Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0047 Marchantia polymorpha HOM05D004844 ORTHO05D006036 0.0e+00 1560.0 923 100.0
Pp3c13_7740 Physcomitrium patens HOM05D004844 ORTHO05D006036 7.6e-223 778.1 978 51.5
AagrBONN_evm.TU.Sc2ySwM_228.4292 Anthoceros agrestis HOM05D004844 ORTHO05D006036 2.5e-218 763.1 961 53.5
TAR627G0787 Trochodendron aralioides HOM05D004844 ORTHO05D006036 2.4e-192 676.8 955 46.9
Cfa008853 Carpinus fangiana HOM05D004844 ORTHO05D006036 1.6e-185 654.1 967 44.3
Nn4g23518 Nelumbo nucifera HOM05D004844 ORTHO05D006036 2.1e-185 653.7 967 46.8
Cc11_g11690 Coffea canephora HOM05D004844 ORTHO05D006036 4.5e-183 646.0 922 44.8
MBI19_g00156_MAGBIO Magnolia biondii HOM05D004844 ORTHO05D006036 7.9e-180 635.2 1078 42.1
Ciclev10030646m.g Citrus clementina HOM05D004844 ORTHO05D006036 3.0e-179 633.3 960 47.7
Medtr1g442830 Medicago truncatula HOM05D004844 ORTHO05D006036 6.7e-179 632.1 957 45.5
CANSAT64G2735 Cannabis sativa HOM05D004844 ORTHO05D006036 8.7e-179 631.7 963 44.8
TWI79G0207 Tripterygium wilfordii HOM05D004844 ORTHO05D006036 1.9e-178 630.6 954 45.1
Manes.17G024283 Manihot esculenta HOM05D004844 ORTHO05D006036 5.7e-178 629.0 959 44.7
Aqoxy3G03719 Aquilegia oxysepala HOM05D004844 ORTHO05D006036 1.6e-177 627.5 955 44.7
GSVIVG01012255001 Vitis vinifera HOM05D004844 ORTHO05D006036 1.6e-177 627.5 908 44.3
Glyma.02G003100 Glycine max HOM05D004844 ORTHO05D006036 8.2e-177 625.2 976 43.9
Thecc.02G325500 Theobroma cacao HOM05D004844 ORTHO05D006036 8.2e-177 625.2 953 43.8
PGR102G1068 Punica granatum HOM05D004844 ORTHO05D006036 3.1e-176 623.2 974 45.8
CAN.G1021.26 Capsicum annuum HOM05D004844 ORTHO05D006036 5.3e-176 622.5 952 44.9
Medtr1g064300 Medicago truncatula HOM05D004844 ORTHO05D006036 1.2e-175 621.3 948 45.0
MSTRG.13461 Avicennia marina HOM05D004844 ORTHO05D006036 2.6e-175 620.2 950 44.6
PGSC0003DMG400028356 Solanum tuberosum HOM05D004844 ORTHO05D006036 2.6e-175 620.2 922 44.3
COL.COLO4_27840 Corchorus olitorius HOM05D004844 ORTHO05D006036 2.2e-174 617.1 979 42.7
Cpa.g.sc1.164 Carica papaya HOM05D004844 ORTHO05D006036 2.9e-174 616.7 966 44.5
Sopen05g006740 Solanum pennellii HOM05D004844 ORTHO05D006036 8.5e-174 615.1 922 44.3
Solyc05g011990.4 Solanum lycopersicum HOM05D004844 ORTHO05D006036 1.1e-173 614.8 922 44.4
Eucgr.B03138 Eucalyptus grandis HOM05D004844 ORTHO05D006036 1.9e-173 614.0 971 46.1
Potri.010G140100 Populus trichocarpa HOM05D004844 ORTHO05D006036 1.9e-173 614.0 934 46.4
Sabra10G0108200 Salix brachista HOM05D004844 ORTHO05D006036 1.9e-173 614.0 953 42.2
Os03g0598200 Oryza sativa ssp. japonica HOM05D004844 ORTHO05D006036 4.2e-173 612.8 927 46.9
Psat1g047040 Pisum sativum HOM05D004844 ORTHO05D006036 7.2e-173 612.1 955 45.8
DCAR_022184 Daucus carota HOM05D004844 ORTHO05D006036 9.4e-173 611.7 899 43.7
Lalb_Chr25g0284481 Lupinus albus HOM05D004844 ORTHO05D006036 9.4e-173 611.7 926 47.9
CSS0013036 Camellia sinensis var. sinensis HOM05D004844 ORTHO05D006036 1.2e-172 611.3 933 45.2
Sc04g0007400 Simmondsia chinensis HOM05D004844 ORTHO05D006036 2.1e-172 610.5 965 45.1
SGA_v2.0_scaffold287G47183 Striga asiatica HOM05D004844 ORTHO05D006036 6.1e-172 609.0 982 42.4
Glyma.10G005700 Glycine max HOM05D004844 ORTHO05D006036 7.9e-172 608.6 978 46.1
Lj6g0000403 Lotus japonicus HOM05D004844 ORTHO05D006036 3.9e-171 606.3 956 46.8
Phvul.007G274500 Phaseolus vulgaris HOM05D004844 ORTHO05D006036 1.1e-170 604.7 933 43.7
Nitab4.5_0000027g0110 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.0e-170 604.0 949 45.6
Nitab4.5_0011617g0010 Nicotiana tabacum HOM05D004844 ORTHO05D006036 5.7e-170 602.4 931 44.1
VMungo0720G2226 Vigna mungo HOM05D004844 ORTHO05D006036 5.7e-170 602.4 940 45.6
Gohir.A04G145600 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.3e-169 599.0 967 42.3
Gohir.D04G190100 Gossypium hirsutum HOM05D004844 ORTHO05D006036 6.3e-169 599.0 964 42.0
Gorai.012G185400 Gossypium raimondii HOM05D004844 ORTHO05D006036 8.2e-169 598.6 966 42.8
Ca_12009_v3 Cicer arietinum L. HOM05D004844 ORTHO05D006036 3.4e-167 593.2 937 45.0
AUR62007885 Chenopodium quinoa HOM05D004844 ORTHO05D006036 4.5e-167 592.8 917 42.9
AUR62003071 Chenopodium quinoa HOM05D004844 ORTHO05D006036 1.3e-166 591.3 942 42.1
CsaV3_6G033830 Cucumis sativus L. HOM05D004844 ORTHO05D006036 1.7e-166 590.9 934 45.7
Zm00001eb049910 Zea mays HOM05D004844 ORTHO05D006036 2.9e-166 590.1 944 45.2
Ah.03g138670 Amaranthus hybridus HOM05D004844 ORTHO05D006036 3.8e-166 589.7 958 42.5
Dinv20143 Davidia involucrata HOM05D004844 ORTHO05D006036 2.5e-165 587.0 849 48.4
CDE10G1236 Ceratophyllum demersum HOM05D004844 ORTHO05D006036 3.2e-165 586.6 925 41.7
Migut.E00244 Erythranthe guttata HOM05D004844 ORTHO05D006036 7.2e-165 585.5 960 43.9
Aa31LG7G8740 Aethionema arabicum HOM05D004844 ORTHO05D006036 1.6e-164 584.3 924 41.8
ATR0827G008 Amborella trichopoda HOM05D004844 ORTHO05D006036 2.3e-163 580.5 859 43.7
Rhsim12G0073500 Rhododendron simsii HOM05D004844 ORTHO05D006036 2.3e-163 580.5 962 41.6
PSO782G4088 Papaver somniferum HOM05D004844 ORTHO05D006036 6.7e-163 578.9 960 42.0
SalBow4G3252 Salvia bowleyana HOM05D004844 ORTHO05D006036 6.7e-163 578.9 1032 41.8
MD16G1058200 Malus domestica HOM05D004844 ORTHO05D006036 1.5e-162 577.8 922 41.2
arahy.Tifrunner.gnm1.ann1.Q1MRHA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.0e-162 577.4 944 44.7
ClCG08G010550 Citrullus lanatus HOM05D004844 ORTHO05D006036 4.4e-162 576.2 944 44.9
ECA233G1780 Erigeron canadensis HOM05D004844 ORTHO05D006036 1.3e-161 574.7 917 45.0
Sed0010809 Sechium edule HOM05D004844 ORTHO05D006036 1.3e-161 574.7 924 45.5
PSO063G4789 Papaver somniferum HOM05D004844 ORTHO05D006036 1.7e-161 574.3 955 41.9
MELO3C011408.2 Cucumis melo HOM05D004844 ORTHO05D006036 3.7e-161 573.2 934 42.8
Thhalv10018096m.g Eutrema salsugineum HOM05D004844 ORTHO05D006036 8.2e-161 572.0 954 41.4
Duzib251G0783 Durio zibethinus HOM05D004844 ORTHO05D006036 1.1e-160 571.6 939 42.9
THA.LOC104821991 Tarenaya hassleriana HOM05D004844 ORTHO05D006036 1.4e-160 571.2 962 41.0
HanXRQChr06g0168931 Helianthus annuus HOM05D004844 ORTHO05D006036 7.0e-160 568.9 933 43.4
arahy.Tifrunner.gnm1.ann1.H7MRPA Arachis hypogaea HOM05D004844 ORTHO05D006036 2.2e-158 563.9 971 43.7
arahy.Tifrunner.gnm1.ann1.79UB1D Arachis hypogaea HOM05D004844 ORTHO05D006036 5.0e-158 562.8 977 41.4
Actinidia19906 Actinidia chinensis HOM05D004844 ORTHO05D006036 8.5e-158 562.0 854 44.7
Prupe.1G290900 Prunus persica HOM05D004844 ORTHO05D006036 1.5e-157 561.2 922 42.1
Sp5g24170 Schrenkiella parvula HOM05D004844 ORTHO05D006036 1.9e-157 560.8 926 42.3
Peaxi162Scf00175g00927 Petunia axillaris HOM05D004844 ORTHO05D006036 2.5e-157 560.5 902 42.0
EL10Ac6g14694 Beta vulgaris HOM05D004844 ORTHO05D006036 5.5e-157 559.3 965 40.6
CiPaw.06G094100 Carya illinoinensis HOM05D004844 ORTHO05D006036 3.6e-156 556.6 873 42.8
FAN22G0359 Fragaria x ananassa HOM05D004844 ORTHO05D006036 3.3e-154 550.1 964 40.0
FAN17G0509 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.4e-154 549.7 956 40.7
A02p15610 Brassica napus HOM05D004844 ORTHO05D006036 7.5e-154 548.9 952 41.4
C02p25790 Brassica napus HOM05D004844 ORTHO05D006036 1.7e-153 547.7 939 40.4
Lsat_1_v5_gn_8_35620 Lactuca sativa HOM05D004844 ORTHO05D006036 2.2e-153 547.4 951 43.3
CARHR061950 Cardamine hirsuta HOM05D004844 ORTHO05D006036 4.8e-153 546.2 941 39.6
FAN12G1456 Fragaria x ananassa HOM05D004844 ORTHO05D006036 1.4e-152 544.7 923 41.4
Carub.0002s1569 Capsella rubella HOM05D004844 ORTHO05D006036 1.2e-151 541.6 942 40.0
AL2G28120 Arabidopsis lyrata HOM05D004844 ORTHO05D006036 2.0e-151 540.8 919 41.0
RcHm_v2.0_Chr4g0437801 Rosa chinensis HOM05D004844 ORTHO05D006036 3.5e-151 540.0 950 40.0
Atru.BG.298.p Acer truncatum HOM05D004844 ORTHO05D006036 7.7e-151 538.9 915 39.8
BolC2t08648H Brassica oleracea HOM05D004844 ORTHO05D006036 1.0e-150 538.5 941 41.9
FvH4_4g29570 Fragaria vesca HOM05D004844 ORTHO05D006036 1.3e-150 538.1 964 42.7
BraA02t06622Z Brassica rapa HOM05D004844 ORTHO05D006036 2.9e-150 537.0 944 41.0
AT1G69070 Arabidopsis thaliana HOM05D004844 ORTHO05D006036 2.3e-147 527.3 943 39.4
Lj6A775T24 Lonicera japonica HOM05D004844 ORTHO05D006036 5.0e-142 509.6 974 39.5
CBR_g4135 Chara braunii HOM05D004844 ORTHO05D006036 3.2e-141 506.9 909 44.1
FAN07G0902 Fragaria x ananassa HOM05D004844 ORTHO05D006036 4.9e-137 493.0 969 38.6
BcaC03g15030 Brassica carinata HOM05D004844 ORTHO05D006036 2.4e-120 437.6 914 37.9
TPR.G25170 Trifolium pratense HOM05D004844 ORTHO05D006036 1.2e-114 418.7 448 49.1
MD13G1058900 Malus domestica HOM05D004844 ORTHO05D006036 1.6e-103 381.7 828 35.6
Glyma.18G236233 Glycine max HOM05D004844 ORTHO05D006036 1.5e-98 365.2 400 49.8
SEGI_27898 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 2.0e-90 338.2 476 48.5
Medtr1g442820 Medicago truncatula HOM05D004844 ORTHO05D006036 5.8e-90 336.7 596 42.8
Oeu019000.3 Olea europaea HOM05D004844 ORTHO05D006036 7.6e-90 336.3 682 36.8
Nitab4.5_0000027g0130 Nicotiana tabacum HOM05D004844 ORTHO05D006036 2.1e-87 328.2 481 41.6
TAR627G1107 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.8e-86 325.1 598 42.6
PRCOL_00006390 Prasinoderma coloniale HOM05D004844 ORTHO05D006036 9.3e-80 302.8 926 33.6
Oeu063767.1 Olea europaea HOM05D004844 ORTHO05D006036 3.3e-77 294.3 518 41.9
SEGI_13774 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.7e-68 264.2 266 52.3
unitig_62.g23699 Utricularia gibba HOM05D004844 ORTHO05D006036 2.7e-63 248.1 448 36.8
Cre06.g260850 Chlamydomonas reinhardtii HOM05D004844 ORTHO05D006036 4.8e-60 237.3 1162 31.1
SEGI_03778 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 4.7e-55 220.7 391 45.8
TAR623G1540 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.0e-54 219.5 272 46.7
TPR.G25179 Trifolium pratense HOM05D004844 ORTHO05D006036 8.0e-47 193.4 311 41.8
HPP92_012262 Vanilla planifolia HOM05D004844 ORTHO05D008684 8.0e-47 193.4 266 41.0
MCO13G646 Micromonas commoda HOM05D004844 ORTHO05D006036 3.9e-46 191.0 657 33.5
TAR623G0736 Trochodendron aralioides HOM05D004844 ORTHO05D006036 1.8e-43 182.2 324 39.2
Haze_11873 Corylus avellana HOM05D004844 ORTHO05D006036 1.7e-41 175.6 327 42.2
TAR623G0992 Trochodendron aralioides HOM05D004844 ORTHO05D006036 8.5e-41 173.3 283 50.9
SEGI_11983 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 3.1e-35 154.8 132 64.4
AagrBONN_evm.TU.Sc2ySwM_362.1117 Anthoceros agrestis HOM05D004844 ORTHO05D006036 1.2e-34 152.9 273 47.6
SEGI_26642 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 7.7e-34 150.2 141 58.2
HPP92_012261 Vanilla planifolia HOM05D004844 ORTHO05D006036 2.9e-33 148.3 374 35.8
Rhsim10G0117800 Rhododendron simsii HOM05D004844 ORTHO05D006036 1.2e-31 142.9 194 45.9
Glyma.18G236167 Glycine max HOM05D004844 ORTHO05D006036 6.8e-30 137.1 244 41.8
SEGI_15727 Sequoiadendron giganteum HOM05D004844 ORTHO05D006036 1.4e-22 112.8 114 57.9
Cfa022757 Carpinus fangiana HOM05D004844 ORTHO05D126324 4.9e-20 104.4 777 24.2
Actinidia04685 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.1e-19 103.2 95 57.9
EL10Ac3g06594 Beta vulgaris HOM05D004844 ORTHO05D006036 1.8e-19 102.4 99 46.5
Actinidia04727 Actinidia chinensis HOM05D004844 ORTHO05D006036 4.1e-19 101.3 100 56.0
Actinidia04686 Actinidia chinensis HOM05D004844 ORTHO05D006036 7.0e-19 100.5 91 58.2
BolC2t08646H Brassica oleracea HOM05D004844 ORTHO05D006036 7.0e-19 100.5 89 58.4
C02p25770 Brassica napus HOM05D004844 ORTHO05D006036 3.5e-18 98.2 89 58.4
EL10Ac6g14485 Beta vulgaris HOM05D004844 ORTHO05D006036 3.8e-17 94.7 114 42.1
EL10Ac5g11674 Beta vulgaris HOM05D004844 ORTHO05D010835 4.3e-16 91.3 107 43.0
unitig_62.g23698 Utricularia gibba HOM05D004844 ORTHO05D006036 1.4e-14 86.3 254 35.8
MD13G1058800 Malus domestica HOM05D004844 ORTHO05D006036 7.0e-11 73.9 66 62.1
Actinidia27764 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.9e-08 65.9 46 71.7
Oeu048129.1 Olea europaea HOM05D004844 ORTHO05D006036 3.3e-08 65.1 315 31.4
RcHm_v2.0_Chr1g0340811 Rosa chinensis HOM05D004844 ORTHO05D006036 9.5e-08 63.5 57 57.9
Actinidia04726 Actinidia chinensis HOM05D004844 ORTHO05D006036 1.8e-06 59.3 45 68.9


User provided reference genes

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