Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0102 Marchantia polymorpha HOM05D003793 ORTHO05D004471 4.7e-82 307.8 149 100.0
Mapoly0025s0046 Marchantia polymorpha HOM05D003793 ORTHO05D004471 7.5e-80 300.4 149 97.3
Mapoly0008s0048 Marchantia polymorpha HOM05D003793 ORTHO05D004471 2.2e-79 298.9 149 96.6
Mapoly0921s0001 Marchantia polymorpha HOM05D003793 ORTHO05D004471 1.2e-77 293.1 149 94.6
Pp3c11_23800 Physcomitrium patens HOM05D003793 ORTHO05D004471 9.8e-64 246.9 146 76.0
SEGI_24486 Sequoiadendron giganteum HOM05D003793 ORTHO05D004471 1.9e-59 232.6 149 71.1
AagrBONN_evm.TU.Sc2ySwM_362.1718 Anthoceros agrestis HOM05D003793 ORTHO05D004471 2.1e-58 229.2 149 68.5
Hund26874 Selenicereus undatus HOM05D003793 ORTHO05D004471 8.0e-58 227.3 146 70.5
Oeu001351.2 Olea europaea HOM05D003793 ORTHO05D004471 1.8e-57 226.1 146 69.2
Sc13g0011010 Simmondsia chinensis HOM05D003793 ORTHO05D004471 8.9e-57 223.8 146 67.1
Os02g0701600 Oryza sativa ssp. japonica HOM05D003793 ORTHO05D004471 3.4e-56 221.9 146 67.1
SMO145G0054 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 3.4e-56 221.9 147 70.7
Zm00001eb251860 Zea mays HOM05D003793 ORTHO05D004471 5.7e-56 221.1 146 67.8
Nn1g09155 Nelumbo nucifera HOM05D003793 ORTHO05D004471 7.5e-56 220.7 146 67.1
Migut.J00551 Erythranthe guttata HOM05D003793 ORTHO05D004471 1.3e-55 219.9 146 67.1
GSVIVG01024322001 Vitis vinifera HOM05D003793 ORTHO05D004471 1.7e-55 219.5 146 66.4
MSTRG.5738 Avicennia marina HOM05D003793 ORTHO05D004471 3.7e-55 218.4 146 65.8
ATR0829G208 Amborella trichopoda HOM05D003793 ORTHO05D004471 8.3e-55 217.2 146 67.8
Aqoxy6G01754 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 8.3e-55 217.2 146 66.4
Dinv29122 Davidia involucrata HOM05D003793 ORTHO05D004471 8.3e-55 217.2 146 66.4
Lsat_1_v5_gn_2_104420 Lactuca sativa HOM05D003793 ORTHO05D004471 8.3e-55 217.2 146 67.1
TAR375G0772 Trochodendron aralioides HOM05D003793 ORTHO05D004471 1.1e-54 216.9 146 66.4
EL10Ac3g05040 Beta vulgaris HOM05D003793 ORTHO05D004471 2.4e-54 215.7 146 67.1
Aqoxy6G01753 Aquilegia oxysepala HOM05D003793 ORTHO05D004471 3.2e-54 215.3 146 65.8
Ah.04g156140 Amaranthus hybridus HOM05D003793 ORTHO05D004471 4.1e-54 214.9 146 65.1
Cc11_g00040 Coffea canephora HOM05D003793 ORTHO05D004471 5.4e-54 214.5 146 65.1
Hma1.2p1_0419F.1_g149530 Hydrangea macrophylla HOM05D003793 ORTHO05D004471 5.4e-54 214.5 146 65.8
Lalb_Chr05g0211181 Lupinus albus HOM05D003793 ORTHO05D004471 5.4e-54 214.5 146 69.2
Rhsim09G0190300 Rhododendron simsii HOM05D003793 ORTHO05D004471 5.4e-54 214.5 146 67.1
AUR62028213 Chenopodium quinoa HOM05D003793 ORTHO05D004471 7.0e-54 214.2 146 65.8
PSO210G3154 Papaver somniferum HOM05D003793 ORTHO05D004471 7.0e-54 214.2 146 64.4
PSO210G3487 Papaver somniferum HOM05D003793 ORTHO05D004471 1.2e-53 213.4 146 64.4
Actinidia33800 Actinidia chinensis HOM05D003793 ORTHO05D004471 1.6e-53 213.0 146 65.8
CAN.G726.8 Capsicum annuum HOM05D003793 ORTHO05D004471 1.6e-53 213.0 146 65.1
Cpa.g.sc43.146 Carica papaya HOM05D003793 ORTHO05D004471 1.6e-53 213.0 146 67.1
Nitab4.5_0000411g0010 Nicotiana tabacum HOM05D003793 ORTHO05D004471 2.7e-53 212.2 146 65.1
TWI60G0578 Tripterygium wilfordii HOM05D003793 ORTHO05D004471 2.7e-53 212.2 146 65.8
SalBow3G1300 Salvia bowleyana HOM05D003793 ORTHO05D004471 3.5e-53 211.8 146 66.4
Phvul.011G017200 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 4.6e-53 211.5 146 67.1
unitig_578.g15801 Utricularia gibba HOM05D003793 ORTHO05D004471 4.6e-53 211.5 149 65.1
THA.LOC104821707 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 6.0e-53 211.1 146 65.8
HanXRQChr11g0342111 Helianthus annuus HOM05D003793 ORTHO05D004471 7.8e-53 210.7 146 64.4
VMungo1127G0200 Vigna mungo HOM05D003793 ORTHO05D004471 7.8e-53 210.7 146 66.4
QL09p020586 Quercus lobata HOM05D003793 ORTHO05D004471 1.0e-52 210.3 146 63.7
Solyc08g076360.4 Solanum lycopersicum HOM05D003793 ORTHO05D004471 1.3e-52 209.9 146 64.4
CiPaw.05G212400 Carya illinoinensis HOM05D003793 ORTHO05D004471 1.7e-52 209.5 146 65.8
Ciclev10005360m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.7e-52 209.5 146 65.8
Ciclev10032026m.g Citrus clementina HOM05D003793 ORTHO05D004471 1.7e-52 209.5 146 65.8
Phvul.011G017100 Phaseolus vulgaris HOM05D003793 ORTHO05D004471 1.7e-52 209.5 149 64.4
Atru.chr12.1860 Acer truncatum HOM05D003793 ORTHO05D004471 2.3e-52 209.1 146 65.1
vmacro22191 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 2.3e-52 209.1 146 64.4
Manes.08G160400 Manihot esculenta HOM05D003793 ORTHO05D004471 3.9e-52 208.4 146 66.4
VMungo1127G2010 Vigna mungo HOM05D003793 ORTHO05D004471 3.9e-52 208.4 149 64.4
Ca_13083_v3 Cicer arietinum L. HOM05D003793 ORTHO05D004471 5.0e-52 208.0 146 65.1
Glyma.09G222800 Glycine max HOM05D003793 ORTHO05D004471 1.1e-51 206.8 146 65.8
Lj3g0009427 Lotus japonicus HOM05D003793 ORTHO05D004471 1.1e-51 206.8 146 65.1
Potri.013G077000 Populus trichocarpa HOM05D003793 ORTHO05D004471 1.5e-51 206.5 146 65.1
Sabra13G0066000 Salix brachista HOM05D003793 ORTHO05D004471 1.5e-51 206.5 146 65.1
Lj3A883G46 Lonicera japonica HOM05D003793 ORTHO05D004471 1.9e-51 206.1 146 62.3
THA.LOC104805718 Tarenaya hassleriana HOM05D003793 ORTHO05D004471 1.9e-51 206.1 146 65.1
arahy.Tifrunner.gnm1.ann1.5NG4EY Arachis hypogaea HOM05D003793 ORTHO05D004471 2.5e-51 205.7 146 66.4
arahy.Tifrunner.gnm1.ann1.L925XS Arachis hypogaea HOM05D003793 ORTHO05D004471 2.5e-51 205.7 146 66.4
FvH4_6g17810 Fragaria vesca HOM05D003793 ORTHO05D004471 2.5e-51 205.7 146 61.6
FAN14G1236 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.5e-51 205.7 146 61.6
Glyma.12G014300 Glycine max HOM05D003793 ORTHO05D004471 2.5e-51 205.7 146 65.8
Duzib177G0459 Durio zibethinus HOM05D003793 ORTHO05D004471 3.3e-51 205.3 146 63.0
Gohir.A02G114300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 3.3e-51 205.3 146 63.7
Gorai.003G058100 Gossypium raimondii HOM05D003793 ORTHO05D004471 3.3e-51 205.3 146 63.7
FAN02G3282 Fragaria x ananassa HOM05D003793 ORTHO05D004471 4.3e-51 204.9 146 61.0
FAN05G0338 Fragaria x ananassa HOM05D003793 ORTHO05D004471 4.3e-51 204.9 146 61.0
arahy.Tifrunner.gnm1.ann1.SYC9J3 Arachis hypogaea HOM05D003793 ORTHO05D004471 5.6e-51 204.5 146 65.8
arahy.Tifrunner.gnm1.ann1.TXPN3Z Arachis hypogaea HOM05D003793 ORTHO05D004471 5.6e-51 204.5 146 65.8
RcHm_v2.0_Chr3g0472061 Rosa chinensis HOM05D003793 ORTHO05D004471 5.6e-51 204.5 146 61.6
Duzib106G1724 Durio zibethinus HOM05D003793 ORTHO05D004471 7.3e-51 204.1 146 62.3
Aa31LG2G2160 Aethionema arabicum HOM05D003793 ORTHO05D004471 9.5e-51 203.8 146 62.3
CsaV3_2G036010 Cucumis sativus L. HOM05D003793 ORTHO05D004471 9.5e-51 203.8 146 62.3
Gohir.D03G055300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 9.5e-51 203.8 146 63.0
Atru.chr12.1866 Acer truncatum HOM05D003793 ORTHO05D004471 1.2e-50 203.4 146 63.7
Glyma.12G014200 Glycine max HOM05D003793 ORTHO05D004471 2.1e-50 202.6 146 64.4
Thecc.05G223100 Theobroma cacao HOM05D003793 ORTHO05D004471 2.1e-50 202.6 146 61.0
Haze_00367 Corylus avellana HOM05D003793 ORTHO05D004471 2.8e-50 202.2 146 63.0
Gohir.D13G162300 Gossypium hirsutum HOM05D003793 ORTHO05D004471 3.6e-50 201.8 146 61.6
Gorai.013G184400 Gossypium raimondii HOM05D003793 ORTHO05D004471 3.6e-50 201.8 146 61.6
ClCG02G007700 Citrullus lanatus HOM05D003793 ORTHO05D004471 4.7e-50 201.4 146 63.0
MELO3C024736.2 Cucumis melo HOM05D003793 ORTHO05D004471 4.7e-50 201.4 146 62.3
Cfa016078 Carpinus fangiana HOM05D003793 ORTHO05D004471 6.2e-50 201.1 146 63.0
Psat6g024400 Pisum sativum HOM05D003793 ORTHO05D004471 8.0e-50 200.7 146 61.6
CDE11G0124 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.1e-49 200.3 146 62.3
Eucgr.K00068 Eucalyptus grandis HOM05D003793 ORTHO05D004471 1.4e-49 199.9 146 64.4
PGR142G3821 Punica granatum HOM05D003793 ORTHO05D004471 1.4e-49 199.9 146 61.6
HanXRQChr08g0217461 Helianthus annuus HOM05D003793 ORTHO05D004471 1.8e-49 199.5 146 58.9
HanXRQChr08g0217471 Helianthus annuus HOM05D003793 ORTHO05D004471 1.8e-49 199.5 146 58.9
HanXRQChr08g0217581 Helianthus annuus HOM05D003793 ORTHO05D004471 1.8e-49 199.5 146 58.9
Medtr1g014690 Medicago truncatula HOM05D003793 ORTHO05D004471 1.8e-49 199.5 146 61.6
A02p12940 Brassica napus HOM05D003793 ORTHO05D004471 2.3e-49 199.1 146 61.0
BraA02t06348Z Brassica rapa HOM05D003793 ORTHO05D004471 2.3e-49 199.1 146 61.0
ECA233G1952 Erigeron canadensis HOM05D003793 ORTHO05D004471 2.3e-49 199.1 146 60.3
Prupe.7G118300 Prunus persica HOM05D003793 ORTHO05D004471 2.3e-49 199.1 146 61.0
TPR.G38857 Trifolium pratense HOM05D003793 ORTHO05D004471 2.3e-49 199.1 146 61.6
CANSAT21G0915 Cannabis sativa HOM05D003793 ORTHO05D004471 3.1e-49 198.7 146 62.3
FAN09G3950 Fragaria x ananassa HOM05D003793 ORTHO05D004471 4.0e-49 198.4 143 60.1
CDE02G3720 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 5.2e-49 198.0 146 60.3
Nitab4.5_0004045g0040 Nicotiana tabacum HOM05D003793 ORTHO05D004471 5.2e-49 198.0 175 55.4
Carub.0002s1011 Capsella rubella HOM05D003793 ORTHO05D004471 8.9e-49 197.2 146 61.0
CDE12G0793 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 8.9e-49 197.2 146 61.0
Sp5g19260 Schrenkiella parvula HOM05D003793 ORTHO05D004471 1.2e-48 196.8 146 60.3
BcaC03g16025 Brassica carinata HOM05D003793 ORTHO05D004471 1.5e-48 196.4 146 60.3
C02p37750 Brassica napus HOM05D003793 ORTHO05D004471 1.5e-48 196.4 146 60.3
BolC2t09793H Brassica oleracea HOM05D003793 ORTHO05D004471 1.5e-48 196.4 146 60.3
BcaB05g24071 Brassica carinata HOM05D003793 ORTHO05D004471 2.0e-48 196.1 146 60.3
BcaC03g14668 Brassica carinata HOM05D003793 ORTHO05D004471 2.0e-48 196.1 146 60.3
C02p21050 Brassica napus HOM05D003793 ORTHO05D004471 2.0e-48 196.1 146 60.3
BolC2t08246H Brassica oleracea HOM05D003793 ORTHO05D004471 2.0e-48 196.1 146 60.3
CDE01G0103 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 2.0e-48 196.1 146 59.6
Sed0025175 Sechium edule HOM05D003793 ORTHO05D004471 2.0e-48 196.1 146 61.0
BraA02t07388Z Brassica rapa HOM05D003793 ORTHO05D004471 3.4e-48 195.3 146 59.6
HPP92_022760 Vanilla planifolia HOM05D003793 ORTHO05D004471 3.4e-48 195.3 146 59.6
A02p23940 Brassica napus HOM05D003793 ORTHO05D004471 4.4e-48 194.9 146 59.6
AT1G64970 Arabidopsis thaliana HOM05D003793 ORTHO05D004471 9.8e-48 193.7 146 59.6
Cre09.g393400 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 9.8e-48 193.7 146 59.6
Thhalv10018768m.g Eutrema salsugineum HOM05D003793 ORTHO05D004471 9.8e-48 193.7 146 58.9
HPP92_027670 Vanilla planifolia HOM05D003793 ORTHO05D004471 1.3e-47 193.4 146 59.6
MD12G1017400 Malus domestica HOM05D003793 ORTHO05D004471 1.7e-47 193.0 146 58.9
Duzib177G0347 Durio zibethinus HOM05D003793 ORTHO05D004471 2.9e-47 192.2 146 60.3
Aa31LG2G2170 Aethionema arabicum HOM05D003793 ORTHO05D004471 3.7e-47 191.8 146 58.2
AL2G19520 Arabidopsis lyrata HOM05D003793 ORTHO05D004471 4.9e-47 191.4 146 58.2
CARHR056370 Cardamine hirsuta HOM05D003793 ORTHO05D004471 4.9e-47 191.4 146 58.2
MD14G1015100 Malus domestica HOM05D003793 ORTHO05D004471 6.4e-47 191.0 146 58.2
Actinidia34215 Actinidia chinensis HOM05D003793 ORTHO05D004471 1.1e-46 190.3 139 62.6
Nitab4.5_0001475g0030 Nicotiana tabacum HOM05D003793 ORTHO05D004471 1.4e-46 189.9 172 54.1
CBR_g28039 Chara braunii HOM05D003793 ORTHO05D004471 2.0e-45 186.0 133 62.4
ATR0829G050 Amborella trichopoda HOM05D003793 ORTHO05D004471 3.5e-45 185.3 146 52.7
MCO16G568 Micromonas commoda HOM05D003793 ORTHO05D004471 7.8e-45 184.1 146 58.2
Lsat_1_v5_gn_8_24121 Lactuca sativa HOM05D003793 ORTHO05D004471 3.0e-44 182.2 134 59.0
Hund00468 Selenicereus undatus HOM05D003793 ORTHO05D004471 1.4e-41 173.3 146 55.5
Nn3g21149 Nelumbo nucifera HOM05D003793 ORTHO05D004471 2.3e-41 172.6 146 53.4
vmacro09916 Vaccinium macrocarpon HOM05D003793 ORTHO05D004471 5.2e-41 171.4 115 66.1
FAN05G4652 Fragaria x ananassa HOM05D003793 ORTHO05D004471 2.0e-40 169.5 115 62.6
QL09p020551 Quercus lobata HOM05D003793 ORTHO05D004471 4.4e-40 168.3 115 63.5
COL.COLO4_15127 Corchorus olitorius HOM05D003793 ORTHO05D004471 1.7e-39 166.4 115 63.5
SalBow3G2252 Salvia bowleyana HOM05D003793 ORTHO05D004471 1.7e-39 166.4 115 65.2
SGA_v2.0_scaffold126G33927 Striga asiatica HOM05D003793 ORTHO05D004471 2.9e-39 165.6 113 64.6
Gohir.A13G157500 Gossypium hirsutum HOM05D003793 ORTHO05D004471 8.3e-39 164.1 115 61.7
CDE11G0369 Ceratophyllum demersum HOM05D003793 ORTHO05D004471 1.6e-37 159.8 115 61.7
PGR142G3948 Punica granatum HOM05D003793 ORTHO05D004471 6.2e-34 147.9 147 48.3
PGR142G4176 Punica granatum HOM05D003793 ORTHO05D004471 2.4e-33 146.0 147 48.3
AUR62002095 Chenopodium quinoa HOM05D003793 ORTHO05D004471 8.9e-33 144.1 95 66.3
SMO351G0374 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 7.6e-32 141.0 150 40.7
SMO119G0172 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 4.9e-31 138.3 150 40.0
SMO115G0333 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 6.4e-31 137.9 150 39.3
Oeu027984.2 Olea europaea HOM05D003793 ORTHO05D004471 4.6e-29 131.7 80 71.2
Rhsim09G0214000 Rhododendron simsii HOM05D003793 ORTHO05D004471 6.6e-28 127.9 85 65.9
SMO119G0398 Selaginella moellendorffii HOM05D003793 ORTHO05D004471 1.1e-27 127.1 150 36.7
PGR142G2095 Punica granatum HOM05D003793 ORTHO05D004471 2.0e-24 116.3 108 50.9
HPP92_027662 Vanilla planifolia HOM05D003793 ORTHO05D004471 2.0e-24 116.3 80 63.8
ECA238G4812 Erigeron canadensis HOM05D003793 ORTHO05D004471 1.4e-22 110.2 115 48.7
LjContig00408g0002790 Lotus japonicus HOM05D003793 ORTHO05D004471 1.9e-22 109.8 110 50.9
Cc06_g18710 Coffea canephora HOM05D003793 ORTHO05D004471 2.4e-22 109.4 143 38.5
arahy.Tifrunner.gnm1.ann1.DIJP1R Arachis hypogaea HOM05D003793 ORTHO05D004471 6.6e-20 101.3 69 65.2
Cc06_g18700 Coffea canephora HOM05D003793 ORTHO05D004471 8.7e-20 100.9 148 33.8
Cc06_g18750 Coffea canephora HOM05D003793 ORTHO05D004471 9.6e-19 97.4 141 34.8
Peaxi162Scf00052g00016 Petunia axillaris HOM05D003793 ORTHO05D004471 9.6e-19 97.4 86 51.2
MCO15G681 Micromonas commoda HOM05D003793 ORTHO05D004471 4.9e-15 85.1 147 29.3
Hund00469 Selenicereus undatus HOM05D003793 ORTHO05D004471 4.9e-15 85.1 61 63.9
Cre14.g624350 Chlamydomonas reinhardtii HOM05D003793 ORTHO05D004471 5.4e-14 81.6 148 29.1
arahy.Tifrunner.gnm1.ann1.V58P3M Arachis hypogaea HOM05D003793 ORTHO05D004471 1.8e-12 76.6 46 73.9
PRCOL_00002005 Prasinoderma coloniale HOM05D003793 ORTHO05D004471 1.8e-12 76.6 156 30.1
MCO13G309 Micromonas commoda HOM05D003793 ORTHO05D004471 2.1e-10 69.7 148 27.7


User provided reference genes

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