Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0098 Marchantia polymorpha HOM05D006099 ORTHO05D007317 4.0e-187 657.9 325 100.0
Pp3c6_10670 Physcomitrium patens HOM05D006099 ORTHO05D007317 7.3e-88 328.2 255 61.6
AagrBONN_evm.TU.Sc2ySwM_228.1579 Anthoceros agrestis HOM05D006099 ORTHO05D007317 5.2e-86 322.0 262 60.7
FvH4_2g30570 Fragaria vesca HOM05D006099 ORTHO05D007317 2.8e-79 299.7 276 54.3
Cfa013234 Carpinus fangiana HOM05D006099 ORTHO05D007317 3.6e-79 299.3 278 56.5
Nn4g25135 Nelumbo nucifera HOM05D006099 ORTHO05D007317 1.1e-78 297.7 249 59.4
ATR0626G128 Amborella trichopoda HOM05D006099 ORTHO05D007317 5.2e-78 295.4 255 55.3
CANSAT25G1623 Cannabis sativa HOM05D006099 ORTHO05D007317 6.8e-78 295.0 252 60.3
Solyc12g096280.2 Solanum lycopersicum HOM05D006099 ORTHO05D007317 8.9e-78 294.7 263 58.2
Lalb_Chr24g0402361 Lupinus albus HOM05D006099 ORTHO05D007317 2.6e-77 293.1 281 52.3
Phvul.001G057000 Phaseolus vulgaris HOM05D006099 ORTHO05D007317 4.4e-77 292.4 251 55.4
CAN.G947.18 Capsicum annuum HOM05D006099 ORTHO05D007317 7.6e-77 291.6 251 59.8
Nitab4.5_0001159g0110 Nicotiana tabacum HOM05D006099 ORTHO05D007317 1.3e-76 290.8 281 55.2
THA.LOC104803891 Tarenaya hassleriana HOM05D006099 ORTHO05D007317 1.3e-76 290.8 249 55.8
MD08G1132300 Malus domestica HOM05D006099 ORTHO05D007317 2.2e-76 290.0 249 57.0
Sopen12g032140 Solanum pennellii HOM05D006099 ORTHO05D007317 2.2e-76 290.0 273 56.4
CSS0009505 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 2.9e-76 289.7 250 58.0
CiPaw.07G216100 Carya illinoinensis HOM05D006099 ORTHO05D007317 3.8e-76 289.3 244 61.1
VMungo0647G0711 Vigna mungo HOM05D006099 ORTHO05D007317 4.9e-76 288.9 251 55.4
SMO351G0465 Selaginella moellendorffii HOM05D006099 ORTHO05D007317 1.1e-75 287.7 257 54.1
arahy.Tifrunner.gnm1.ann1.AEW87R Arachis hypogaea HOM05D006099 ORTHO05D007317 2.4e-75 286.6 259 54.1
Ca_27927_v3 Cicer arietinum L. HOM05D006099 ORTHO05D007317 2.4e-75 286.6 255 53.7
Ciclev10009104m.g Citrus clementina HOM05D006099 ORTHO05D007317 2.4e-75 286.6 255 54.5
Gohir.A05G066400 Gossypium hirsutum HOM05D006099 ORTHO05D007317 2.4e-75 286.6 254 55.5
Gohir.D05G068900 Gossypium hirsutum HOM05D006099 ORTHO05D007317 7.1e-75 285.0 254 55.5
Gorai.009G069800 Gossypium raimondii HOM05D006099 ORTHO05D007317 7.1e-75 285.0 254 55.5
Zm00001eb274410 Zea mays HOM05D006099 ORTHO05D007317 7.1e-75 285.0 254 57.1
Dinv37480 Davidia involucrata HOM05D006099 ORTHO05D007317 1.6e-74 283.9 254 57.1
Lj5g0025000 Lotus japonicus HOM05D006099 ORTHO05D007317 1.3e-73 280.8 249 54.2
Lj7A751T33 Lonicera japonica HOM05D006099 ORTHO05D007317 3.0e-73 279.6 259 56.0
Medtr1g010130 Medicago truncatula HOM05D006099 ORTHO05D007317 3.9e-73 279.3 249 54.2
Actinidia03572 Actinidia chinensis HOM05D006099 ORTHO05D007317 8.6e-73 278.1 249 55.0
ECA240G1547 Erigeron canadensis HOM05D006099 ORTHO05D007317 8.6e-73 278.1 249 54.2
Cc00_g12770 Coffea canephora HOM05D006099 ORTHO05D007317 2.5e-72 276.6 270 53.3
Sed0006978 Sechium edule HOM05D006099 ORTHO05D007317 3.3e-72 276.2 249 54.6
Rhsim07G0173500 Rhododendron simsii HOM05D006099 ORTHO05D007317 4.3e-72 275.8 284 50.4
arahy.Tifrunner.gnm1.ann1.ZJIP4K Arachis hypogaea HOM05D006099 ORTHO05D007317 9.6e-72 274.6 246 53.3
Thhalv10025966m.g Eutrema salsugineum HOM05D006099 ORTHO05D007317 1.2e-71 274.2 249 54.6
AL7G20920 Arabidopsis lyrata HOM05D006099 ORTHO05D007317 1.6e-71 273.9 249 53.4
AT4G31150 Arabidopsis thaliana HOM05D006099 ORTHO05D007317 2.1e-71 273.5 249 53.8
GSVIVG01035588001 Vitis vinifera HOM05D006099 ORTHO05D007317 2.1e-71 273.5 256 55.1
FAN27G0146 Fragaria x ananassa HOM05D006099 ORTHO05D007317 3.6e-71 272.7 291 48.1
Manes.15G141200 Manihot esculenta HOM05D006099 ORTHO05D007317 6.2e-71 271.9 252 54.0
Carub.0007s0938 Capsella rubella HOM05D006099 ORTHO05D007317 8.1e-71 271.6 245 54.7
PGR142G3206 Punica granatum HOM05D006099 ORTHO05D007317 8.1e-71 271.6 259 54.4
Glyma.14G131200 Glycine max HOM05D006099 ORTHO05D007317 1.1e-70 271.2 238 55.0
PGSC0003DMG400029284 Solanum tuberosum HOM05D006099 ORTHO05D007317 1.1e-70 271.2 249 57.4
Hma1.2p1_1615F.1_g293710 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 1.4e-70 270.8 237 54.9
Sp7g29030 Schrenkiella parvula HOM05D006099 ORTHO05D007317 1.4e-70 270.8 249 54.2
HanXRQChr13g0419861 Helianthus annuus HOM05D006099 ORTHO05D007317 1.8e-70 270.4 267 50.6
BolC3t21124H Brassica oleracea HOM05D006099 ORTHO05D007317 3.1e-70 269.6 249 52.6
C03p88160 Brassica napus HOM05D006099 ORTHO05D007317 4.0e-70 269.2 249 52.2
Potri.018G001000 Populus trichocarpa HOM05D006099 ORTHO05D007317 6.9e-70 268.5 265 52.5
BraA08t33839Z Brassica rapa HOM05D006099 ORTHO05D007317 8.9e-70 268.1 249 52.6
FAN15G2948 Fragaria x ananassa HOM05D006099 ORTHO05D007317 8.9e-70 268.1 285 48.8
AUR62020668 Chenopodium quinoa HOM05D006099 ORTHO05D007317 1.2e-69 267.7 258 53.9
QL12p030693 Quercus lobata HOM05D006099 ORTHO05D007317 1.5e-69 267.3 234 58.5
CsaV3_2G031500 Cucumis sativus L. HOM05D006099 ORTHO05D007317 9.9e-69 264.6 249 53.4
Duzib168G0660 Durio zibethinus HOM05D006099 ORTHO05D007317 9.9e-69 264.6 272 49.3
PSO170G3285 Papaver somniferum HOM05D006099 ORTHO05D007317 1.3e-68 264.2 259 52.9
Thecc.09G001300 Theobroma cacao HOM05D006099 ORTHO05D007317 1.3e-68 264.2 244 53.3
Manes.15G141100 Manihot esculenta HOM05D006099 ORTHO05D007317 4.9e-68 262.3 246 54.5
Lsat_1_v5_gn_3_111601 Lactuca sativa HOM05D006099 ORTHO05D007317 8.4e-68 261.5 258 50.0
Aa31LG2G19160 Aethionema arabicum HOM05D006099 ORTHO05D007317 5.4e-67 258.8 249 52.2
QL12p030880 Quercus lobata HOM05D006099 ORTHO05D007317 5.4e-67 258.8 259 54.8
Atru.chr7.2710 Acer truncatum HOM05D006099 ORTHO05D007317 1.6e-66 257.3 249 50.6
Sc23g0004430 Simmondsia chinensis HOM05D006099 ORTHO05D007317 2.1e-66 256.9 284 49.6
ClCG08G012820 Citrullus lanatus HOM05D006099 ORTHO05D007317 2.7e-66 256.5 260 51.5
SGA_v2.0_scaffold27G11694 Striga asiatica HOM05D006099 ORTHO05D007317 3.5e-66 256.1 280 50.7
A08p18780 Brassica napus HOM05D006099 ORTHO05D007317 1.0e-65 254.6 273 48.0
Oeu035175.2 Olea europaea HOM05D006099 ORTHO05D007317 1.7e-65 253.8 247 53.8
MELO3C011207.2 Cucumis melo HOM05D006099 ORTHO05D007317 1.1e-64 251.1 246 51.6
CBR_g34340 Chara braunii HOM05D006099 ORTHO05D007317 1.3e-63 247.7 207 57.5
BcaB03g12683 Brassica carinata HOM05D006099 ORTHO05D007317 2.8e-63 246.5 232 52.2
Haze_21663 Corylus avellana HOM05D006099 ORTHO05D007317 6.9e-62 241.9 241 53.9
RcHm_v2.0_Chr6g0312441 Rosa chinensis HOM05D006099 ORTHO05D007317 4.5e-61 239.2 251 51.0
DCAR_000694 Daucus carota HOM05D006099 ORTHO05D007317 1.7e-60 237.3 260 49.6
Eucgr.C02144 Eucalyptus grandis HOM05D006099 ORTHO05D007317 1.9e-59 233.8 259 48.6
Sabra18G0005300 Salix brachista HOM05D002037 ORTHO05D002762 2.4e-59 233.4 295 46.4
Hund03250 Selenicereus undatus HOM05D006099 ORTHO05D007317 9.3e-59 231.5 242 50.0
EL10Ac2g03669 Beta vulgaris HOM05D006099 ORTHO05D007317 1.6e-58 230.7 247 50.6
SalBow4G2099 Salvia bowleyana HOM05D006099 ORTHO05D007317 1.5e-56 224.2 237 50.6
CSS0007227 Camellia sinensis var. sinensis HOM05D006099 ORTHO05D007317 9.6e-56 221.5 197 56.9
MBI16_g00820_MAGBIO Magnolia biondii HOM05D006099 ORTHO05D007317 1.3e-55 221.1 299 42.1
TWI32G0633 Tripterygium wilfordii HOM05D006099 ORTHO05D007317 2.8e-55 219.9 206 51.9
AUR62028064 Chenopodium quinoa HOM05D006099 ORTHO05D007317 3.1e-54 216.5 387 35.9
Cpa.g.sc148.13 Carica papaya HOM05D006099 ORTHO05D007317 4.0e-54 216.1 197 51.8
FAN24G0140 Fragaria x ananassa HOM05D006099 ORTHO05D007317 5.3e-54 215.7 206 54.4
PSO063G7181 Papaver somniferum HOM05D006099 ORTHO05D007317 6.9e-54 215.3 203 54.7
Os06g0663600 Oryza sativa ssp. japonica HOM05D006099 ORTHO05D007317 2.1e-50 203.8 161 60.9
FAN20G1258 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.4e-48 195.3 284 40.8
FAN20G1767 Fragaria x ananassa HOM05D006099 ORTHO05D007317 7.4e-48 195.3 284 40.8
Hma1.2p1_1615F.1_g293700 Hydrangea macrophylla HOM05D006099 ORTHO05D007317 3.7e-47 193.0 220 44.1
Zm00001eb274500 Zea mays HOM05D006099 ORTHO05D007317 3.1e-46 189.9 172 55.2
HPP92_011639 Vanilla planifolia HOM05D006099 ORTHO05D007317 5.3e-46 189.1 171 56.7
HanXRQChr13g0419831 Helianthus annuus HOM05D006099 ORTHO05D007317 2.6e-45 186.8 173 55.5
Ah.11g044160 Amaranthus hybridus HOM05D006099 ORTHO05D007317 3.4e-45 186.4 150 61.3
Zm00001eb274550 Zea mays HOM05D006099 ORTHO05D007317 2.2e-44 183.7 163 57.1
CDE06G2693 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 7.9e-42 175.3 210 43.3
Sc23g0004790 Simmondsia chinensis HOM05D006099 ORTHO05D007317 7.9e-42 175.3 254 42.1
Zm00001eb442290 Zea mays HOM05D006099 ORTHO05D007317 2.8e-39 166.8 124 62.9
Peaxi162Scf00876g00025 Petunia axillaris HOM05D006099 ORTHO05D007317 4.5e-37 159.5 244 40.2
MCO10G112 Micromonas commoda HOM05D006099 ORTHO05D007317 1.7e-36 157.5 309 35.3
RcHm_v2.0_Chr6g0312501 Rosa chinensis HOM05D006099 ORTHO05D007317 1.1e-35 154.8 187 48.1
unitig_32.g10951 Utricularia gibba HOM05D006099 ORTHO05D007317 1.9e-35 154.1 125 60.0
vmacro05090 Vaccinium macrocarpon HOM05D006099 ORTHO05D007317 4.6e-34 149.4 141 52.5
Psat6g031520 Pisum sativum HOM05D006099 ORTHO05D007317 1.0e-33 148.3 136 54.4
BcaC08g44050 Brassica carinata HOM05D006099 ORTHO05D007317 1.6e-31 141.0 136 49.3
BolC6t36631H Brassica oleracea HOM05D006099 ORTHO05D007317 1.6e-31 141.0 136 49.3
Cre07.g346100 Chlamydomonas reinhardtii HOM05D006099 ORTHO05D007317 1.1e-30 138.3 287 32.8
BcaC04g20481 Brassica carinata HOM05D006099 ORTHO05D007317 2.4e-30 137.1 136 48.5
C09p43040 Brassica napus HOM05D006099 ORTHO05D007317 2.4e-30 137.1 136 48.5
Migut.A00464 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.0e-29 134.0 130 52.3
CARHR239060 Cardamine hirsuta HOM05D006099 ORTHO05D007317 3.4e-29 133.3 114 54.4
C03p41630 Brassica napus HOM05D006099 ORTHO05D007317 1.9e-27 127.5 133 45.9
Prupe.1G463600 Prunus persica HOM05D006099 ORTHO05D007317 1.9e-27 127.5 150 44.7
Nitab4.5_0001327g0030 Nicotiana tabacum HOM05D006099 ORTHO05D007317 4.6e-26 122.9 122 55.7
TAR626G0599 Trochodendron aralioides HOM05D006099 ORTHO05D007317 9.7e-24 115.2 240 32.9
TPR.G26527 Trifolium pratense HOM05D006099 ORTHO05D007317 6.9e-22 109.0 131 45.8
Zm00001eb274520 Zea mays HOM05D006099 ORTHO05D007317 2.0e-21 107.5 105 52.4
SHI15001 Sapria himalayana HOM05D006099 ORTHO05D007317 1.7e-20 104.4 106 50.9
unitig_32.g10950 Utricularia gibba HOM05D006099 ORTHO05D007317 1.7e-20 104.4 99 55.6
Migut.A00463 Erythranthe guttata HOM05D006099 ORTHO05D007317 2.2e-20 104.0 111 48.6
MSTRG.11825 Avicennia marina HOM05D006099 ORTHO05D007317 3.8e-20 103.2 144 43.1
TPR.G30957 Trifolium pratense HOM05D006099 ORTHO05D007317 5.5e-19 99.4 89 53.9
HPP92_011638 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.2e-18 98.2 71 63.4
HPP92_011640 Vanilla planifolia HOM05D006099 ORTHO05D007317 1.1e-16 91.7 76 56.6
TPR.G3995 Trifolium pratense HOM05D006099 ORTHO05D007317 2.0e-16 90.9 56 73.2
SHI15000 Sapria himalayana HOM05D000105 ORTHO05D000023 1.2e-13 81.6 103 47.6
CDE08G0278 Ceratophyllum demersum HOM05D006099 ORTHO05D007317 5.9e-13 79.3 74 50.0
QL02p066379 Quercus lobata HOM05D006099 ORTHO05D007317 8.0e-10 68.9 61 52.5


User provided reference genes

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