Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0041 Marchantia polymorpha HOM05D004640 ORTHO05D005489 0.0e+00 1540.0 792 100.0
Pp3c3_37820 Physcomitrium patens HOM05D004640 ORTHO05D005489 2.1e-205 719.9 778 55.4
AagrBONN_evm.TU.Sc2ySwM_344.1404 Anthoceros agrestis HOM05D004640 ORTHO05D005489 9.8e-187 657.9 582 62.2
SMO116G0341 Selaginella moellendorffii HOM05D004640 ORTHO05D005489 9.5e-174 614.8 761 51.9
Os03g0659900 Oryza sativa ssp. japonica HOM05D004640 ORTHO05D005489 2.0e-147 527.3 646 50.9
Aqoxy1G01535 Aquilegia oxysepala HOM05D004640 ORTHO05D005489 1.5e-142 511.1 751 45.5
PGR142G2697 Punica granatum HOM05D004640 ORTHO05D005489 4.0e-140 503.1 644 49.4
Atru.chr6.619 Acer truncatum HOM05D004640 ORTHO05D005489 5.3e-140 502.7 598 50.3
Atru.chr6.621_Atru.chr6.622 Acer truncatum HOM05D004640 ORTHO05D005489 5.3e-140 502.7 598 50.3
Phvul.006G215300 Phaseolus vulgaris HOM05D004640 ORTHO05D005489 2.6e-139 500.4 619 49.1
Duzib132G0532 Durio zibethinus HOM05D004640 ORTHO05D005489 4.5e-139 499.6 770 43.4
Hma1.2p1_0296F.1_g116830 Hydrangea macrophylla HOM05D004640 ORTHO05D005489 1.3e-138 498.0 652 48.5
QL02p099200 Quercus lobata HOM05D004640 ORTHO05D005489 4.9e-138 496.1 583 52.0
Eucgr.I02737 Eucalyptus grandis HOM05D004640 ORTHO05D005489 1.4e-137 494.6 580 51.2
Glyma.08G187100 Glycine max HOM05D004640 ORTHO05D005489 9.3e-137 491.9 610 49.3
Glyma.15G045900 Glycine max HOM05D004640 ORTHO05D005489 1.6e-136 491.1 582 50.3
HPP92_017742 Vanilla planifolia HOM05D004640 ORTHO05D005489 2.1e-136 490.7 644 48.8
CiPaw.05G048700 Carya illinoinensis HOM05D004640 ORTHO05D005489 3.5e-136 490.0 584 50.5
Manes.10G125900 Manihot esculenta HOM05D004640 ORTHO05D005489 4.6e-136 489.6 631 48.3
TWI59G0201 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 7.9e-136 488.8 635 47.9
VMungo0540G1095 Vigna mungo HOM05D004640 ORTHO05D005489 1.1e-134 485.0 619 48.1
Thecc.02G088200 Theobroma cacao HOM05D004640 ORTHO05D005489 1.5e-134 484.6 585 51.1
Lsat_1_v5_gn_5_71601 Lactuca sativa HOM05D004640 ORTHO05D005489 1.9e-134 484.2 610 50.8
Dinv24776 Davidia involucrata HOM05D004640 ORTHO05D005489 3.3e-134 483.4 614 48.9
Sed0025782 Sechium edule HOM05D004640 ORTHO05D005489 3.3e-134 483.4 599 51.1
PSO541G2962 Papaver somniferum HOM05D004640 ORTHO05D005489 1.6e-133 481.1 751 44.2
CsaV3_3G019120 Cucumis sativus L. HOM05D004640 ORTHO05D005489 2.1e-133 480.7 616 49.4
Potri.001G211700 Populus trichocarpa HOM05D004640 ORTHO05D005489 2.1e-133 480.7 686 46.6
Actinidia19942 Actinidia chinensis HOM05D004640 ORTHO05D005489 1.4e-132 478.0 580 51.2
TWI14G1252 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 1.8e-132 477.6 701 45.4
Medtr2g006880 Medicago truncatula HOM05D004640 ORTHO05D005489 4.0e-132 476.5 618 49.0
Gohir.A04G121200 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.3e-132 476.1 764 44.0
Gorai.012G151900 Gossypium raimondii HOM05D004640 ORTHO05D005489 2.0e-131 474.2 785 43.1
TPR.G2079 Trifolium pratense HOM05D004640 ORTHO05D005489 2.6e-131 473.8 618 49.0
Lalb_Chr20g0123511 Lupinus albus HOM05D004640 ORTHO05D005489 3.4e-131 473.4 611 48.9
Gohir.A01G005001 Gossypium hirsutum HOM05D004640 ORTHO05D005489 5.8e-131 472.6 626 47.9
PSO675G0104 Papaver somniferum HOM05D004640 ORTHO05D005489 5.8e-131 472.6 758 43.1
Lj6g0021650 Lotus japonicus HOM05D004640 ORTHO05D005489 9.9e-131 471.9 608 48.4
Gorai.002G006000 Gossypium raimondii HOM05D004640 ORTHO05D005489 4.9e-130 469.5 775 42.3
MBI01_g44452_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.1e-129 468.4 760 43.2
Gohir.D01G005100 Gossypium hirsutum HOM05D004640 ORTHO05D005489 4.2e-129 466.5 626 47.6
AUR62006957 Chenopodium quinoa HOM05D004640 ORTHO05D005489 1.2e-128 464.9 761 42.0
MELO3C019462.2 Cucumis melo HOM05D004640 ORTHO05D005489 2.1e-128 464.2 582 49.8
Ciclev10000505m.g Citrus clementina HOM05D004640 ORTHO05D005489 2.7e-128 463.8 597 47.7
Hund21765 Selenicereus undatus HOM05D004640 ORTHO05D005489 4.6e-128 463.0 758 42.9
Actinidia36578 Actinidia chinensis HOM05D004640 ORTHO05D005489 6.0e-128 462.6 575 50.6
Nn7g37934 Nelumbo nucifera HOM05D004640 ORTHO05D005489 7.9e-128 462.2 541 51.4
ATR0763G087 Amborella trichopoda HOM05D004640 ORTHO05D005489 1.0e-127 461.8 586 50.3
GSVIVG01022882001 Vitis vinifera HOM05D004640 ORTHO05D005489 1.0e-127 461.8 580 51.2
Rhsim05G0203300 Rhododendron simsii HOM05D004640 ORTHO05D005489 5.1e-127 459.5 779 42.7
CSS0031954 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 6.7e-127 459.1 596 48.8
CSS0010715 Camellia sinensis var. sinensis HOM05D004640 ORTHO05D005489 1.5e-126 458.0 695 44.0
EL10Ac4g09724 Beta vulgaris HOM05D004640 ORTHO05D005489 3.3e-126 456.8 776 41.9
Sabra01G0163500 Salix brachista HOM05D004640 ORTHO05D005489 3.3e-126 456.8 762 42.8
Solyc04g026280.2 Solanum lycopersicum HOM05D004640 ORTHO05D005489 4.3e-126 456.4 588 48.6
CBR_g54224 Chara braunii HOM05D004640 ORTHO05D005489 9.6e-126 455.3 786 41.7
Migut.H02548 Erythranthe guttata HOM05D004640 ORTHO05D005489 3.7e-125 453.4 756 42.5
arahy.Tifrunner.gnm1.ann1.Y1PSG0 Arachis hypogaea HOM05D004640 ORTHO05D005489 6.2e-125 452.6 681 44.3
Sc09g0001940 Simmondsia chinensis HOM05D004640 ORTHO05D005489 6.2e-125 452.6 617 47.6
ECA233G0813 Erigeron canadensis HOM05D004640 ORTHO05D005489 1.1e-124 451.8 568 48.6
HanXRQChr15g0469061 Helianthus annuus HOM05D004640 ORTHO05D005489 6.9e-124 449.1 626 47.0
CANSAT11G0894 Cannabis sativa HOM05D004640 ORTHO05D005489 3.4e-123 446.8 769 43.2
MSTRG.23232 Avicennia marina HOM05D004640 ORTHO05D005489 4.5e-123 446.4 583 49.2
COL.COLO4_11782 Corchorus olitorius HOM05D004640 ORTHO05D005489 3.8e-122 443.4 720 43.2
AUR62000605 Chenopodium quinoa HOM05D004640 ORTHO05D005489 6.5e-122 442.6 742 41.2
arahy.Tifrunner.gnm1.ann1.8G9BB5 Arachis hypogaea HOM05D004640 ORTHO05D005489 1.4e-121 441.4 622 46.0
Prupe.1G004500 Prunus persica HOM05D004640 ORTHO05D005489 1.9e-121 441.0 627 46.4
Sopen04g014430 Solanum pennellii HOM05D004640 ORTHO05D005489 1.6e-120 438.0 564 49.3
MD08G1235100 Malus domestica HOM05D004640 ORTHO05D005489 2.7e-120 437.2 699 42.8
FAN08G0534 Fragaria x ananassa HOM05D004640 ORTHO05D005489 4.6e-120 436.4 580 47.2
Carub.0002s0421 Capsella rubella HOM05D004640 ORTHO05D005489 6.0e-120 436.0 628 45.1
Cc09_g07620 Coffea canephora HOM05D004640 ORTHO05D005489 1.8e-119 434.5 635 46.0
FvH4_5g29191 Fragaria vesca HOM05D004640 ORTHO05D005489 1.8e-119 434.5 580 46.6
FAN13G0955 Fragaria x ananassa HOM05D004640 ORTHO05D005489 2.3e-119 434.1 580 47.1
RcHm_v2.0_Chr1g0332251 Rosa chinensis HOM05D004640 ORTHO05D005489 2.3e-119 434.1 645 45.6
Thhalv10023347m.g Eutrema salsugineum HOM05D004640 ORTHO05D005489 3.0e-119 433.7 607 46.6
THA.LOC104809619 Tarenaya hassleriana HOM05D004640 ORTHO05D005489 6.7e-119 432.6 578 46.4
A01p29810 Brassica napus HOM05D004640 ORTHO05D005489 2.8e-117 427.2 682 42.5
BraA01t03109Z Brassica rapa HOM05D004640 ORTHO05D005489 2.8e-117 427.2 682 42.5
Psat1g221200 Pisum sativum HOM05D004640 ORTHO05D005489 3.7e-117 426.8 582 46.9
Lj4C822G11 Lonicera japonica HOM05D004640 ORTHO05D005489 4.8e-117 426.4 521 50.5
Sp2g03520 Schrenkiella parvula HOM05D004640 ORTHO05D005489 4.8e-117 426.4 576 47.4
AL2G15460 Arabidopsis lyrata HOM05D004640 ORTHO05D005489 5.3e-116 422.9 763 39.8
AT1G60995 Arabidopsis thaliana HOM05D004640 ORTHO05D005489 5.3e-116 422.9 572 47.2
C01p37670 Brassica napus HOM05D004640 ORTHO05D005489 6.9e-116 422.5 595 45.7
BolC1t03731H Brassica oleracea HOM05D004640 ORTHO05D005489 6.9e-116 422.5 595 45.7
BcaB04g20302 Brassica carinata HOM05D004640 ORTHO05D005489 1.5e-115 421.4 606 45.7
BcaC06g31828 Brassica carinata HOM05D004640 ORTHO05D005489 2.6e-115 420.6 594 46.1
MD15G1426300 Malus domestica HOM05D004640 ORTHO05D005489 1.0e-114 418.7 753 40.6
BcaC02g10600 Brassica carinata HOM05D004640 ORTHO05D005489 1.3e-114 418.3 607 44.5
C04p25650 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-114 418.3 607 44.5
C05p50900 Brassica napus HOM05D004640 ORTHO05D005489 1.3e-114 418.3 607 44.5
vmacro12737 Vaccinium macrocarpon HOM05D004640 ORTHO05D005489 1.2e-112 411.8 872 38.6
TWI23G1121 Tripterygium wilfordii HOM05D004640 ORTHO05D005489 3.6e-112 410.2 557 46.3
Oeu032223.3 Olea europaea HOM05D000396 ORTHO05D000116 1.5e-110 404.8 361 61.5
Zm00001eb218090 Zea mays HOM05D004640 ORTHO05D005489 5.7e-110 402.9 331 66.5
unitig_0.g396 Utricularia gibba HOM05D004640 ORTHO05D005489 1.1e-108 398.7 578 46.9
Ca_00068_v3 Cicer arietinum L. HOM05D004640 ORTHO05D005489 2.6e-107 394.0 617 42.5
Aa31LG2G9580 Aethionema arabicum HOM05D004640 ORTHO05D005489 1.3e-106 391.7 536 46.3
Nitab4.5_0001785g0050 Nicotiana tabacum HOM05D004640 ORTHO05D005489 2.2e-106 391.0 818 39.5
ClCG05G009610 Citrullus lanatus HOM05D004640 ORTHO05D005489 1.2e-104 385.2 610 43.1
SGA_v2.0_scaffold51G18853 Striga asiatica HOM05D004640 ORTHO05D005489 8.8e-103 379.0 580 44.7
BcaC09g49343 Brassica carinata HOM05D004640 ORTHO05D005489 1.7e-101 374.8 415 53.0
BolC4t24244H Brassica oleracea HOM05D004640 ORTHO05D005489 5.9e-99 366.3 516 44.4
FAN04G1948 Fragaria x ananassa HOM05D004640 ORTHO05D005489 3.6e-96 357.1 580 41.0
Gohir.D04G163900 Gossypium hirsutum HOM05D004640 ORTHO05D005489 8.2e-93 345.9 461 50.3
Duzib052G0332 Durio zibethinus HOM05D004640 ORTHO05D005489 2.2e-90 337.8 782 36.8
DCAR_021303 Daucus carota HOM05D004640 ORTHO05D005489 9.7e-86 322.4 624 39.6
Oeu046366.1 Olea europaea HOM05D004640 ORTHO05D005489 1.3e-85 322.0 627 39.6
Peaxi162Scf00577g00411 Petunia axillaris HOM05D004640 ORTHO05D005489 2.4e-84 317.8 452 44.9
FAN18G0226 Fragaria x ananassa HOM05D004640 ORTHO05D005489 5.9e-83 313.2 585 38.5
Ah.06g188240 Amaranthus hybridus HOM05D004640 ORTHO05D005489 2.7e-75 287.7 532 40.0
TAR381G0517 Trochodendron aralioides HOM05D004640 ORTHO05D005489 4.4e-70 270.4 796 33.5
BraSC39t46176Z Brassica rapa HOM05D004640 ORTHO05D005489 1.6e-64 251.9 188 74.5
TAR625G1136 Trochodendron aralioides HOM05D004640 ORTHO05D005489 1.5e-62 245.4 180 75.0
CAN.G124.21 Capsicum annuum HOM05D004640 ORTHO05D005489 3.4e-62 244.2 228 64.0
CDE12G0675 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 9.8e-62 242.7 286 50.7
Hund07189 Selenicereus undatus HOM05D004640 ORTHO05D005489 2.0e-59 235.0 457 37.6
Nitab4.5_0004809g0070 Nicotiana tabacum HOM05D004640 ORTHO05D005489 3.0e-58 231.1 329 45.6
Manes.07G017650 Manihot esculenta HOM05D004640 ORTHO05D005489 4.1e-52 210.7 165 72.7
CDE12G0207 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.6e-48 197.6 362 37.0
Haze_01729 Corylus avellana HOM05D004640 ORTHO05D005489 2.4e-44 184.9 160 67.5
CDE12G0722 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 6.0e-43 180.3 177 61.6
CDE12G0158 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 1.0e-42 179.5 186 60.2
CDE12G0153 Ceratophyllum demersum HOM05D004640 ORTHO05D005489 3.3e-41 174.5 325 36.0
RcHm_v2.0_Chr7g0230911 Rosa chinensis HOM05D004640 ORTHO05D005489 2.2e-37 161.8 103 83.5
BNapus_Darmor_BZH_scaffold_271p00020 Brassica napus HOM05D004640 ORTHO05D005489 9.0e-31 139.8 157 56.1
PRCOL_00005332 Prasinoderma coloniale HOM05D004640 ORTHO05D005489 4.6e-27 127.5 308 31.8
MBI01_g00654_MAGBIO Magnolia biondii HOM05D004640 ORTHO05D005489 1.0e-26 126.3 264 37.1
Haze_01727 Corylus avellana HOM05D004640 ORTHO05D005489 6.9e-23 113.6 83 61.4
arahy.Tifrunner.gnm1.ann1.2GJ950 Arachis hypogaea HOM05D004640 ORTHO05D005489 4.9e-21 107.5 89 67.4
Gohir.D04G163933 Gossypium hirsutum HOM05D004640 ORTHO05D005489 6.0e-19 100.5 166 41.0
HPP92_017709 Vanilla planifolia HOM05D004640 ORTHO05D005489 6.0e-19 100.5 255 31.8
BNapus_Darmor_BZH_scaffold_271p00030 Brassica napus HOM05D004640 ORTHO05D005489 5.1e-18 97.4 350 27.4
EL10Ac4g09779 Beta vulgaris HOM05D004640 ORTHO05D005489 8.7e-18 96.7 90 63.3
Haze_01804 Corylus avellana HOM05D004640 ORTHO05D005489 1.7e-13 82.4 58 62.1
EL10Ac4g09783 Beta vulgaris HOM05D004640 ORTHO05D005489 1.9e-12 79.0 277 31.8
SEGI_36483 Sequoiadendron giganteum HOM05D004640 ORTHO05D005489 3.2e-12 78.2 58 70.7
Haze_01724 Corylus avellana HOM05D004640 ORTHO05D005489 2.3e-10 72.0 193 31.1
Zm00001eb114350 Zea mays HOM05D004640 ORTHO05D005489 2.0e-06 58.9 53 56.6
RcHm_v2.0_Chr6g0266101 Rosa chinensis HOM05D004640 ORTHO05D005489 1.0e-05 56.6 32 84.4


User provided reference genes

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