Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0175 Marchantia polymorpha HOM05D004850 ORTHO05D005971 7.3e-261 903.3 434 100.0
SMO353G0234 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 2.3e-190 669.1 436 71.8
CDE11G0367 Ceratophyllum demersum HOM05D004850 ORTHO05D005971 1.0e-185 653.7 425 71.5
ATR0049G003 Amborella trichopoda HOM05D004850 ORTHO05D005971 1.3e-185 653.3 425 70.4
AagrBONN_evm.TU.Sc2ySwM_117.1258 Anthoceros agrestis HOM05D004850 ORTHO05D005971 2.9e-185 652.1 430 70.7
Nn6g33598 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.8e-182 642.9 427 70.5
Aqoxy3G02383 Aquilegia oxysepala HOM05D004850 ORTHO05D005971 6.8e-182 641.0 426 70.4
MD06G1033100 Malus domestica HOM05D004850 ORTHO05D005971 8.9e-182 640.6 427 71.0
TAR629G1238 Trochodendron aralioides HOM05D004850 ORTHO05D005971 3.4e-181 638.6 426 70.4
Cfa012428 Carpinus fangiana HOM05D004850 ORTHO05D005971 9.8e-181 637.1 441 69.6
Hma1.2p1_0991F.1_g245100 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 1.3e-180 636.7 427 71.0
CiPaw.11G092600 Carya illinoinensis HOM05D004850 ORTHO05D005971 2.2e-180 636.0 426 70.0
Prupe.5G038300 Prunus persica HOM05D004850 ORTHO05D005971 4.9e-180 634.8 427 70.3
Haze_08241 Corylus avellana HOM05D004850 ORTHO05D005971 6.3e-180 634.4 426 70.9
Solyc08g076990.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 8.3e-180 634.0 427 70.5
HPP92_001721 Vanilla planifolia HOM05D004850 ORTHO05D005971 1.1e-179 633.6 426 69.0
Eucgr.D02190 Eucalyptus grandis HOM05D004850 ORTHO05D005971 2.4e-179 632.5 427 70.5
Gohir.D03G170933 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.4e-179 632.5 426 69.2
Peaxi162Scf00460g00615 Petunia axillaris HOM05D004850 ORTHO05D005971 2.4e-179 632.5 427 69.8
Pp3c6_20970 Physcomitrium patens HOM05D004850 ORTHO05D005971 3.1e-179 632.1 431 68.4
Potri.001G143200 Populus trichocarpa HOM05D004850 ORTHO05D005971 4.1e-179 631.7 437 68.9
RcHm_v2.0_Chr7g0209441 Rosa chinensis HOM05D004850 ORTHO05D005971 5.4e-179 631.3 427 69.6
Sopen08g025570 Solanum pennellii HOM05D004850 ORTHO05D005971 5.4e-179 631.3 427 70.0
MD16G1275900 Malus domestica HOM05D004850 ORTHO05D005971 7.0e-179 630.9 427 70.5
ECA233G2661 Erigeron canadensis HOM05D004850 ORTHO05D005971 9.2e-179 630.6 427 69.8
Dinv25211 Davidia involucrata HOM05D004850 ORTHO05D005971 1.2e-178 630.2 427 69.3
TWI15G0149 Tripterygium wilfordii HOM05D004850 ORTHO05D005971 1.2e-178 630.2 427 69.3
Gohir.A03G001400 Gossypium hirsutum HOM05D004850 ORTHO05D005971 2.0e-178 629.4 426 69.0
Manes.17G013000 Manihot esculenta HOM05D004850 ORTHO05D005971 2.0e-178 629.4 427 69.8
PGR031G0111 Punica granatum HOM05D004850 ORTHO05D005971 1.0e-177 627.1 427 68.9
FAN13G0589 Fragaria x ananassa HOM05D004850 ORTHO05D005971 1.7e-177 626.3 427 69.6
MSTRG.1982 Avicennia marina HOM05D004850 ORTHO05D005971 2.3e-177 625.9 427 70.0
HanXRQChr06g0178401 Helianthus annuus HOM05D004850 ORTHO05D005971 2.9e-177 625.5 427 68.9
Duzib084G0351 Durio zibethinus HOM05D004850 ORTHO05D005971 3.9e-177 625.2 427 69.8
Lj2g0005935 Lotus japonicus HOM05D004850 ORTHO05D005971 3.9e-177 625.2 427 68.9
arahy.Tifrunner.gnm1.ann1.IM2DA2 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.0e-177 624.8 426 69.0
arahy.Tifrunner.gnm1.ann1.Y05B39 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.0e-177 624.8 426 69.0
CSS0027944 Camellia sinensis var. sinensis HOM05D004850 ORTHO05D005971 5.0e-177 624.8 427 69.3
Migut.E00931 Erythranthe guttata HOM05D004850 ORTHO05D005971 5.0e-177 624.8 427 69.3
unitig_21.g20382 Utricularia gibba HOM05D004850 ORTHO05D005971 5.0e-177 624.8 427 69.8
FAN08G3086 Fragaria x ananassa HOM05D004850 ORTHO05D005971 6.6e-177 624.4 427 69.6
Lalb_Chr05g0213951 Lupinus albus HOM05D004850 ORTHO05D005971 6.6e-177 624.4 427 69.1
Potri.003G091100 Populus trichocarpa HOM05D004850 ORTHO05D005971 8.6e-177 624.0 432 69.2
VMungo1215G1005 Vigna mungo HOM05D004850 ORTHO05D005971 8.6e-177 624.0 427 67.7
Lsat_1_v5_gn_6_64460 Lactuca sativa HOM05D004850 ORTHO05D005971 1.5e-176 623.2 426 69.0
Ciclev10031569m.g Citrus clementina HOM05D004850 ORTHO05D005971 2.5e-176 622.5 427 68.1
FvH4_5g21890 Fragaria vesca HOM05D004850 ORTHO05D005971 2.5e-176 622.5 427 69.6
Lalb_Chr16g0379121 Lupinus albus HOM05D004850 ORTHO05D005971 2.5e-176 622.5 427 67.9
A03p50790 Brassica napus HOM05D004850 ORTHO05D005971 3.3e-176 622.1 426 68.3
C07p49180 Brassica napus HOM05D004850 ORTHO05D005971 3.3e-176 622.1 426 68.3
BolC7t45428H Brassica oleracea HOM05D004850 ORTHO05D005971 3.3e-176 622.1 426 68.3
CANSAT21G2632 Cannabis sativa HOM05D004850 ORTHO05D005971 3.3e-176 622.1 427 68.9
FAN18G1246 Fragaria x ananassa HOM05D004850 ORTHO05D005971 3.3e-176 622.1 427 69.6
Glyma.11G043300 Glycine max HOM05D004850 ORTHO05D005971 5.6e-176 621.3 427 68.1
PSO063G6489 Papaver somniferum HOM05D004850 ORTHO05D005971 5.6e-176 621.3 426 68.1
Actinidia03377 Actinidia chinensis HOM05D004850 ORTHO05D005971 7.3e-176 620.9 427 68.4
CAN.G1381.2 Capsicum annuum HOM05D004850 ORTHO05D005971 9.5e-176 620.5 427 68.4
Nitab4.5_0001963g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 9.5e-176 620.5 436 68.3
Phvul.002G007200 Phaseolus vulgaris HOM05D004850 ORTHO05D005971 9.5e-176 620.5 427 67.4
COL.COLO4_17049 Corchorus olitorius HOM05D004850 ORTHO05D005971 1.2e-175 620.2 426 68.8
Ca_24651_v3 Cicer arietinum L. HOM05D004850 ORTHO05D005971 1.6e-175 619.8 427 67.9
A01p09880 Brassica napus HOM05D004850 ORTHO05D005971 2.8e-175 619.0 426 68.1
Thecc.03G228700 Theobroma cacao HOM05D004850 ORTHO05D005971 2.8e-175 619.0 427 68.4
Psat2g173240 Pisum sativum HOM05D004850 ORTHO05D005971 6.1e-175 617.8 427 67.4
BraA03t14168Z Brassica rapa HOM05D004850 ORTHO05D005971 8.0e-175 617.5 426 68.1
Duzib205G2010 Durio zibethinus HOM05D004850 ORTHO05D005971 8.0e-175 617.5 427 69.1
BcaC09g51599 Brassica carinata HOM05D004850 ORTHO05D005971 1.8e-174 616.3 426 67.4
Sp7g16280 Schrenkiella parvula HOM05D004850 ORTHO05D005971 4.0e-174 615.1 426 67.6
AT4G17830 Arabidopsis thaliana HOM05D004850 ORTHO05D005971 2.0e-173 612.8 426 67.1
THA.LOC104827763 Tarenaya hassleriana HOM05D004850 ORTHO05D005971 2.6e-173 612.5 426 67.1
AL7G36700 Arabidopsis lyrata HOM05D004850 ORTHO05D005971 3.4e-173 612.1 426 67.1
Carub.0007s2353 Capsella rubella HOM05D004850 ORTHO05D005971 3.4e-173 612.1 426 66.9
Sabra01G0111700 Salix brachista HOM05D004850 ORTHO05D005971 3.4e-173 612.1 475 63.2
Medtr5g014410 Medicago truncatula HOM05D004850 ORTHO05D005971 5.8e-173 611.3 427 66.7
CARHR224550 Cardamine hirsuta HOM05D004850 ORTHO05D005971 7.5e-173 610.9 426 66.9
Aa31LG6G570 Aethionema arabicum HOM05D004850 ORTHO05D005971 1.3e-172 610.1 427 67.7
Cpa.g.sc239.6 Carica papaya HOM05D004850 ORTHO05D005971 1.7e-172 609.8 427 69.1
BraA01t00932Z Brassica rapa HOM05D004850 ORTHO05D005971 2.9e-172 609.0 441 65.8
Thhalv10025214m.g Eutrema salsugineum HOM05D004850 ORTHO05D005971 2.9e-172 609.0 426 66.9
EL10Ac5g12130 Beta vulgaris HOM05D004850 ORTHO05D005971 1.9e-171 606.3 427 67.9
CBR_g51240 Chara braunii HOM05D004850 ORTHO05D005971 1.2e-170 603.6 434 64.1
Psat2g173320 Pisum sativum HOM05D004850 ORTHO05D005971 3.5e-170 602.1 427 66.0
HanXRQChr10g0285061 Helianthus annuus HOM05D004850 ORTHO05D005971 4.6e-170 601.7 434 66.1
Lj2A240G35 Lonicera japonica HOM05D004850 ORTHO05D005971 6.0e-170 601.3 484 61.2
AUR62018722 Chenopodium quinoa HOM05D004850 ORTHO05D005971 6.6e-169 597.8 427 67.4
Os02g0690800 Oryza sativa ssp. japonica HOM05D004850 ORTHO05D005971 8.6e-169 597.4 428 66.4
Cre02.g105500 Chlamydomonas reinhardtii HOM05D004850 ORTHO05D005971 1.1e-168 597.0 429 63.6
Sopen08g025560 Solanum pennellii HOM05D004850 ORTHO05D005971 1.1e-168 597.0 426 64.8
MELO3C003400.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.5e-168 596.7 436 64.4
Sopen08g025550 Solanum pennellii HOM05D004850 ORTHO05D005971 1.9e-168 596.3 425 65.9
Solyc08g076970.3 Solanum lycopersicum HOM05D004850 ORTHO05D005971 7.3e-168 594.3 425 65.6
Oeu006991.2 Olea europaea HOM05D004850 ORTHO05D005971 2.8e-167 592.4 498 59.4
ClCG09G012040 Citrullus lanatus HOM05D004850 ORTHO05D005971 4.7e-167 591.7 435 61.8
Zm00001eb251190 Zea mays HOM05D004850 ORTHO05D005971 8.0e-167 590.9 430 65.6
Ah.12g054980 Amaranthus hybridus HOM05D004850 ORTHO05D005971 1.1e-166 590.5 427 66.3
Gorai.003G181400 Gossypium raimondii HOM05D004850 ORTHO05D005971 4.0e-166 588.6 393 69.7
Sc01g0007470 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.5e-165 586.6 436 65.4
Sed0023890 Sechium edule HOM05D004850 ORTHO05D005971 9.8e-165 583.9 426 63.4
SGA_v2.0_scaffold20G09279 Striga asiatica HOM05D004850 ORTHO05D005971 1.3e-164 583.6 512 57.2
Sabra03G0060800 Salix brachista HOM05D004850 ORTHO05D005971 1.4e-163 580.1 404 69.3
PGSC0003DMG400017513 Solanum tuberosum HOM05D004850 ORTHO05D005971 1.9e-163 579.7 425 64.7
vmacro00333 Vaccinium macrocarpon HOM05D004850 ORTHO05D005971 2.4e-163 579.3 402 68.9
Solyc08g076980.4 Solanum lycopersicum HOM05D004850 ORTHO05D005971 3.2e-163 578.9 426 64.1
DCAR_031774 Daucus carota HOM05D004850 ORTHO05D005971 3.5e-162 575.5 395 68.4
Sed0011615 Sechium edule HOM05D004850 ORTHO05D005971 1.0e-161 573.9 426 61.5
Rhsim11G0014400 Rhododendron simsii HOM05D004850 ORTHO05D005971 5.1e-161 571.6 408 67.6
Dinv28952 Davidia involucrata HOM05D004850 ORTHO05D005971 1.1e-160 570.5 380 70.8
ClCG09G012030 Citrullus lanatus HOM05D004850 ORTHO05D005971 9.9e-157 557.4 425 60.9
Nn1g00519 Nelumbo nucifera HOM05D004850 ORTHO05D005971 1.8e-150 536.6 427 63.0
SMO116G0259 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 5.8e-149 531.6 431 59.9
CsaV3_3G049280 Cucumis sativus L. HOM05D004850 ORTHO05D005971 4.2e-147 525.4 430 57.9
MELO3C003399.2 Cucumis melo HOM05D004850 ORTHO05D005971 5.4e-147 525.0 430 57.9
MELO3C003398.2 Cucumis melo HOM05D004850 ORTHO05D005971 1.0e-145 520.8 435 58.4
GSVIVG01013167001 Vitis vinifera HOM05D004850 ORTHO05D005971 3.9e-145 518.8 341 71.8
MCO07G613 Micromonas commoda HOM05D004850 ORTHO05D005971 1.9e-144 516.5 432 57.9
Cc11_g03830 Coffea canephora HOM05D004850 ORTHO05D005971 8.1e-143 511.1 330 72.1
Atru.chr6.1718 Acer truncatum HOM05D004850 ORTHO05D005971 4.9e-140 501.9 340 70.0
Cc00_g30170 Coffea canephora HOM05D004850 ORTHO05D005971 1.2e-138 497.3 329 71.7
BolC1t01126H Brassica oleracea HOM05D004850 ORTHO05D005971 3.1e-134 482.6 356 64.6
AUR62007282 Chenopodium quinoa HOM05D004850 ORTHO05D005971 1.3e-132 477.2 377 63.1
CsaV3_3G049270 Cucumis sativus L. HOM05D004850 ORTHO05D005971 7.1e-131 471.5 338 66.0
ClCG09G012020 Citrullus lanatus HOM05D004850 ORTHO05D005971 1.1e-128 464.2 341 64.5
Actinidia28173 Actinidia chinensis HOM05D004850 ORTHO05D005971 6.2e-127 458.4 436 55.5
QL12p005631 Quercus lobata HOM05D004850 ORTHO05D005971 3.9e-121 439.1 282 72.7
C01p11580 Brassica napus HOM05D004850 ORTHO05D005971 2.6e-109 399.8 386 53.1
MD06G1033200 Malus domestica HOM05D004850 ORTHO05D005971 9.4e-91 338.2 353 50.7
Glyma.01G198600 Glycine max HOM05D004850 ORTHO05D005971 8.2e-87 325.1 232 68.1
Nitab4.5_0008181g0010 Nicotiana tabacum HOM05D004850 ORTHO05D005971 1.0e-81 308.1 216 69.0
arahy.Tifrunner.gnm1.ann1.XXZT2J Arachis hypogaea HOM05D004850 ORTHO05D005971 1.4e-73 281.2 228 58.8
SHI07365 Sapria himalayana HOM05D004850 ORTHO05D005971 2.6e-64 250.4 180 67.8
HPP92_001566 Vanilla planifolia HOM05D004850 ORTHO05D005971 5.0e-60 236.1 197 61.4
Sc02g0006900 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.7e-58 229.6 157 70.1
Sc03g0003930 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.4e-57 228.0 149 70.5
Cc08_g02610 Coffea canephora HOM05D004850 ORTHO05D005971 5.0e-52 209.5 147 66.0
FAN04G0574 Fragaria x ananassa HOM05D004850 ORTHO05D005971 2.7e-45 187.2 133 66.9
Actinidia25960 Actinidia chinensis HOM05D004850 ORTHO05D005971 1.0e-44 185.3 230 47.4
SEGI_04366 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 1.1e-43 181.8 148 60.8
Sc22g0003360 Simmondsia chinensis HOM05D004850 ORTHO05D005971 4.4e-40 169.9 113 70.8
BcaNung00053 Brassica carinata HOM05D004850 ORTHO05D005971 1.4e-33 148.3 139 51.8
arahy.Tifrunner.gnm1.ann1.RD5L31 Arachis hypogaea HOM05D004850 ORTHO05D005971 5.4e-30 136.3 93 68.8
Sc22g0003350 Simmondsia chinensis HOM05D004850 ORTHO05D005971 1.6e-29 134.8 87 71.3
SEGI_19032 Sequoiadendron giganteum HOM05D004850 ORTHO05D005971 7.3e-27 125.9 81 77.8
arahy.Tifrunner.gnm1.ann1.MBF31G Arachis hypogaea HOM05D004850 ORTHO05D005971 1.4e-25 121.7 167 41.9
SMO116G0465 Selaginella moellendorffii HOM05D004850 ORTHO05D005971 9.0e-25 119.0 251 33.9
MD02G1199500 Malus domestica HOM05D004850 ORTHO05D048674 4.4e-24 116.7 204 34.8
MD15G1380000 Malus domestica HOM05D004850 ORTHO05D048674 9.0e-17 92.4 57 68.4
SHI07376 Sapria himalayana HOM05D004850 ORTHO05D005971 1.2e-16 92.0 66 62.1
SHI07370 Sapria himalayana HOM05D004850 ORTHO05D005971 1.5e-16 91.7 67 53.7
Hma1.2p1_0090F.1_g045780 Hydrangea macrophylla HOM05D004850 ORTHO05D005971 2.6e-16 90.9 70 61.4
Cc06_g05830 Coffea canephora HOM05D004850 ORTHO05D005971 7.6e-16 89.4 62 66.1
arahy.Tifrunner.gnm1.ann1.00HL0A Arachis hypogaea HOM05D004850 ORTHO05D004353 6.9e-09 66.2 118 37.3
Lsat_1_v5_gn_9_53361 Lactuca sativa HOM05D003461 ORTHO05D004386 9.0e-09 65.9 36 72.2
Lsat_1_v5_gn_4_90040 Lactuca sativa HOM05D003461 ORTHO05D004386 2.6e-08 64.3 38 68.4
SMO353G0042 Selaginella moellendorffii HOM05D019014 ORTHO05D379427 3.8e-07 60.5 69 47.8
Pp3c18_13490 Physcomitrium patens HOM05D002051 ORTHO05D002041 1.4e-06 58.5 254 26.0
PGR044G1898 Punica granatum HOM05D002051 ORTHO05D002041 1.4e-06 58.5 251 27.1
Lsat_1_v5_gn_8_141060 Lactuca sativa HOM05D003461 ORTHO05D004386 2.5e-06 57.8 116 31.0


User provided reference genes

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