180 1.5e-107 394.0 369 52.6
ATR0757G012 Amborella trichopoda HOM05D004508 ORTHO05D005180 3.3e-107 392.9 380 53.7
Aa31LG9G10340 Aethionema arabicum HOM05D004508 ORTHO05D005180 4.3e-107 392.5 378 50.3
Atru.chr9.1431 Acer truncatum HOM05D004508 ORTHO05D005180 5.6e-107 392.1 383 50.9
RcHm_v2.0_Chr4g0419741 Rosa chinensis HOM05D004508 ORTHO05D005180 5.6e-107 392.1 382 51.8
BcaC01g04604 Brassica carinata HOM05D004508 ORTHO05D005180 7.3e-107 391.7 373 51.2
TWI60G0362 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 7.3e-107 391.7 367 52.0
TAR374G1167 Trochodendron aralioides HOM05D004508 ORTHO05D005180 1.6e-106 390.6 366 52.5
Thecc.03G261800 Theobroma cacao HOM05D004508 ORTHO05D005180 2.8e-106 389.8 378 52.1
Ca_16218_v3 Cicer arietinum L. HOM05D004508 ORTHO05D005180 3.6e-106 389.4 409 47.2
TWI81G0341 Tripterygium wilfordii HOM05D004508 ORTHO05D005180 3.6e-106 389.4 374 52.7
CSS0042805 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 4.7e-106 389.0 389 50.9
Glyma.11G029800 Glycine max HOM05D004508 ORTHO05D005180 4.7e-106 389.0 368 49.7
BolC3t15891H Brassica oleracea HOM05D004508 ORTHO05D005180 6.2e-106 388.7 364 50.8
SGA_v2.0_scaffold25G11118 Striga asiatica HOM05D004508 ORTHO05D005180 8.0e-106 388.3 372 51.6
GSVIVG01004911001 Vitis vinifera HOM05D004508 ORTHO05D005180 1.1e-105 387.9 367 51.8
EL10Ac5g12616 Beta vulgaris HOM05D004508 ORTHO05D005180 1.8e-105 387.1 372 53.0
Lj2g0024595 Lotus japonicus HOM05D004508 ORTHO05D005180 2.3e-105 386.7 383 49.6
Rhsim07G0101600 Rhododendron simsii HOM05D004508 ORTHO05D005180 2.3e-105 386.7 384 50.3
Hma1.2p1_0108F.1_g051860 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 3.1e-105 386.3 378 50.8
MSTRG.12061 Avicennia marina HOM05D004508 ORTHO05D005180 4.0e-105 386.0 381 50.7
arahy.Tifrunner.gnm1.ann1.CN31X8 Arachis hypogaea HOM05D004508 ORTHO05D005180 5.2e-105 385.6 376 48.9
arahy.Tifrunner.gnm1.ann1.VMS6QR Arachis hypogaea HOM05D004508 ORTHO05D005180 5.2e-105 385.6 376 48.9
SalBow5G3960 Salvia bowleyana HOM05D004508 ORTHO05D005180 5.2e-105 385.6 386 51.0
CDE04G2826 Ceratophyllum demersum HOM05D004508 ORTHO05D005180 6.8e-105 385.2 377 51.2
RcHm_v2.0_Chr7g0201591 Rosa chinensis HOM05D004508 ORTHO05D005180 6.8e-105 385.2 382 51.3
CSS0027133 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 8.9e-105 384.8 366 52.2
Aa31LG11G5170 Aethionema arabicum HOM05D004508 ORTHO05D005180 1.2e-104 384.4 390 49.0
SalBow5G2183 Salvia bowleyana HOM05D004508 ORTHO05D005180 1.2e-104 384.4 386 51.0
SGA_v2.0_scaffold146G36178 Striga asiatica HOM05D004508 ORTHO05D005180 1.5e-104 384.0 372 51.6
Potri.001G117700 Populus trichocarpa HOM05D004508 ORTHO05D005180 2.0e-104 383.6 373 50.4
Os06g0134800 Oryza sativa ssp. japonica HOM05D004508 ORTHO05D005180 3.4e-104 382.9 394 50.5
Phvul.002G060100 Phaseolus vulgaris HOM05D004508 ORTHO05D005180 3.4e-104 382.9 374 48.9
Haze_02980 Corylus avellana HOM05D004508 ORTHO05D005180 4.4e-104 382.5 400 49.2
MD04G1079500 Malus domestica HOM05D004508 ORTHO05D005180 4.4e-104 382.5 380 50.5
Medtr3g078637 Medicago truncatula HOM05D004508 ORTHO05D005180 4.4e-104 382.5 380 47.6
Peaxi162Scf00271g00023 Petunia axillaris HOM05D004508 ORTHO05D005180 4.4e-104 382.5 381 52.2
Ah.12g058230 Amaranthus hybridus HOM05D004508 ORTHO05D005180 7.5e-104 381.7 366 51.9
QL12p014971 Quercus lobata HOM05D004508 ORTHO05D005180 7.5e-104 381.7 377 49.6
ClCG10G003140 Citrullus lanatus HOM05D004508 ORTHO05D005180 9.8e-104 381.3 400 49.2
Hma1.2p1_1654F.1_g295900 Hydrangea macrophylla HOM05D004508 ORTHO05D005180 1.7e-103 380.6 385 49.9
vmacro14042 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 2.2e-103 380.2 403 49.1
Ciclev10020216m.g Citrus clementina HOM05D004508 ORTHO05D005180 1.1e-102 377.9 408 48.0
Lj8C255T7 Lonicera japonica HOM05D004508 ORTHO05D005180 1.1e-102 377.9 384 50.0
Actinidia27434 Actinidia chinensis HOM05D004508 ORTHO05D005180 7.1e-102 375.2 378 49.2
Zm00001eb377920 Zea mays HOM05D004508 ORTHO05D005180 1.2e-101 374.4 389 50.1
PSO782G0229 Papaver somniferum HOM05D004508 ORTHO05D005180 2.1e-101 373.6 394 48.7
Sed0020035 Sechium edule HOM05D004508 ORTHO05D005180 2.1e-101 373.6 376 50.3
CsaV3_3G003200 Cucumis sativus L. HOM05D004508 ORTHO05D005180 4.6e-101 372.5 390 49.0
Gorai.003G166400 Gossypium raimondii HOM05D004508 ORTHO05D005180 7.8e-101 371.7 375 49.9
HanXRQChr17g0549071 Helianthus annuus HOM05D004508 ORTHO05D005180 3.9e-100 369.4 384 49.7
Lalb_Chr25g0283101 Lupinus albus HOM05D004508 ORTHO05D005180 3.9e-100 369.4 380 47.6
Cc08_g13230 Coffea canephora HOM05D004508 ORTHO05D005180 5.1e-100 369.0 373 50.4
Lsat_1_v5_gn_3_3920 Lactuca sativa HOM05D004508 ORTHO05D005180 3.3e-99 366.3 385 47.5
HPP92_014982 Vanilla planifolia HOM05D004508 ORTHO05D005180 7.3e-99 365.2 390 48.7
HPP92_014947 Vanilla planifolia HOM05D004508 ORTHO05D005180 9.5e-99 364.8 390 48.5
C03p35810 Brassica napus HOM05D004508 ORTHO05D005180 1.1e-97 361.3 326 53.4
VMungo1215G0237 Vigna mungo HOM05D004508 ORTHO05D005180 1.1e-97 361.3 351 50.1
unitig_8.g3903 Utricularia gibba HOM05D004508 ORTHO05D005180 8.9e-97 358.2 359 51.0
AUR62010510 Chenopodium quinoa HOM05D004508 ORTHO05D005180 2.2e-95 353.6 374 48.9
ECA246G1898 Erigeron canadensis HOM05D004508 ORTHO05D005180 3.2e-94 349.7 394 45.9
COL.COLO4_23880 Corchorus olitorius HOM05D004508 ORTHO05D005180 4.1e-94 349.4 376 46.5
PSO478G4546 Papaver somniferum HOM05D004508 ORTHO05D005180 4.1e-94 349.4 429 43.6
Lj4g0011407 Lotus japonicus HOM05D004508 ORTHO05D005180 1.2e-93 347.8 372 47.0
Sabra01G0090400 Salix brachista HOM05D004508 ORTHO05D005180 3.5e-93 346.3 375 48.5
ECA234G2416 Erigeron canadensis HOM05D004508 ORTHO05D005180 1.2e-90 337.8 374 47.3
Oeu016511.2 Olea europaea HOM05D004508 ORTHO05D005180 1.6e-90 337.4 386 45.9
CBR_g46688 Chara braunii HOM05D004508 ORTHO05D005180 1.4e-89 334.3 428 45.6
Nn2g12338 Nelumbo nucifera HOM05D004508 ORTHO05D005180 8.7e-84 315.1 284 53.9
Psat5g109880 Pisum sativum HOM05D004508 ORTHO05D005180 1.8e-81 307.4 280 52.1
Psat1g081320 Pisum sativum HOM05D004508 ORTHO05D005180 1.3e-79 301.2 280 51.1
C07p28450 Brassica napus HOM05D004508 ORTHO05D005180 1.7e-76 290.8 259 50.2
A03p29560 Brassica napus HOM05D004508 ORTHO05D005180 2.8e-74 283.5 253 51.4
VMungo1215G2974 Vigna mungo HOM05D004508 ORTHO05D005180 4.8e-74 282.7 250 51.2
Glyma.01G212000 Glycine max HOM05D004508 ORTHO05D005180 1.1e-73 281.6 257 51.0
Dinv39078 Davidia involucrata HOM05D004508 ORTHO05D005180 1.8e-73 280.8 348 43.1
BcaC06g34438 Brassica carinata HOM05D004508 ORTHO05D005180 4.0e-73 279.6 248 50.8
BolC7t43385H Brassica oleracea HOM05D004508 ORTHO05D005180 2.6e-72 276.9 244 50.4
MBI04_g30221_MAGBIO Magnolia biondii HOM05D004508 ORTHO05D005180 6.4e-71 272.3 599 30.7
CiPaw.12G105000 Carya illinoinensis HOM05D004508 ORTHO05D005180 6.0e-69 265.8 372 41.7
PSO017G0573 Papaver somniferum HOM05D004508 ORTHO05D005180 1.8e-68 264.2 244 52.5
AUR62017391 Chenopodium quinoa HOM05D004508 ORTHO05D005180 1.1e-67 261.5 230 54.8
Oeu022318.1 Olea europaea HOM05D004508 ORTHO05D005180 5.1e-60 236.1 249 47.8
AagrBONN_evm.TU.Sc2ySwM_344.731 Anthoceros agrestis HOM05D004508 ORTHO05D005180 3.3e-59 233.4 229 53.7
Migut.A00834 Erythranthe guttata HOM05D004508 ORTHO05D005180 5.7e-59 232.6 249 47.4
MELO3C013985.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.1e-58 230.7 190 54.2
Gohir.D03G157900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.2e-55 220.7 245 48.6
Eucgr.D02019 Eucalyptus grandis HOM05D004508 ORTHO05D005180 6.5e-55 219.2 357 37.0
TPR.G214 Trifolium pratense HOM05D004508 ORTHO05D005180 2.6e-48 197.2 156 56.4
Gohir.A03G011900 Gossypium hirsutum HOM05D004508 ORTHO05D005180 2.5e-38 164.1 281 39.5
vmacro17466 Vaccinium macrocarpon HOM05D004508 ORTHO05D005180 1.7e-34 151.4 133 54.1
PRCOL_00002067 Prasinoderma coloniale HOM05D004508 ORTHO05D005180 1.4e-33 148.3 360 31.4
MCO07G558 Micromonas commoda HOM05D004508 ORTHO05D005180 2.6e-32 144.1 396 31.6
MELO3C021762.2 Cucumis melo HOM05D004508 ORTHO05D005180 2.2e-31 141.0 117 55.6
Cre10.g459000 Chlamydomonas reinhardtii HOM05D004508 ORTHO05D005180 1.5e-30 138.3 290 32.8
Lsat_1_v5_gn_3_76480 Lactuca sativa HOM05D004508 ORTHO05D005180 1.8e-25 121.3 210 37.1
Duzib084G0179 Durio zibethinus HOM05D004508 ORTHO05D005180 6.5e-23 112.8 165 40.0
Cfa023844 Carpinus fangiana HOM05D004508 ORTHO05D005180 8.0e-21 105.9 317 29.7
VMungo1215G1224 Vigna mungo HOM05D004508 ORTHO05D005180 8.0e-21 105.9 116 46.6
Nn8g40647 Nelumbo nucifera HOM05D004508 ORTHO05D005180 3.4e-19 100.5 162 37.7
BolC7t43387H Brassica oleracea HOM05D004508 ORTHO05D005180 3.1e-17 94.0 93 48.4
C03p35830 Brassica napus HOM05D004508 ORTHO05D005180 4.5e-16 90.1 93 46.2
CSS0024785 Camellia sinensis var. sinensis HOM05D004508 ORTHO05D005180 1.3e-15 88.6 102 43.1
C07p28470 Brassica napus HOM05D004508 ORTHO05D005180 5.0e-15 86.7 93 45.2
BolC3t15892H Brassica oleracea HOM05D004508 ORTHO05D005180 1.1e-06 58.9 52 46.2
SGA_v2.0_scaffold120G32815 Striga asiatica HOM05D004508 ORTHO05D005180 1.5e-06 58.5 57 47.4


User provided reference genes

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