Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0008 Marchantia polymorpha HOM05D010122 ORTHO05D013334 8.1e-130 467.2 263 100.0
Mapoly0014s0014 Marchantia polymorpha HOM05D010122 ORTHO05D013334 8.1e-130 467.2 263 100.0
Mapoly0026s0123 Marchantia polymorpha HOM05D010122 ORTHO05D013334 2.0e-19 100.5 72 62.5
Mapoly0180s0015 Marchantia polymorpha HOM05D010122 ORTHO05D013334 2.6e-19 100.1 99 50.5
Mapoly0180s0017 Marchantia polymorpha HOM05D010122 ORTHO05D013334 2.6e-19 100.1 99 50.5
Mapoly0983s0001 Marchantia polymorpha HOM05D010122 ORTHO05D017075 2.9e-18 96.7 73 58.9
Mapoly0180s0012 Marchantia polymorpha HOM05D010122 ORTHO05D013334 8.4e-18 95.1 106 46.2
Mapoly0180s0014 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.1e-17 94.7 106 46.2
Mapoly0180s0021 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.1e-17 94.7 106 46.2
Mapoly0026s0122 Marchantia polymorpha HOM05D010122 ORTHO05D013334 4.2e-17 92.8 99 45.5
Mapoly0180s0018 Marchantia polymorpha HOM05D010122 ORTHO05D013334 4.2e-17 92.8 70 60.0
Mapoly0180s0019 Marchantia polymorpha HOM05D010122 ORTHO05D013334 2.7e-16 90.1 70 57.1
Mapoly0028s0146 Marchantia polymorpha HOM05D010122 ORTHO05D013334 3.4e-11 73.2 65 50.8
Pp3c6_12850 Physcomitrium patens HOM05D015359 ORTHO05D050340 2.9e-10 70.1 96 39.6
Mapoly0025s0091 Marchantia polymorpha HOM05D010122 ORTHO05D013334 1.1e-09 68.2 122 32.0
Pp3c5_14790 Physcomitrium patens HOM05D014505 ORTHO05D050340 7.1e-09 65.5 74 40.5
Mapoly0007s0187 Marchantia polymorpha HOM05D019884 ORTHO05D000300 2.1e-08 63.9 65 43.1
Mapoly0025s0037 Marchantia polymorpha HOM05D025773 ORTHO05D000300 4.6e-08 62.8 63 44.4
Pp3c20_18320 Physcomitrium patens HOM05D011764 ORTHO05D308574 1.8e-07 60.8 64 42.2
MSTRG.9104 Avicennia marina HOM05D000262 ORTHO05D000399 6.7e-07 58.9 71 43.7
CAN.G11.13 Capsicum annuum HOM05D000262 ORTHO05D000300 6.7e-07 58.9 66 42.4
Mapoly0023s0034 Marchantia polymorpha HOM05D000262 ORTHO05D000399 6.7e-07 58.9 74 35.1
Pp3c24_5200 Physcomitrium patens HOM05D011764 ORTHO05D318183 6.7e-07 58.9 64 40.6
Lsat_1_v5_gn_2_81320 Lactuca sativa HOM05D000262 ORTHO05D000300 8.7e-07 58.5 63 41.3
Manes.01G115000 Manihot esculenta HOM05D000262 ORTHO05D000300 8.7e-07 58.5 63 42.9
Solyc04g054500.3 Solanum lycopersicum HOM05D000262 ORTHO05D000300 8.7e-07 58.5 76 36.8
Sopen04g024320 Solanum pennellii HOM05D000262 ORTHO05D000300 8.7e-07 58.5 76 36.8
Aqoxy6G00547 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 1.5e-06 57.8 63 42.9
CAN.G3888.1 Capsicum annuum HOM05D000262 ORTHO05D000300 1.5e-06 57.8 63 42.9
Glyma.18G019300 Glycine max HOM05D000262 ORTHO05D000300 1.5e-06 57.8 63 44.4
Sp7g36190 Schrenkiella parvula HOM05D000262 ORTHO05D000300 1.5e-06 57.8 63 44.4
MSTRG.23611 Avicennia marina HOM05D000262 ORTHO05D000300 1.9e-06 57.4 63 42.9
Dinv19003 Davidia involucrata HOM05D007651 ORTHO05D000898 1.9e-06 57.4 112 32.1
Glyma.11G238000 Glycine max HOM05D000262 ORTHO05D000300 1.9e-06 57.4 63 44.4
Mapoly0064s0017 Marchantia polymorpha HOM05D010122 ORTHO05D254360 1.9e-06 57.4 71 39.4
BcaNung00892 Brassica carinata HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
BcaNung05546 Brassica carinata HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
A01p00590 Brassica napus HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
C01p00720 Brassica napus HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
BolC1t00075H Brassica oleracea HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
BraA01t00067Z Brassica rapa HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
Carub.0007s0158 Capsella rubella HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
Lj4g0003851 Lotus japonicus HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
PGSC0003DMG400016689 Solanum tuberosum HOM05D000262 ORTHO05D000300 2.5e-06 57.0 89 32.6
TPR.G2225 Trifolium pratense HOM05D000262 ORTHO05D000300 2.5e-06 57.0 63 44.4
TWI15G0264 Tripterygium wilfordii HOM05D000262 ORTHO05D000399 2.5e-06 57.0 69 37.7
AL7G11900 Arabidopsis lyrata HOM05D000262 ORTHO05D000300 3.3e-06 56.6 63 42.9
AT4G39700 Arabidopsis thaliana HOM05D000262 ORTHO05D000300 3.3e-06 56.6 63 42.9
CDE10G0478 Ceratophyllum demersum HOM05D000262 ORTHO05D000300 3.3e-06 56.6 63 39.7
Ca_17711_v3 Cicer arietinum L. HOM05D000262 ORTHO05D000300 3.3e-06 56.6 63 42.9
Ciclev10013659m.g Citrus clementina HOM05D000262 ORTHO05D000300 3.3e-06 56.6 63 41.3
Thhalv10026454m.g Eutrema salsugineum HOM05D000262 ORTHO05D000300 3.3e-06 56.6 63 42.9
HanXRQChr17g0543461 Helianthus annuus HOM05D000262 ORTHO05D000300 3.3e-06 56.6 63 39.7
Lalb_Chr11g0075231 Lupinus albus HOM05D000262 ORTHO05D000300 3.3e-06 56.6 64 43.8
Mapoly0123s0004 Marchantia polymorpha HOM05D010122 ORTHO05D000300 3.3e-06 56.6 62 41.9
CiPaw.04G045500 Carya illinoinensis HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 41.3
FAN19G2706 Fragaria x ananassa HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 44.4
FAN23G0489 Fragaria x ananassa HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 44.4
FAN26G0693 Fragaria x ananassa HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 44.4
FAN28G1131 Fragaria x ananassa HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 44.4
Lj4A179T27 Lonicera japonica HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 41.3
Lalb_Chr12g0203661 Lupinus albus HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 42.9
PSO133G0001 Papaver somniferum HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 44.4
Prupe.3G152300 Prunus persica HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 39.7
RcHm_v2.0_Chr2g0115511 Rosa chinensis HOM05D000262 ORTHO05D000300 4.3e-06 56.2 63 44.4
TWI63G0102 Tripterygium wilfordii HOM05D000262 ORTHO05D000399 4.3e-06 56.2 69 37.7
Aqoxy5G04123 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 39.7
Gohir.A07G076500 Gossypium hirsutum HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 39.7
Gorai.001G086100 Gossypium raimondii HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 39.7
Lalb_Chr02g0145391 Lupinus albus HOM05D000262 ORTHO05D000300 5.6e-06 55.8 73 37.0
Manes.02G074200 Manihot esculenta HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 39.7
Oeu030808.1 Olea europaea HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 39.7
Os08g0205400 Oryza sativa ssp. japonica HOM05D000999 ORTHO05D000399 5.6e-06 55.8 69 39.1
PSO541G0862 Papaver somniferum HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 44.4
Pp3c19_4310 Physcomitrium patens HOM05D000262 ORTHO05D000300 5.6e-06 55.8 65 36.9
Pp3c19_4313 Physcomitrium patens HOM05D000262 ORTHO05D000300 5.6e-06 55.8 65 36.9
Psat7g053160 Pisum sativum HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 42.9
Potri.010G114600 Populus trichocarpa HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 38.1
QL02p048387 Quercus lobata HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 39.7
Solyc03g043640.3 Solanum lycopersicum HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 38.1
Sopen03g007490 Solanum pennellii HOM05D000262 ORTHO05D000300 5.6e-06 55.8 63 38.1
Aqoxy6G00546 Aquilegia oxysepala HOM05D000262 ORTHO05D000300 7.4e-06 55.5 63 41.3
Haze_06236 Corylus avellana HOM05D000262 ORTHO05D000300 7.4e-06 55.5 77 41.6
Migut.L00472 Erythranthe guttata HOM05D000262 ORTHO05D000300 7.4e-06 55.5 73 35.6
HanXRQChr12g0375901 Helianthus annuus HOM05D000262 ORTHO05D000300 7.4e-06 55.5 63 39.7
Pp3c22_7540 Physcomitrium patens HOM05D010122 ORTHO05D000300 7.4e-06 55.5 65 35.4
Sed0012990 Sechium edule HOM05D000262 ORTHO05D000300 7.4e-06 55.5 63 38.1
Hund06774 Selenicereus undatus HOM05D000999 ORTHO05D000399 7.4e-06 55.5 71 39.4
Hund16201 Selenicereus undatus HOM05D000262 ORTHO05D000300 7.4e-06 55.5 64 43.8
Zm00001eb032340 Zea mays HOM05D000999 ORTHO05D000399 7.4e-06 55.5 68 39.7
Aa31LG6G15560 Aethionema arabicum HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 41.3
CARHR247020 Cardamine hirsuta HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 41.3
COL.COLO4_08827 Corchorus olitorius HOM05D000262 ORTHO05D000399 9.6e-06 55.1 69 36.2
Haze_14214 Corylus avellana HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 39.7
ECA246G1406 Erigeron canadensis HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 39.7
Eucgr.B02894 Eucalyptus grandis HOM05D000262 ORTHO05D000300 9.6e-06 55.1 76 32.9
Lsat_1_v5_gn_3_83180 Lactuca sativa HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 38.1
Lalb_Chr06g0165571 Lupinus albus HOM05D000262 ORTHO05D000300 9.6e-06 55.1 73 37.0
Lalb_Chr07g0184961 Lupinus albus HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 42.9
Manes.07G089100 Manihot esculenta HOM05D000262 ORTHO05D000399 9.6e-06 55.1 67 40.3
Mapoly0025s0034 Marchantia polymorpha HOM05D019884 ORTHO05D000399 9.6e-06 55.1 70 37.1
Nn3g18191 Nelumbo nucifera HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 41.3
Nn4g24103 Nelumbo nucifera HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 39.7
Nitab4.5_0000214g0130 Nicotiana tabacum HOM05D000262 ORTHO05D000300 9.6e-06 55.1 73 38.4
Nitab4.5_0000518g0070 Nicotiana tabacum HOM05D000262 ORTHO05D000300 9.6e-06 55.1 73 38.4
Pp3c14_1600 Physcomitrium patens HOM05D010122 ORTHO05D319297 9.6e-06 55.1 78 34.6
Pp3c19_4360 Physcomitrium patens HOM05D020085 ORTHO05D000300 9.6e-06 55.1 66 40.9
Solyc04g007630.2 Solanum lycopersicum HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 41.3
Sopen04g002710 Solanum pennellii HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 41.3
PGSC0003DMG400005988 Solanum tuberosum HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 41.3
Thecc.04G123000 Theobroma cacao HOM05D000262 ORTHO05D000300 9.6e-06 55.1 63 39.7


User provided reference genes

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