Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0192 Marchantia polymorpha HOM05D004782 ORTHO05D005498 9.3e-135 483.8 290 100.0
MD17G1021600 Malus domestica HOM05D004782 ORTHO05D005498 6.2e-30 135.6 276 42.0
MD09G1021700 Malus domestica HOM05D004782 ORTHO05D005498 4.0e-29 132.9 275 41.8
EL10Ac6g14096 Beta vulgaris HOM05D004782 ORTHO05D005498 4.4e-28 129.4 275 40.4
AUR62028428 Chenopodium quinoa HOM05D004782 ORTHO05D005498 3.8e-27 126.3 209 36.8
Dinv25722 Davidia involucrata HOM05D004782 ORTHO05D005498 3.8e-27 126.3 284 34.9
SEGI_27694 Sequoiadendron giganteum HOM05D004782 ORTHO05D005498 4.9e-27 125.9 286 34.3
SMO119G0179 Selaginella moellendorffii HOM05D004782 ORTHO05D005498 6.4e-27 125.6 114 52.6
CAN.G473.32 Capsicum annuum HOM05D004782 ORTHO05D005498 8.4e-27 125.2 280 36.8
TWI36G0764 Tripterygium wilfordii HOM05D004782 ORTHO05D005498 1.4e-26 124.4 275 35.6
Haze_14764 Corylus avellana HOM05D004782 ORTHO05D005498 1.9e-26 124.0 275 37.5
MSTRG.3133 Avicennia marina HOM05D004782 ORTHO05D005498 2.4e-26 123.6 267 41.6
CSS0038869 Camellia sinensis var. sinensis HOM05D004782 ORTHO05D005498 2.4e-26 123.6 276 35.5
CiPaw.03G046200 Carya illinoinensis HOM05D004782 ORTHO05D005498 2.4e-26 123.6 209 49.3
BcaNung03155 Brassica carinata HOM05D004782 ORTHO05D005498 4.1e-26 122.9 253 44.3
Hma1.2p1_0818F.1_g223300 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 4.1e-26 122.9 275 35.6
Sopen02g038150 Solanum pennellii HOM05D004782 ORTHO05D005498 4.1e-26 122.9 271 36.2
Actinidia18440 Actinidia chinensis HOM05D004782 ORTHO05D005498 5.4e-26 122.5 245 34.7
Hund13000 Selenicereus undatus HOM05D004782 ORTHO05D005498 7.1e-26 122.1 279 36.6
THA.LOC104802393 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 7.1e-26 122.1 241 44.4
PSO478G2740 Papaver somniferum HOM05D004782 ORTHO05D005498 9.2e-26 121.7 284 41.5
Cc07_g00060 Coffea canephora HOM05D004782 ORTHO05D005498 1.2e-25 121.3 275 35.3
COL.COLO4_29185 Corchorus olitorius HOM05D004782 ORTHO05D005498 1.2e-25 121.3 280 34.3
AL6G25170 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 1.6e-25 120.9 254 42.1
BcaB01g06372 Brassica carinata HOM05D004782 ORTHO05D005498 1.6e-25 120.9 243 42.0
Nn3g16678 Nelumbo nucifera HOM05D004782 ORTHO05D005498 2.1e-25 120.6 276 34.4
Solyc02g093510.3 Solanum lycopersicum HOM05D004782 ORTHO05D005498 2.1e-25 120.6 280 36.1
FvH4_6g51920 Fragaria vesca HOM05D004782 ORTHO05D005498 2.7e-25 120.2 277 40.8
Sed0010446 Sechium edule HOM05D004782 ORTHO05D005498 2.7e-25 120.2 240 35.0
HanXRQChr14g0451131 Helianthus annuus HOM05D004782 ORTHO05D005498 3.5e-25 119.8 289 40.5
SGA_v2.0_scaffold135G34920 Striga asiatica HOM05D004782 ORTHO05D005498 3.5e-25 119.8 278 38.1
Rhsim08G0048200 Rhododendron simsii HOM05D004782 ORTHO05D005498 4.6e-25 119.4 277 35.7
Dinv33420 Davidia involucrata HOM05D004782 ORTHO05D005498 6.0e-25 119.0 253 36.0
BraA02t05220Z Brassica rapa HOM05D004782 ORTHO05D005498 7.8e-25 118.6 228 43.0
Duzib147G0999 Durio zibethinus HOM05D004782 ORTHO05D005498 7.8e-25 118.6 278 35.6
SalBow1G0524 Salvia bowleyana HOM05D004782 ORTHO05D005498 7.8e-25 118.6 260 41.5
A03p06620 Brassica napus HOM05D004782 ORTHO05D005498 1.0e-24 118.2 229 42.8
BraA03t09994Z Brassica rapa HOM05D004782 ORTHO05D005498 1.3e-24 117.9 229 42.8
Cfa007334 Carpinus fangiana HOM05D004782 ORTHO05D005498 1.7e-24 117.5 279 33.0
FAN14G2962 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.7e-24 117.5 280 40.7
PSO017G6962 Papaver somniferum HOM05D004782 ORTHO05D005498 2.3e-24 117.1 283 41.0
PGR142G1749 Punica granatum HOM05D004782 ORTHO05D005498 2.3e-24 117.1 258 42.2
SGA_v2.0_scaffold18G08270 Striga asiatica HOM05D001715 ORTHO05D004824 2.3e-24 117.1 274 33.6
Aqoxy3G01250 Aquilegia oxysepala HOM05D004782 ORTHO05D005498 3.0e-24 116.7 280 37.9
C02p06750 Brassica napus HOM05D004782 ORTHO05D005498 3.0e-24 116.7 257 44.0
Sp6g29580 Schrenkiella parvula HOM05D004782 ORTHO05D005498 3.0e-24 116.7 232 45.3
Lsat_1_v5_gn_2_91141 Lactuca sativa HOM05D004782 ORTHO05D005498 3.9e-24 116.3 275 39.3
Peaxi162Scf00420g00132 Petunia axillaris HOM05D004782 ORTHO05D005498 3.9e-24 116.3 272 41.5
Sabra16G0222000 Salix brachista HOM05D004782 ORTHO05D005498 5.1e-24 115.9 274 33.2
AT5G14440 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 6.6e-24 115.5 253 42.7
Prupe.3G294600 Prunus persica HOM05D004782 ORTHO05D005498 8.6e-24 115.2 276 35.5
vmacro18299 Vaccinium macrocarpon HOM05D004782 ORTHO05D005498 8.6e-24 115.2 228 39.9
VMungo0647G2046 Vigna mungo HOM05D004782 ORTHO05D005498 8.6e-24 115.2 288 40.3
Zm00001eb424970 Zea mays HOM05D004782 ORTHO05D005498 8.6e-24 115.2 274 35.0
Thhalv10014310m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 1.1e-23 114.8 224 40.2
PSO339G5508 Papaver somniferum HOM05D004782 ORTHO05D005498 1.1e-23 114.8 279 33.0
DCAR_011265 Daucus carota HOM05D004782 ORTHO05D005498 1.5e-23 114.4 259 38.6
TAR374G0154 Trochodendron aralioides HOM05D004782 ORTHO05D005498 1.5e-23 114.4 278 34.5
CARHR198870 Cardamine hirsuta HOM05D004782 ORTHO05D005498 1.9e-23 114.0 277 42.2
Migut.H00022 Erythranthe guttata HOM05D004782 ORTHO05D005498 1.9e-23 114.0 278 36.7
Aa31LG11G15220 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.5e-23 113.6 280 41.4
CsaV3_3G042920 Cucumis sativus L. HOM05D004782 ORTHO05D005498 3.3e-23 113.2 286 40.2
ECA238G0280 Erigeron canadensis HOM05D004782 ORTHO05D005498 3.3e-23 113.2 243 44.9
Gohir.D10G085900 Gossypium hirsutum HOM05D004782 ORTHO05D005498 3.3e-23 113.2 280 40.7
C03p07650 Brassica napus HOM05D004782 ORTHO05D005498 4.3e-23 112.8 241 42.7
Carub.0006s1262 Capsella rubella HOM05D004782 ORTHO05D005498 5.6e-23 112.5 246 43.1
BolC2t06621H Brassica oleracea HOM05D004782 ORTHO05D005498 9.6e-23 111.7 263 41.8
Hma1.2p1_1747F.1_g300620 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 9.6e-23 111.7 126 44.4
Lalb_Chr14g0362901 Lupinus albus HOM05D004782 ORTHO05D005498 1.2e-22 111.3 276 37.0
Gorai.011G094100 Gossypium raimondii HOM05D004782 ORTHO05D005498 1.6e-22 110.9 280 40.4
RcHm_v2.0_Chr2g0173401 Rosa chinensis HOM05D004782 ORTHO05D005498 1.6e-22 110.9 283 42.8
Sc03g0007250 Simmondsia chinensis HOM05D004782 ORTHO05D005498 1.6e-22 110.9 276 38.8
CANSAT01G0425 Cannabis sativa HOM05D004782 ORTHO05D005498 2.1e-22 110.5 239 38.5
Ciclev10018402m.g Citrus clementina HOM05D004782 ORTHO05D005498 2.1e-22 110.5 276 36.6
Ah.02g128240 Amaranthus hybridus HOM05D004782 ORTHO05D005498 2.8e-22 110.2 275 38.9
ATR0122G021 Amborella trichopoda HOM05D004782 ORTHO05D005498 2.8e-22 110.2 279 36.6
BolC3t13265H Brassica oleracea HOM05D004782 ORTHO05D005498 3.6e-22 109.8 241 41.1
QL02p073881 Quercus lobata HOM05D004782 ORTHO05D005498 3.6e-22 109.8 284 41.5
AagrBONN_evm.TU.Sc2ySwM_368.1010 Anthoceros agrestis HOM05D004782 ORTHO05D005498 6.2e-22 109.0 288 40.3
A02p02500 Brassica napus HOM05D004782 ORTHO05D005498 6.2e-22 109.0 242 37.6
ClCG10G013750 Citrullus lanatus HOM05D004782 ORTHO05D005498 6.2e-22 109.0 277 32.5
PGSC0003DMG400012612 Solanum tuberosum HOM05D004782 ORTHO05D005498 6.2e-22 109.0 262 33.6
BcaC03g13490 Brassica carinata HOM05D004782 ORTHO05D005498 8.1e-22 108.6 262 42.0
CDE09G1218 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 8.1e-22 108.6 284 31.0
Psat5g038480 Pisum sativum HOM05D004782 ORTHO05D005498 1.1e-21 108.2 278 38.5
Manes.15G152300 Manihot esculenta HOM05D004782 ORTHO05D005498 1.4e-21 107.8 275 37.8
CDE02G1226 Ceratophyllum demersum HOM05D004782 ORTHO05D005498 1.8e-21 107.5 275 30.5
MELO3C026593.2 Cucumis melo HOM05D004782 ORTHO05D005498 1.8e-21 107.5 277 35.0
BcaC03g13488 Brassica carinata HOM05D004782 ORTHO05D005498 2.4e-21 107.1 146 41.1
Gohir.A10G101700 Gossypium hirsutum HOM05D004782 ORTHO05D005498 2.4e-21 107.1 280 38.2
Hma1.2p1_1563F.1_g290780 Hydrangea macrophylla HOM05D004782 ORTHO05D005498 3.1e-21 106.7 95 49.5
TPR.G1089 Trifolium pratense HOM05D004782 ORTHO05D005498 3.1e-21 106.7 282 36.9
Atru.chr6.2436 Acer truncatum HOM05D004782 ORTHO05D005498 6.9e-21 105.5 293 32.1
FAN05G5758 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.2e-20 104.8 297 34.7
Os04g0480400 Oryza sativa ssp. japonica HOM05D004782 ORTHO05D005498 1.2e-20 104.8 272 36.0
Phvul.008G228200 Phaseolus vulgaris HOM05D004782 ORTHO05D005498 1.5e-20 104.4 283 37.8
unitig_62.g23373 Utricularia gibba HOM05D004782 ORTHO05D005498 1.5e-20 104.4 275 36.0
Cpa.g.sc130.76 Carica papaya HOM05D004782 ORTHO05D005498 2.0e-20 104.0 280 30.4
MBI06_g10164_MAGBIO Magnolia biondii HOM05D004782 ORTHO05D005498 2.0e-20 104.0 288 32.3
Thecc.04G020400 Theobroma cacao HOM05D004782 ORTHO05D005498 3.4e-20 103.2 278 36.0
Glyma.16G068500 Glycine max HOM05D004782 ORTHO05D005498 5.8e-20 102.4 282 36.9
BcaC03g13487 Brassica carinata HOM05D000631 ORTHO05D005498 7.6e-20 102.1 125 44.0
Ca_07059_v3 Cicer arietinum L. HOM05D004782 ORTHO05D005498 7.6e-20 102.1 280 36.4
Medtr7g033120 Medicago truncatula HOM05D004782 ORTHO05D005498 7.6e-20 102.1 275 38.2
Potri.001G342400 Populus trichocarpa HOM05D004782 ORTHO05D005498 7.6e-20 102.1 283 31.8
Lj1g0001798 Lotus japonicus HOM05D004782 ORTHO05D005498 1.3e-19 101.3 275 33.8
BcaNung03158 Brassica carinata HOM05D004782 ORTHO05D005498 1.7e-19 100.9 118 44.1
Glyma.16G018100 Glycine max HOM05D004782 ORTHO05D005498 1.7e-19 100.9 288 32.6
Nitab4.5_0001562g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 2.2e-19 100.5 253 42.7
DCAR_021737 Daucus carota HOM05D004782 ORTHO05D005498 3.8e-19 99.8 126 38.9
Eucgr.I01726 Eucalyptus grandis HOM05D004782 ORTHO05D005498 1.4e-18 97.8 275 36.0
Sp7g01290 Schrenkiella parvula HOM05D004782 ORTHO05D005498 1.4e-18 97.8 109 42.2
Aa31LG9G1060 Aethionema arabicum HOM05D004782 ORTHO05D005498 2.4e-18 97.1 109 43.1
Lju41A44T82 Lonicera japonica HOM05D004782 ORTHO05D005498 5.4e-18 95.9 235 32.3
CiPaw.04G029900 Carya illinoinensis HOM05D004782 ORTHO05D005498 1.2e-17 94.7 209 31.6
FAN02G4014 Fragaria x ananassa HOM05D004782 ORTHO05D005498 1.6e-17 94.4 289 33.9
Actinidia33328 Actinidia chinensis HOM05D004782 ORTHO05D005498 2.1e-17 94.0 98 44.9
Carub.0007s3495 Capsella rubella HOM05D004782 ORTHO05D005498 2.1e-17 94.0 137 38.7
BcaB02g07942 Brassica carinata HOM05D004782 ORTHO05D005498 2.7e-17 93.6 99 44.4
CARHR261410 Cardamine hirsuta HOM05D004782 ORTHO05D005498 2.7e-17 93.6 134 38.1
FAN09G1186 Fragaria x ananassa HOM05D004782 ORTHO05D005498 7.8e-17 92.0 95 44.2
PGR083G1527 Punica granatum HOM05D004782 ORTHO05D005498 1.7e-16 90.9 125 41.6
AT5G40570 Arabidopsis thaliana HOM05D004782 ORTHO05D005498 3.9e-16 89.7 134 38.8
BcaC08g44464 Brassica carinata HOM05D004782 ORTHO05D005498 8.7e-16 88.6 99 42.4
THA.LOC104805360 Tarenaya hassleriana HOM05D004782 ORTHO05D005498 1.1e-15 88.2 119 40.3
GSVIVG01032375001 Vitis vinifera HOM05D004782 ORTHO05D005498 4.3e-15 86.3 252 34.9
Thhalv10027935m.g Eutrema salsugineum HOM05D004782 ORTHO05D005498 5.6e-15 85.9 143 34.3
AL7G49230 Arabidopsis lyrata HOM05D004782 ORTHO05D005498 9.6e-15 85.1 143 37.8
BolC6t37113H Brassica oleracea HOM05D000001 ORTHO05D000003 1.6e-14 84.3 112 39.3
Nitab4.5_0006683g0090 Nicotiana tabacum HOM05D004782 ORTHO05D005498 1.6e-14 84.3 276 37.0
BolC7t41458H Brassica oleracea HOM05D004782 ORTHO05D005498 1.1e-13 81.6 99 38.4
BcaC01g01812 Brassica carinata HOM05D004782 ORTHO05D005498 1.8e-13 80.9 99 38.4
C08p04380 Brassica napus HOM05D004782 ORTHO05D005498 9.0e-13 78.6 127 33.9
C09p40620 Brassica napus HOM05D004782 ORTHO05D005498 3.4e-12 76.6 99 36.4
BcaC01g01740 Brassica carinata HOM05D004782 ORTHO05D005498 9.9e-12 75.1 99 36.4
BolC3t19536H Brassica oleracea HOM05D004782 ORTHO05D005498 9.9e-12 75.1 99 36.4
C05p55830 Brassica napus HOM05D004782 ORTHO05D005498 2.2e-11 73.9 87 39.1
BcaC04g20684 Brassica carinata HOM05D004782 ORTHO05D005498 4.9e-11 72.8 97 37.1
BcaC07g37075 Brassica carinata HOM05D004782 ORTHO05D005498 4.9e-11 72.8 88 39.8
BcaC05g29299 Brassica carinata HOM05D004782 ORTHO05D014986 1.4e-10 71.2 126 34.1
BolC8t47241H Brassica oleracea HOM05D004782 ORTHO05D005498 1.9e-10 70.9 84 39.3
C07p10120 Brassica napus HOM05D000186 ORTHO05D005498 4.2e-10 69.7 88 37.5
C03p72400 Brassica napus HOM05D000186 ORTHO05D005498 3.5e-09 66.6 86 36.0
BolC5t34251H Brassica oleracea HOM05D004782 ORTHO05D005498 4.6e-09 66.2 87 36.8
BolC9t56944H Brassica oleracea HOM05D004782 ORTHO05D005498 1.3e-08 64.7 119 30.3
CBR_g2746 Chara braunii HOM05D001539 ORTHO05D000937 1.1e-07 61.6 338 24.0
Sabra15G0083700 Salix brachista HOM05D004782 ORTHO05D005498 1.9e-07 60.8 60 48.3
arahy.Tifrunner.gnm1.ann1.65GF4N Arachis hypogaea HOM05D004782 ORTHO05D005498 9.6e-07 58.5 214 35.5
arahy.Tifrunner.gnm1.ann1.6S1J49 Arachis hypogaea HOM05D004782 ORTHO05D005498 6.2e-06 55.8 213 34.7


User provided reference genes

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