Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0171 Marchantia polymorpha HOM05D004071 ORTHO05D004501 4.7e-191 671.0 333 100.0
Pp3c7_9290 Physcomitrium patens HOM05D004071 ORTHO05D004501 4.7e-98 362.1 341 51.3
AagrBONN_evm.TU.Sc2ySwM_117.1813 Anthoceros agrestis HOM05D004071 ORTHO05D004501 5.0e-92 342.0 340 50.3
SMO164G0101 Selaginella moellendorffii HOM05D004071 ORTHO05D004501 3.4e-88 329.3 329 48.9
SEGI_38032 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 3.4e-88 329.3 342 48.2
MD17G1072900 Malus domestica HOM05D004071 ORTHO05D004501 7.5e-88 328.2 334 47.9
FAN09G0395 Fragaria x ananassa HOM05D000085 ORTHO05D004501 1.7e-87 327.0 342 46.5
Migut.K00863 Erythranthe guttata HOM05D004071 ORTHO05D004501 2.2e-87 326.6 341 46.3
Cfa007968 Carpinus fangiana HOM05D004071 ORTHO05D004501 2.8e-87 326.2 348 46.0
TAR622G0876 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.1e-86 322.8 342 46.5
Prupe.3G241500 Prunus persica HOM05D004071 ORTHO05D004501 4.1e-86 322.4 333 46.5
CiPaw.04G003700 Carya illinoinensis HOM05D004071 ORTHO05D004501 9.1e-86 321.2 336 45.8
Ciclev10012116m.g Citrus clementina HOM05D004071 ORTHO05D004501 1.2e-85 320.9 337 46.3
Cc07_g04980 Coffea canephora HOM05D004071 ORTHO05D004501 5.9e-85 318.5 341 45.7
DCAR_007521 Daucus carota HOM05D000912 ORTHO05D004501 7.7e-85 318.2 335 44.5
Thecc.04G143800 Theobroma cacao HOM05D004071 ORTHO05D004501 1.0e-84 317.8 341 46.3
CiPaw.03G006000 Carya illinoinensis HOM05D004071 ORTHO05D004501 1.3e-84 317.4 340 45.3
MELO3C022067.2 Cucumis melo HOM05D004071 ORTHO05D004501 1.3e-84 317.4 340 46.2
Sed0017773 Sechium edule HOM05D004071 ORTHO05D004501 3.8e-84 315.8 340 45.9
Hma1.2p1_0550F.1_g177140 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 6.5e-84 315.1 343 45.5
COL.COLO4_04619 Corchorus olitorius HOM05D004071 ORTHO05D004501 1.1e-83 314.3 341 45.7
CsaV3_5G039030 Cucumis sativus L. HOM05D004071 ORTHO05D004501 1.1e-83 314.3 341 46.3
Aqoxy3G00414 Aquilegia oxysepala HOM05D004071 ORTHO05D004501 2.5e-83 313.2 336 45.5
Oeu032872.2 Olea europaea HOM05D004071 ORTHO05D004501 2.5e-83 313.2 341 44.6
Atru.chr10.1868 Acer truncatum HOM05D004071 ORTHO05D004501 3.2e-83 312.8 345 44.9
Lsat_1_v5_gn_2_86560 Lactuca sativa HOM05D004071 ORTHO05D004501 3.2e-83 312.8 334 44.0
MD09G1082200 Malus domestica HOM05D004071 ORTHO05D004501 4.2e-83 312.4 334 45.8
ClCG11G005270 Citrullus lanatus HOM05D004071 ORTHO05D004501 7.2e-83 311.6 339 45.7
FvH4_6g45520 Fragaria vesca HOM05D004071 ORTHO05D004501 7.2e-83 311.6 337 45.1
arahy.Tifrunner.gnm1.ann1.UUQR92 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.2e-82 310.8 344 44.8
CSS0015718 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.2e-82 310.8 336 44.6
Lj2g0019369 Lotus japonicus HOM05D004071 ORTHO05D004501 1.2e-82 310.8 340 44.7
arahy.Tifrunner.gnm1.ann1.SG5ZZ4 Arachis hypogaea HOM05D004071 ORTHO05D004501 2.1e-82 310.1 344 44.8
CANSAT64G0921 Cannabis sativa HOM05D004071 ORTHO05D004501 3.6e-82 309.3 339 46.0
Cpa.g.sc179.42 Carica papaya HOM05D004071 ORTHO05D004501 1.0e-81 307.8 327 44.6
FAN02G1076 Fragaria x ananassa HOM05D000085 ORTHO05D004501 2.3e-81 306.6 336 44.9
Gorai.001G082400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.3e-81 306.6 342 43.6
Potri.004G104900 Populus trichocarpa HOM05D004071 ORTHO05D004501 2.3e-81 306.6 339 43.7
Gorai.001G203600 Gossypium raimondii HOM05D004071 ORTHO05D004501 3.0e-81 306.2 342 44.4
SGA_v2.0_scaffold204G41658 Striga asiatica HOM05D004071 ORTHO05D004501 4.0e-81 305.8 339 42.8
FAN14G5468 Fragaria x ananassa HOM05D000085 ORTHO05D004501 5.2e-81 305.4 336 44.6
Peaxi162Scf01056g00238 Petunia axillaris HOM05D004071 ORTHO05D004501 6.8e-81 305.1 341 44.6
Dinv34868 Davidia involucrata HOM05D004071 ORTHO05D004501 1.2e-80 304.3 336 44.0
FAN05G3345 Fragaria x ananassa HOM05D004071 ORTHO05D004501 1.2e-80 304.3 336 44.0
RcHm_v2.0_Chr2g0163461 Rosa chinensis HOM05D004071 ORTHO05D004501 1.2e-80 304.3 341 43.7
Migut.H00537 Erythranthe guttata HOM05D004071 ORTHO05D004501 1.5e-80 303.9 346 41.9
Nn3g17651 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.5e-80 303.9 340 42.9
Gohir.A07G073300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.0e-80 303.5 341 43.1
Gohir.D07G183200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.6e-80 303.1 343 44.6
Oeu049330.1 Olea europaea HOM05D004071 ORTHO05D004501 2.6e-80 303.1 327 43.4
CAN.G153.14 Capsicum annuum HOM05D004071 ORTHO05D004501 3.4e-80 302.8 343 42.0
MBI16_g36053_MAGBIO Magnolia biondii HOM05D004071 ORTHO05D004501 3.4e-80 302.8 366 43.7
Gohir.A07G176100 Gossypium hirsutum HOM05D004071 ORTHO05D004501 4.4e-80 302.4 340 45.0
PSO063G1546 Papaver somniferum HOM05D004071 ORTHO05D004501 2.2e-79 300.1 341 43.1
Duzib268G0320 Durio zibethinus HOM05D004071 ORTHO05D004501 2.8e-79 299.7 340 42.6
Glyma.13G047900 Glycine max HOM05D004071 ORTHO05D004501 3.7e-79 299.3 341 43.1
SalBow1G4702 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.7e-79 299.3 343 43.1
PSO782G5396 Papaver somniferum HOM05D004071 ORTHO05D004501 8.3e-79 298.1 342 42.4
TPR.G9685 Trifolium pratense HOM05D004071 ORTHO05D004501 1.4e-78 297.4 340 41.5
Oeu025120.1 Olea europaea HOM05D004071 ORTHO05D004501 1.8e-78 297.0 340 41.8
Psat1g062200 Pisum sativum HOM05D004071 ORTHO05D004501 1.8e-78 297.0 341 42.5
Hund13742 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.8e-78 297.0 346 43.6
GSVIVG01036463001 Vitis vinifera HOM05D004071 ORTHO05D004501 1.8e-78 297.0 334 41.9
Gohir.A08G037600 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-78 296.6 332 43.7
Gohir.D07G078000 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-78 296.6 358 41.6
SGA_v2.0_scaffold150G36618 Striga asiatica HOM05D002617 ORTHO05D009035 2.4e-78 296.6 325 44.3
Lsat_1_v5_gn_4_175840 Lactuca sativa HOM05D004071 ORTHO05D004501 3.1e-78 296.2 347 41.8
SalBow1G4945 Salvia bowleyana HOM05D004071 ORTHO05D004501 3.1e-78 296.2 343 42.9
THA.LOC104827150 Tarenaya hassleriana HOM05D004071 ORTHO05D004501 3.1e-78 296.2 340 43.2
ECA232G0981 Erigeron canadensis HOM05D004071 ORTHO05D004501 7.0e-78 295.0 333 43.2
Zm00001eb297500 Zea mays HOM05D004071 ORTHO05D004501 9.1e-78 294.7 344 43.9
MSTRG.23829 Avicennia marina HOM05D004071 ORTHO05D004501 1.2e-77 294.3 342 42.4
Gohir.D08G047900 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.2e-77 294.3 334 43.1
arahy.Tifrunner.gnm1.ann1.85GVTZ Arachis hypogaea HOM05D004071 ORTHO05D004501 2.0e-77 293.5 339 43.7
Medtr6g016780 Medicago truncatula HOM05D004071 ORTHO05D004501 2.7e-77 293.1 345 41.2
CARHR076390 Cardamine hirsuta HOM05D004071 ORTHO05D004501 4.5e-77 292.4 343 41.4
HanXRQChr09g0263441 Helianthus annuus HOM05D004071 ORTHO05D004501 4.5e-77 292.4 336 42.0
PGR042G1023 Punica granatum HOM05D004071 ORTHO05D004501 1.7e-76 290.4 336 41.4
HPP92_003788 Vanilla planifolia HOM05D004071 ORTHO05D004501 1.7e-76 290.4 333 42.3
Gorai.004G047400 Gossypium raimondii HOM05D004071 ORTHO05D004501 2.3e-76 290.0 334 43.1
CDE08G1388 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 2.9e-76 289.7 337 42.4
Ca_14084_v3 Cicer arietinum L. HOM05D004071 ORTHO05D004501 2.9e-76 289.7 344 41.6
Manes.02G065500 Manihot esculenta HOM05D004071 ORTHO05D004501 2.9e-76 289.7 344 42.4
HPP92_011599 Vanilla planifolia HOM05D004071 ORTHO05D004501 3.8e-76 289.3 329 41.3
Phvul.004G073300 Phaseolus vulgaris HOM05D004071 ORTHO05D004501 6.6e-76 288.5 338 41.4
Sed0022702 Sechium edule HOM05D004071 ORTHO05D004501 6.6e-76 288.5 323 45.2
Rhsim08G0080100 Rhododendron simsii HOM05D004071 ORTHO05D004501 8.6e-76 288.1 335 40.9
Os05g0589000 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 1.5e-75 287.3 344 41.9
Actinidia26308 Actinidia chinensis HOM05D004071 ORTHO05D004501 1.9e-75 287.0 342 42.1
EL10Ac2g04623 Beta vulgaris HOM05D004071 ORTHO05D004501 1.9e-75 287.0 346 41.0
PSO017G6828 Papaver somniferum HOM05D004071 ORTHO05D004501 2.5e-75 286.6 340 40.6
PGSC0003DMG400018768 Solanum tuberosum HOM05D004071 ORTHO05D004501 2.5e-75 286.6 345 40.6
Os01g0604700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 3.3e-75 286.2 339 43.1
AUR62008952 Chenopodium quinoa HOM05D004071 ORTHO05D004501 7.2e-75 285.0 327 42.5
TWI74G0934 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 7.2e-75 285.0 338 43.5
Solyc03g045090.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 2.1e-74 283.5 350 40.6
Zm00001eb161490 Zea mays HOM05D004071 ORTHO05D004501 2.1e-74 283.5 339 42.2
TAR629G1013 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.6e-74 282.7 342 40.1
HanXRQChr07g0200191 Helianthus annuus HOM05D004071 ORTHO05D004501 6.1e-74 282.0 338 40.5
Hma1.2p1_0136F.1_g061955 Hydrangea macrophylla HOM05D004071 ORTHO05D004501 5.2e-73 278.9 296 43.9
PSO478G0222 Papaver somniferum HOM05D004071 ORTHO05D004501 1.2e-72 277.7 341 39.6
Sopen03g009550 Solanum pennellii HOM05D004071 ORTHO05D004501 1.2e-72 277.7 350 39.7
Lj4A130T17 Lonicera japonica HOM05D004071 ORTHO05D004501 1.5e-72 277.3 347 40.1
Ah.16g102220 Amaranthus hybridus HOM05D004071 ORTHO05D004501 3.4e-72 276.2 348 40.2
BcaC05g30354 Brassica carinata HOM05D004071 ORTHO05D004501 7.5e-72 275.0 335 40.0
VMungo0464G1781 Vigna mungo HOM05D004071 ORTHO05D004501 1.3e-71 274.2 338 39.3
Lalb_Chr17g0336551 Lupinus albus HOM05D004071 ORTHO05D004501 1.1e-70 271.2 353 39.1
Rhsim10G0064500 Rhododendron simsii HOM05D004071 ORTHO05D004501 1.1e-70 271.2 341 40.5
TWI77G0983 Tripterygium wilfordii HOM05D004071 ORTHO05D004501 1.8e-70 270.4 338 42.9
BcaB04g21412 Brassica carinata HOM05D004071 ORTHO05D004501 4.1e-70 269.2 343 39.7
ClCG05G012000 Citrullus lanatus HOM05D004071 ORTHO05D004501 5.4e-70 268.9 338 38.5
Carub.0003s0151 Capsella rubella HOM05D004071 ORTHO05D004501 9.2e-70 268.1 342 39.5
BcaC09g47699 Brassica carinata HOM05D004071 ORTHO05D004501 1.2e-69 267.7 328 39.6
Potri.017G110600 Populus trichocarpa HOM05D004071 ORTHO05D004501 1.6e-69 267.3 339 39.2
AT3G02420 Arabidopsis thaliana HOM05D004071 ORTHO05D004501 2.7e-69 266.5 342 38.6
BraA05t23141Z Brassica rapa HOM05D004071 ORTHO05D004501 3.5e-69 266.2 336 39.0
Sp3g01460 Schrenkiella parvula HOM05D004071 ORTHO05D004501 4.5e-69 265.8 339 39.2
PGSC0003DMG400010091 Solanum tuberosum HOM05D004071 ORTHO05D004501 1.0e-68 264.6 343 39.7
Duzib133G0960 Durio zibethinus HOM05D004071 ORTHO05D004501 1.7e-68 263.8 339 40.1
Aa31LG5G12930 Aethionema arabicum HOM05D004071 ORTHO05D004501 2.9e-68 263.1 339 38.9
Actinidia36304 Actinidia chinensis HOM05D004071 ORTHO05D004501 5.0e-68 262.3 336 38.1
CSS0021599 Camellia sinensis var. sinensis HOM05D004071 ORTHO05D004501 1.9e-67 260.4 263 47.1
Thhalv10021061m.g Eutrema salsugineum HOM05D004071 ORTHO05D004501 2.5e-67 260.0 341 37.8
unitig_62.g23397 Utricularia gibba HOM05D004071 ORTHO05D004501 3.3e-67 259.6 340 39.4
AUR62014550 Chenopodium quinoa HOM05D004071 ORTHO05D004501 7.3e-67 258.5 341 38.7
CDE06G1497 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 9.5e-67 258.1 337 39.8
unitig_32.g10761 Utricularia gibba HOM05D004071 ORTHO05D004501 2.8e-66 256.5 338 37.9
Sed0014814 Sechium edule HOM05D004071 ORTHO05D004501 1.0e-65 254.6 336 37.5
Nn4g23653 Nelumbo nucifera HOM05D004071 ORTHO05D004501 1.4e-65 254.2 307 41.7
Hund16109 Selenicereus undatus HOM05D004071 ORTHO05D004501 1.4e-65 254.2 344 41.0
vmacro18101 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 6.8e-65 251.9 335 37.0
Nitab4.5_0004420g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.4e-64 249.6 343 36.7
PGR004G2426 Punica granatum HOM05D004071 ORTHO05D004501 3.7e-63 246.1 291 42.6
TAR371G1199 Trochodendron aralioides HOM05D004071 ORTHO05D004501 3.2e-62 243.0 294 41.5
Sabra04G0076900 Salix brachista HOM05D004071 ORTHO05D004501 9.2e-62 241.5 438 32.4
ATR0730G004 Amborella trichopoda HOM05D004071 ORTHO05D004501 3.0e-60 236.5 275 43.3
Glyma.19G043700 Glycine max HOM05D004071 ORTHO05D004501 2.0e-56 223.8 299 39.5
AL3G11710 Arabidopsis lyrata HOM05D004071 ORTHO05D004501 5.8e-56 222.2 292 39.0
vmacro05581 Vaccinium macrocarpon HOM05D004071 ORTHO05D004501 1.7e-55 220.7 425 31.8
BolC5t35082H Brassica oleracea HOM05D004071 ORTHO05D007018 3.7e-55 219.5 290 38.6
Eucgr.I02122 Eucalyptus grandis HOM05D004071 ORTHO05D004501 2.7e-53 213.4 241 43.6
Zm00001eb158750 Zea mays HOM05D004071 ORTHO05D004501 1.0e-52 211.5 265 39.6
Peaxi162Scf00479g00310 Petunia axillaris HOM05D004071 ORTHO05D004501 3.9e-52 209.5 294 37.8
Nitab4.5_0009272g0060 Nicotiana tabacum HOM05D004071 ORTHO05D004501 3.3e-51 206.5 351 33.3
Lj7A9T84 Lonicera japonica HOM05D004071 ORTHO05D004501 9.5e-51 204.9 219 47.0
Dinv33918 Davidia involucrata HOM05D004071 ORTHO05D004501 8.1e-50 201.8 185 49.2
Os01g0641700 Oryza sativa ssp. japonica HOM05D004071 ORTHO05D004501 8.1e-50 201.8 272 40.4
QL02p053393 Quercus lobata HOM05D004071 ORTHO05D004501 1.1e-49 201.4 244 42.2
C09p75710 Brassica napus HOM05D002308 ORTHO05D002535 1.4e-49 201.1 279 37.6
A05p45210 Brassica napus HOM05D002308 ORTHO05D007018 4.0e-49 199.5 277 37.2
Sc10g0001400 Simmondsia chinensis HOM05D004071 ORTHO05D004501 2.4e-46 190.3 233 40.3
Gohir.A13G091200 Gossypium hirsutum HOM05D004071 ORTHO05D004501 6.0e-45 185.7 231 40.3
arahy.Tifrunner.gnm1.ann1.2VHL38 Arachis hypogaea HOM05D004071 ORTHO05D004501 1.0e-44 184.9 238 42.0
DCAR_010977 Daucus carota HOM05D004071 ORTHO05D004501 9.6e-43 178.3 333 33.3
BraSC141t45626Z Brassica rapa HOM05D004071 ORTHO05D004501 3.6e-42 176.4 232 39.2
CDE05G2628 Ceratophyllum demersum HOM05D004071 ORTHO05D004501 6.2e-42 175.6 260 36.9
Nitab4.5_0000612g0160 Nicotiana tabacum HOM05D004071 ORTHO05D004501 2.6e-40 170.2 327 30.9
BNapus_Darmor_BZH_scaffold_208p00070 Brassica napus HOM05D004071 ORTHO05D004501 9.9e-40 168.3 233 37.3
BolC1t05906H Brassica oleracea HOM05D004071 ORTHO05D004501 8.4e-39 165.2 239 37.2
SHI25579 Sapria himalayana HOM05D004071 ORTHO05D004501 7.1e-38 162.2 269 36.4
TPR.G28780 Trifolium pratense HOM05D004071 ORTHO05D004501 5.1e-36 156.0 144 44.4
Nitab4.5_0003161g0040 Nicotiana tabacum HOM05D004071 ORTHO05D004501 9.0e-33 145.2 129 48.1
QL02p053385 Quercus lobata HOM05D004071 ORTHO05D004501 4.8e-26 122.9 105 51.4
Gohir.A03G111050 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.1e-25 121.7 120 42.5
PRCOL_00004263 Prasinoderma coloniale HOM05D068002 ORTHO05D004501 1.8e-25 120.9 407 25.6
CBR_g39496 Chara braunii HOM05D004071 ORTHO05D004501 1.3e-23 114.8 149 39.6
Gohir.A13G168300 Gossypium hirsutum HOM05D004071 ORTHO05D004501 2.4e-22 110.5 108 41.7
Gohir.A04G081800 Gossypium hirsutum HOM05D004071 ORTHO05D004501 3.2e-22 110.2 111 41.4
unitig_52.g17623 Utricularia gibba HOM05D004071 ORTHO05D004501 7.9e-21 105.5 127 40.2
Cre02.g099650 Chlamydomonas reinhardtii HOM05D004071 ORTHO05D004501 5.6e-19 99.4 215 28.4
Dinv33917 Davidia involucrata HOM05D004071 ORTHO05D004501 6.0e-13 79.3 103 39.8
Solyc02g089780.3 Solanum lycopersicum HOM05D004071 ORTHO05D004501 1.1e-11 75.1 62 46.8
Actinidia17620 Actinidia chinensis HOM05D004071 ORTHO05D004501 9.6e-11 72.0 70 44.3
SEGI_19153 Sequoiadendron giganteum HOM05D004071 ORTHO05D004501 1.6e-10 71.2 56 55.4
Gohir.A10G225466 Gossypium hirsutum HOM05D004071 ORTHO05D004501 1.4e-06 58.2 54 50.0


User provided reference genes

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