Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0014s0003 Marchantia polymorpha HOM05D003886 ORTHO05D004587 1.2e-297 1025.8 515 100.0
AagrBONN_evm.TU.Sc2ySwM_228.1694 Anthoceros agrestis HOM05D003886 ORTHO05D004587 8.4e-163 577.8 459 66.2
SMO367G1242 Selaginella moellendorffii HOM05D003886 ORTHO05D004587 1.9e-146 523.5 471 58.4
Pp3c23_7050 Physcomitrium patens HOM05D003886 ORTHO05D004587 3.5e-129 466.1 505 52.7
HPP92_015734 Vanilla planifolia HOM05D003886 ORTHO05D004587 2.3e-128 463.4 469 54.6
Nn7g35782 Nelumbo nucifera HOM05D003886 ORTHO05D004587 5.7e-127 458.8 470 54.3
QL05p085089 Quercus lobata HOM05D003886 ORTHO05D004587 1.3e-126 457.6 474 53.4
Sed0016198 Sechium edule HOM05D003886 ORTHO05D004587 2.2e-126 456.8 457 53.4
CiPaw.01G092000 Carya illinoinensis HOM05D003886 ORTHO05D004587 3.7e-126 456.1 470 53.4
Dinv24535 Davidia involucrata HOM05D003886 ORTHO05D004587 4.8e-126 455.7 467 54.0
TAR624G0406 Trochodendron aralioides HOM05D003886 ORTHO05D004587 1.4e-125 454.1 460 54.1
Cfa002157 Carpinus fangiana HOM05D003886 ORTHO05D004587 4.1e-125 452.6 471 53.9
Dinv30973 Davidia involucrata HOM05D003886 ORTHO05D004587 9.0e-125 451.4 457 54.3
MELO3C015232.2 Cucumis melo HOM05D003886 ORTHO05D004587 1.5e-124 450.7 466 53.6
CsaV3_1G038140 Cucumis sativus L. HOM05D003886 ORTHO05D004587 2.0e-124 450.3 466 53.9
GSVIVG01000280001 Vitis vinifera HOM05D003886 ORTHO05D004587 3.4e-124 449.5 492 51.2
CSS0008969 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.3e-123 447.6 467 52.7
Lj2g0000910 Lotus japonicus HOM05D003886 ORTHO05D004587 1.3e-123 447.6 471 53.5
Glyma.19G049500 Glycine max HOM05D003886 ORTHO05D004587 2.2e-123 446.8 477 51.8
VMungo0464G1314 Vigna mungo HOM05D003886 ORTHO05D004587 2.9e-123 446.4 471 52.9
CANSAT01G1565 Cannabis sativa HOM05D003886 ORTHO05D004587 3.8e-123 446.0 483 52.4
TAR626G1553 Trochodendron aralioides HOM05D003886 ORTHO05D004587 5.0e-123 445.7 472 53.6
Prupe.3G028400 Prunus persica HOM05D003886 ORTHO05D004587 6.5e-123 445.3 485 52.4
Actinidia17720 Actinidia chinensis HOM05D003886 ORTHO05D004587 8.5e-123 444.9 483 50.7
Phvul.004G065600 Phaseolus vulgaris HOM05D003886 ORTHO05D004587 1.4e-122 444.1 475 53.3
MD09G1170200 Malus domestica HOM05D003886 ORTHO05D004587 1.9e-122 443.7 468 53.4
TWI75G0340 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 2.5e-122 443.4 465 52.5
Atru.chr3.1841 Acer truncatum HOM05D003886 ORTHO05D004587 3.2e-122 443.0 494 50.0
Lalb_Chr21g0317801 Lupinus albus HOM05D003886 ORTHO05D004587 4.2e-122 442.6 472 52.8
Zm00001eb308950 Zea mays HOM05D003886 ORTHO05D004587 4.2e-122 442.6 472 52.8
Manes.03G095300 Manihot esculenta HOM05D003886 ORTHO05D004587 5.5e-122 442.2 495 51.9
Lalb_Chr04g0257491 Lupinus albus HOM05D003886 ORTHO05D004587 9.4e-122 441.4 464 52.2
Glyma.13G045600 Glycine max HOM05D003886 ORTHO05D004587 1.2e-121 441.0 472 52.3
Thecc.06G049000 Theobroma cacao HOM05D003886 ORTHO05D004587 1.2e-121 441.0 474 53.2
MD17G1156900 Malus domestica HOM05D003886 ORTHO05D004587 2.7e-121 439.9 476 52.5
Ca_17750_v3 Cicer arietinum L. HOM05D003886 ORTHO05D004587 4.6e-121 439.1 477 52.2
Gorai.011G001300 Gossypium raimondii HOM05D003886 ORTHO05D004587 6.1e-121 438.7 477 51.8
Rhsim11G0111800 Rhododendron simsii HOM05D003886 ORTHO05D004587 1.0e-120 438.0 487 50.9
CSS0041623 Camellia sinensis var. sinensis HOM05D003886 ORTHO05D004587 1.4e-120 437.6 468 52.1
TWI12G0365 Tripterygium wilfordii HOM05D003886 ORTHO05D004587 1.4e-120 437.6 472 50.8
Gohir.D10G001000 Gossypium hirsutum HOM05D003886 ORTHO05D004587 1.8e-120 437.2 477 51.6
PSO063G1610 Papaver somniferum HOM05D003886 ORTHO05D004587 3.0e-120 436.4 459 54.7
Manes.15G112100 Manihot esculenta HOM05D003886 ORTHO05D004587 5.1e-120 435.6 471 52.7
arahy.Tifrunner.gnm1.ann1.Z0Z3SY Arachis hypogaea HOM05D003886 ORTHO05D004587 6.7e-120 435.3 489 52.1
Gohir.A10G000800 Gossypium hirsutum HOM05D003886 ORTHO05D004587 8.8e-120 434.9 479 52.0
AUR62011474 Chenopodium quinoa HOM05D003886 ORTHO05D004587 1.1e-119 434.5 463 54.0
MSTRG.27896 Avicennia marina HOM05D003886 ORTHO05D004587 1.5e-119 434.1 470 51.5
PSO782G4625 Papaver somniferum HOM05D003886 ORTHO05D004587 1.5e-119 434.1 459 54.5
PGR102G2920 Punica granatum HOM05D003886 ORTHO05D004587 1.5e-119 434.1 501 49.9
AUR62016582 Chenopodium quinoa HOM05D003886 ORTHO05D004587 2.5e-119 433.3 456 54.2
RcHm_v2.0_Chr2g0148321 Rosa chinensis HOM05D003886 ORTHO05D004587 4.3e-119 432.6 481 51.4
FAN05G1128 Fragaria x ananassa HOM05D003886 ORTHO05D004587 7.4e-119 431.8 480 51.7
FvH4_6g36310 Fragaria vesca HOM05D003886 ORTHO05D004587 1.3e-118 431.0 480 51.9
FAN09G1502 Fragaria x ananassa HOM05D003886 ORTHO05D004587 1.3e-118 431.0 480 51.7
Duzib235G0758 Durio zibethinus HOM05D003886 ORTHO05D004587 2.2e-118 430.3 477 52.6
FAN14G1097 Fragaria x ananassa HOM05D003886 ORTHO05D004587 2.8e-118 429.9 480 51.9
EL10Ac9g21865 Beta vulgaris HOM05D003886 ORTHO05D004587 6.3e-118 428.7 461 52.3
Eucgr.F04066 Eucalyptus grandis HOM05D003886 ORTHO05D004587 1.1e-117 427.9 478 52.1
Oeu000173.4 Olea europaea HOM05D003886 ORTHO05D004587 1.1e-117 427.9 524 46.8
Lalb_Chr06g0174541 Lupinus albus HOM05D003886 ORTHO05D004587 3.1e-117 426.4 464 52.2
THA.LOC104808112 Tarenaya hassleriana HOM05D003886 ORTHO05D004587 3.1e-117 426.4 463 53.1
Ciclev10020009m.g Citrus clementina HOM05D003886 ORTHO05D004587 4.1e-117 426.0 494 49.4
Os08g0338900 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 4.1e-117 426.0 464 50.9
ATR0626G209 Amborella trichopoda HOM05D003886 ORTHO05D004587 6.9e-117 425.2 470 51.3
FAN14G2559 Fragaria x ananassa HOM05D003886 ORTHO05D004587 6.9e-117 425.2 480 51.5
Sabra14G0003200 Salix brachista HOM05D003886 ORTHO05D004587 6.9e-117 425.2 501 50.7
Sc24g0001760 Simmondsia chinensis HOM05D003886 ORTHO05D004587 3.4e-116 422.9 455 52.5
Migut.N00997 Erythranthe guttata HOM05D003886 ORTHO05D004587 5.9e-116 422.2 474 50.4
Potri.014G000600 Populus trichocarpa HOM05D003886 ORTHO05D004587 1.0e-115 421.4 511 49.3
Actinidia11710 Actinidia chinensis HOM05D003886 ORTHO05D004587 1.3e-115 421.0 447 52.1
Ah.01g020350 Amaranthus hybridus HOM05D003886 ORTHO05D004587 3.8e-115 419.5 474 51.5
Medtr8g090035 Medicago truncatula HOM05D003886 ORTHO05D004587 2.5e-114 416.8 473 51.4
Peaxi162Scf00048g01418 Petunia axillaris HOM05D003886 ORTHO05D004587 3.2e-114 416.4 471 50.1
Cc02_g36820 Coffea canephora HOM05D003886 ORTHO05D004587 5.5e-114 415.6 490 49.8
vmacro01641 Vaccinium macrocarpon HOM05D003886 ORTHO05D004587 1.2e-113 414.5 522 46.9
MSTRG.5179 Avicennia marina HOM05D003886 ORTHO05D004587 1.6e-113 414.1 454 50.7
Nitab4.5_0013482g0010 Nicotiana tabacum HOM05D003886 ORTHO05D004587 3.6e-113 412.9 473 50.1
HanXRQChr17g0570801 Helianthus annuus HOM05D003886 ORTHO05D004587 4.7e-113 412.5 470 48.9
Nitab4.5_0006794g0050 Nicotiana tabacum HOM05D003886 ORTHO05D004587 6.1e-113 412.1 470 48.9
Peaxi162Scf00198g01528 Petunia axillaris HOM05D003886 ORTHO05D004587 7.9e-113 411.8 475 49.3
Aa31LG4G1970 Aethionema arabicum HOM05D003886 ORTHO05D004587 1.8e-112 410.6 464 51.1
CDE02G1355 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 3.9e-112 409.5 447 50.8
Solyc02g032300.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 5.1e-112 409.1 469 49.0
HanXRQChr17g0545561 Helianthus annuus HOM05D003886 ORTHO05D004587 8.8e-112 408.3 455 51.0
Sopen02g010650 Solanum pennellii HOM05D003886 ORTHO05D004587 8.8e-112 408.3 469 49.0
CAN.G809.69 Capsicum annuum HOM05D003886 ORTHO05D004587 2.0e-111 407.1 470 50.2
Sopen02g026260 Solanum pennellii HOM05D003886 ORTHO05D004587 2.0e-111 407.1 470 49.1
Carub.0001s1642 Capsella rubella HOM05D003886 ORTHO05D004587 2.6e-111 406.8 460 50.0
Carub.0002s2589 Capsella rubella HOM05D003886 ORTHO05D004587 5.7e-111 405.6 460 50.2
Psat7g057280 Pisum sativum HOM05D003886 ORTHO05D004587 7.4e-111 405.2 472 50.8
Solyc02g081650.3 Solanum lycopersicum HOM05D003886 ORTHO05D004587 7.4e-111 405.2 470 49.1
Sp5g34070 Schrenkiella parvula HOM05D003886 ORTHO05D004587 3.7e-110 402.9 462 50.6
AT1G79020 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 4.8e-110 402.5 460 50.2
COL.COLO4_26802 Corchorus olitorius HOM05D003886 ORTHO05D004587 4.8e-110 402.5 477 49.9
PGSC0003DMG400017734 Solanum tuberosum HOM05D003886 ORTHO05D004587 1.1e-109 401.4 470 49.4
ECA234G0089 Erigeron canadensis HOM05D003886 ORTHO05D004587 1.4e-109 401.0 464 48.7
MBI14_g11787_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.4e-109 401.0 441 50.3
AL2G39480 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 4.1e-109 399.4 462 50.2
CDE03G0037 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 5.3e-109 399.1 465 48.6
BolC6t40307H Brassica oleracea HOM05D003886 ORTHO05D004587 9.1e-109 398.3 458 50.0
Aqoxy6G00358 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.5e-108 397.5 460 47.6
A02p22460 Brassica napus HOM05D003886 ORTHO05D004587 1.5e-108 397.5 459 49.7
BcaC08g47466 Brassica carinata HOM05D003886 ORTHO05D004587 2.0e-108 397.1 458 49.8
A07p44160 Brassica napus HOM05D003886 ORTHO05D004587 2.0e-108 397.1 464 49.4
BcaB02g07192 Brassica carinata HOM05D003886 ORTHO05D004587 2.6e-108 396.7 458 50.7
BraA07t31924Z Brassica rapa HOM05D003886 ORTHO05D004587 3.5e-108 396.4 459 50.1
C06p52890 Brassica napus HOM05D003886 ORTHO05D004587 4.5e-108 396.0 456 49.3
Duzib192G0492 Durio zibethinus HOM05D003886 ORTHO05D004587 5.9e-108 395.6 480 49.2
DCAR_022329 Daucus carota HOM05D003886 ORTHO05D004587 1.0e-107 394.8 480 47.7
C06p30220 Brassica napus HOM05D003886 ORTHO05D004587 3.8e-107 392.9 463 49.5
BolC6t38185H Brassica oleracea HOM05D003886 ORTHO05D004587 3.8e-107 392.9 463 49.5
BcaC08g45391 Brassica carinata HOM05D003886 ORTHO05D004587 5.0e-107 392.5 463 49.2
C02p36140 Brassica napus HOM05D003886 ORTHO05D004587 5.0e-107 392.5 463 49.5
A07p27360 Brassica napus HOM05D003886 ORTHO05D004587 6.5e-107 392.1 465 49.5
Thhalv10007658m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 6.5e-107 392.1 464 48.1
Oeu010600.1 Olea europaea HOM05D003886 ORTHO05D004587 6.5e-107 392.1 464 48.1
BraA02t07251Z Brassica rapa HOM05D003886 ORTHO05D004587 1.9e-106 390.6 459 49.9
Thhalv10018536m.g Eutrema salsugineum HOM05D003886 ORTHO05D004587 3.2e-106 389.8 476 49.6
BcaC03g15859 Brassica carinata HOM05D003886 ORTHO05D004587 4.2e-106 389.4 463 48.8
CARHR017150 Cardamine hirsuta HOM05D003886 ORTHO05D004587 4.2e-106 389.4 468 47.9
TPR.G6290 Trifolium pratense HOM05D003886 ORTHO05D004587 4.2e-106 389.4 438 52.5
BraA07t30377Z Brassica rapa HOM05D003886 ORTHO05D004587 5.5e-106 389.0 470 49.1
AL1G28850 Arabidopsis lyrata HOM05D003886 ORTHO05D004587 7.2e-106 388.7 461 48.4
Oeu061917.1 Olea europaea HOM05D003886 ORTHO05D004587 4.7e-105 386.0 527 44.2
AT1G16690 Arabidopsis thaliana HOM05D003886 ORTHO05D004587 3.0e-104 383.3 470 47.0
CBR_g38268 Chara braunii HOM05D003886 ORTHO05D004587 5.2e-104 382.5 621 42.5
unitig_699.g19834 Utricularia gibba HOM05D003886 ORTHO05D004587 6.3e-102 375.6 457 47.7
Lsat_1_v5_gn_3_52161 Lactuca sativa HOM05D003886 ORTHO05D004587 1.3e-99 367.9 431 49.0
arahy.Tifrunner.gnm1.ann1.78GTJP Arachis hypogaea HOM05D003886 ORTHO05D004587 1.1e-98 364.8 288 64.2
SHI31130 Sapria himalayana HOM05D003886 ORTHO05D004587 1.2e-97 361.3 477 46.8
Sp1g14830 Schrenkiella parvula HOM05D003886 ORTHO05D004587 1.6e-97 360.9 465 46.9
CDE05G0598 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 6.1e-97 359.0 455 45.1
Pp3c16_8390 Physcomitrium patens HOM05D003886 ORTHO05D004587 1.8e-96 357.5 499 45.5
Lj5C312G11 Lonicera japonica HOM05D003886 ORTHO05D004587 3.4e-95 353.2 436 47.9
CDE06G2124 Ceratophyllum demersum HOM05D003886 ORTHO05D004587 1.6e-92 344.4 409 47.7
ECA246G0124 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.3e-86 322.4 422 47.2
SGA_v2.0_scaffold8G04472 Striga asiatica HOM05D003886 ORTHO05D004587 3.3e-82 310.1 531 40.9
Nitab4.5_0000389g0130 Nicotiana tabacum HOM05D003886 ORTHO05D004587 2.2e-78 297.4 254 57.9
ATR0751G140 Amborella trichopoda HOM05D003886 ORTHO05D004587 7.3e-74 282.3 348 48.3
Ciclev10021199m.g Citrus clementina HOM05D003886 ORTHO05D004587 1.2e-73 281.6 360 47.2
BolC2t09627H Brassica oleracea HOM05D003886 ORTHO05D004587 7.5e-71 272.3 349 47.3
ECA228G0002 Erigeron canadensis HOM05D003886 ORTHO05D004587 6.8e-64 249.2 261 51.3
Os09g0284600 Oryza sativa ssp. japonica HOM05D003886 ORTHO05D004587 2.3e-56 224.2 216 53.7
Cpa.g.sc10.20 Carica papaya HOM05D003886 ORTHO05D004587 6.4e-54 216.1 196 54.6
MCO08G116 Micromonas commoda HOM05D003886 ORTHO05D004587 1.2e-52 211.8 535 32.7
PRCOL_00004606 Prasinoderma coloniale HOM05D003886 ORTHO05D004587 5.1e-51 206.5 502 33.1
CARHR072690 Cardamine hirsuta HOM05D003886 ORTHO05D004587 1.6e-49 201.4 193 52.8
SEGI_16863 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 6.2e-49 199.5 170 56.5
Ah.14g084510 Amaranthus hybridus HOM05D003886 ORTHO05D004587 8.1e-49 199.1 540 31.5
PGSC0003DMG400013092 Solanum tuberosum HOM05D003886 ORTHO05D004587 8.9e-48 195.7 192 50.0
Cre03.g196400 Chlamydomonas reinhardtii HOM05D003886 ORTHO05D004587 5.8e-47 193.0 500 32.2
HanXRQChr08g0234351 Helianthus annuus HOM05D003886 ORTHO05D004587 9.3e-45 185.7 159 59.7
SEGI_11104 Sequoiadendron giganteum HOM05D003886 ORTHO05D004587 7.8e-44 182.6 316 40.2
ClCG03G018020 Citrullus lanatus HOM05D003886 ORTHO05D004587 1.7e-43 181.4 296 43.6
Nn8g38501 Nelumbo nucifera HOM05D003886 ORTHO05D004587 1.5e-42 178.3 143 62.2
ClCG03G018040 Citrullus lanatus HOM05D003886 ORTHO05D004587 4.4e-39 166.8 129 64.3
CAN.G1586.1 Capsicum annuum HOM05D003886 ORTHO05D004587 7.6e-39 166.0 260 41.2
Zm00001eb097400 Zea mays HOM05D003886 ORTHO05D004587 1.3e-35 155.2 255 42.7
ATR0751G177 Amborella trichopoda HOM05D003886 ORTHO05D004587 2.3e-35 154.5 131 59.5
BcaB05g25167 Brassica carinata HOM05D003886 ORTHO05D004587 1.5e-34 151.8 120 60.8
Aqoxy6G02601 Aquilegia oxysepala HOM05D003886 ORTHO05D004587 1.8e-27 128.3 153 46.4
Cpa.g.sc10.19 Carica papaya HOM05D003886 ORTHO05D004587 4.0e-24 117.1 202 39.1
Haze_16250 Corylus avellana HOM05D003886 ORTHO05D004587 7.6e-23 112.8 74 70.3
GSVIVG01024509001 Vitis vinifera HOM05D003886 ORTHO05D004587 7.9e-20 102.8 79 67.1
Haze_16249 Corylus avellana HOM05D003886 ORTHO05D004587 1.8e-19 101.7 252 36.5
MBI11_g15900_MAGBIO Magnolia biondii HOM05D003886 ORTHO05D004587 1.8e-16 91.7 80 51.2
Nitab4.5_0000389g0110 Nicotiana tabacum HOM05D003886 ORTHO05D004587 5.8e-15 86.7 142 38.0
arahy.Tifrunner.gnm1.ann1.6KK5MR Arachis hypogaea HOM05D003886 ORTHO05D004587 2.5e-10 71.2 85 49.4
arahy.Tifrunner.gnm1.ann1.K7FQ1R Arachis hypogaea HOM05D003886 ORTHO05D019782 2.8e-09 67.8 77 50.6
SHI49864 Sapria himalayana HOM05D003886 ORTHO05D004587 1.4e-08 65.5 51 62.7
CAN.G1600.1 Capsicum annuum HOM05D003886 ORTHO05D004587 6.9e-08 63.2 55 56.4
Lj5C312T17 Lonicera japonica HOM05D001538 ORTHO05D004587 9.0e-08 62.8 50 64.0
arahy.Tifrunner.gnm1.ann1.RANL81 Arachis hypogaea HOM05D003886 ORTHO05D004587 5.9e-07 60.1 100 42.0
BcaB05g25166 Brassica carinata HOM05D000912 ORTHO05D001232 5.9e-07 60.1 100 36.0


User provided reference genes

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