Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0016 Marchantia polymorpha HOM05D004855 ORTHO05D005656 2.9e-57 224.9 110 100.0
SEGI_35741 Sequoiadendron giganteum HOM05D004855 ORTHO05D005656 2.4e-27 125.6 106 54.7
Pp3c2_28010 Physcomitrium patens HOM05D004855 ORTHO05D005656 2.5e-24 115.5 106 51.9
Lsat_1_v5_gn_8_77441 Lactuca sativa HOM05D004855 ORTHO05D005656 1.8e-22 109.4 106 49.1
ATR0706G105 Amborella trichopoda HOM05D004855 ORTHO05D005656 5.2e-22 107.8 105 47.6
CDE08G1222 Ceratophyllum demersum HOM05D004855 ORTHO05D005656 1.5e-21 106.3 106 46.2
GSVIVG01033859001 Vitis vinifera HOM05D004855 ORTHO05D005656 2.6e-21 105.5 106 46.2
Eucgr.K02028 Eucalyptus grandis HOM05D004855 ORTHO05D005656 7.6e-21 104.0 106 46.2
Os01g0253600 Oryza sativa ssp. japonica HOM05D004855 ORTHO05D005656 1.3e-20 103.2 106 45.3
AUR62030671 Chenopodium quinoa HOM05D004855 ORTHO05D005656 1.7e-20 102.8 106 44.3
PSO339G3393 Papaver somniferum HOM05D004855 ORTHO05D005656 2.2e-20 102.4 106 45.3
PSO384G0979 Papaver somniferum HOM05D004855 ORTHO05D005656 2.2e-20 102.4 106 45.3
TAR633G0291 Trochodendron aralioides HOM05D004855 ORTHO05D005656 2.9e-20 102.1 106 45.3
Dinv21197 Davidia involucrata HOM05D004855 ORTHO05D005656 6.4e-20 100.9 106 43.4
TWI77G0302 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 6.4e-20 100.9 106 42.5
arahy.Tifrunner.gnm1.ann1.DCW42B Arachis hypogaea HOM05D004855 ORTHO05D005656 8.4e-20 100.5 106 43.4
MBI18_g09594_MAGBIO Magnolia biondii HOM05D004855 ORTHO05D005656 8.4e-20 100.5 106 43.4
Ah.10g026130 Amaranthus hybridus HOM05D004855 ORTHO05D005656 1.1e-19 100.1 106 41.5
AL7G35690 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.4e-19 99.8 106 44.3
BcaC09g51486 Brassica carinata HOM05D004855 ORTHO05D005656 1.4e-19 99.8 113 45.1
Haze_19625 Corylus avellana HOM05D004855 ORTHO05D005656 1.9e-19 99.4 106 43.4
CANSAT78G0615 Cannabis sativa HOM05D004855 ORTHO05D005656 2.4e-19 99.0 110 40.9
CAN.G128.111 Capsicum annuum HOM05D004855 ORTHO05D005656 2.4e-19 99.0 107 45.8
MD14G1024000 Malus domestica HOM05D004855 ORTHO05D005656 2.4e-19 99.0 112 42.0
BraA01t01006Z Brassica rapa HOM05D004855 ORTHO05D005656 3.2e-19 98.6 109 45.9
Gohir.A11G319200 Gossypium hirsutum HOM05D004855 ORTHO05D005656 3.2e-19 98.6 106 44.3
Gorai.007G368300 Gossypium raimondii HOM05D004855 ORTHO05D005656 3.2e-19 98.6 106 44.3
AagrBONN_evm.TU.Sc2ySwM_117.343 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.1e-19 98.2 98 46.9
AagrBONN_evm.TU.Sc2ySwM_362.2757 Anthoceros agrestis HOM05D004855 ORTHO05D005656 4.1e-19 98.2 98 46.9
ECA236G2758 Erigeron canadensis HOM05D004855 ORTHO05D005656 4.1e-19 98.2 106 44.3
TWI74G1617 Tripterygium wilfordii HOM05D004855 ORTHO05D005656 4.1e-19 98.2 106 40.6
Zm00001eb127650 Zea mays HOM05D004855 ORTHO05D005656 4.1e-19 98.2 106 43.4
CANSAT64G1995 Cannabis sativa HOM05D004855 ORTHO05D005656 5.4e-19 97.8 109 43.1
Dinv10926 Davidia involucrata HOM05D004855 ORTHO05D005656 5.4e-19 97.8 106 41.5
Phvul.007G022600 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 5.4e-19 97.8 106 41.5
Aa31LG6G1320 Aethionema arabicum HOM05D004855 ORTHO05D005656 7.1e-19 97.4 106 42.5
CiPaw.09G015100 Carya illinoinensis HOM05D004855 ORTHO05D005656 7.1e-19 97.4 109 44.0
Sc20g0006340 Simmondsia chinensis HOM05D004855 ORTHO05D005656 7.1e-19 97.4 106 41.5
Cfa016620 Carpinus fangiana HOM05D004855 ORTHO05D005656 9.2e-19 97.1 106 42.5
THA.LOC104804847 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 9.2e-19 97.1 106 43.4
VMungo0720G0894 Vigna mungo HOM05D004855 ORTHO05D005656 9.2e-19 97.1 106 41.5
AT4G18590 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 1.2e-18 96.7 106 42.5
Migut.L01788 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.2e-18 96.7 107 43.9
Thhalv10026639m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 1.2e-18 96.7 109 45.9
Gohir.D11G338500 Gossypium hirsutum HOM05D004855 ORTHO05D005656 1.2e-18 96.7 106 43.4
Lalb_Chr25g0288301 Lupinus albus HOM05D004855 ORTHO05D005656 1.2e-18 96.7 106 42.5
Zm00001eb333640 Zea mays HOM05D004855 ORTHO05D005656 1.2e-18 96.7 106 42.5
Nn6g34881 Nelumbo nucifera HOM05D004855 ORTHO05D005656 1.6e-18 96.3 106 45.3
THA.LOC104805250 Tarenaya hassleriana HOM05D004855 ORTHO05D005656 1.6e-18 96.3 106 40.6
Prupe.7G108800 Prunus persica HOM05D004855 ORTHO05D005656 2.1e-18 95.9 109 43.1
PGR142G1385 Punica granatum HOM05D004855 ORTHO05D005656 2.1e-18 95.9 106 43.4
Ciclev10013171m.g Citrus clementina HOM05D004855 ORTHO05D005656 2.7e-18 95.5 106 39.6
SalBow3G4427 Salvia bowleyana HOM05D004855 ORTHO05D005656 2.7e-18 95.5 106 39.6
Sed0021085 Sechium edule HOM05D004855 ORTHO05D005656 2.7e-18 95.5 109 42.2
TPR.G2466 Trifolium pratense HOM05D004855 ORTHO05D005656 2.7e-18 95.5 106 38.7
Ca_25663_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.5e-18 95.1 105 37.1
Lj1g0021036 Lotus japonicus HOM05D004855 ORTHO05D005656 3.5e-18 95.1 106 40.6
Actinidia31268 Actinidia chinensis HOM05D004855 ORTHO05D005656 4.6e-18 94.7 109 43.1
BcaNung03818 Brassica carinata HOM05D004855 ORTHO05D005656 4.6e-18 94.7 109 44.0
BcaNung06738 Brassica carinata HOM05D004855 ORTHO05D005656 4.6e-18 94.7 109 44.0
GSVIVG01000981001 Vitis vinifera HOM05D004855 ORTHO05D005656 4.6e-18 94.7 109 39.4
Atru.chr8.1484 Acer truncatum HOM05D004855 ORTHO05D005656 6.0e-18 94.4 106 40.6
CARHR162450 Cardamine hirsuta HOM05D004855 ORTHO05D005656 6.0e-18 94.4 106 42.5
ClCG10G018900 Citrullus lanatus HOM05D004855 ORTHO05D005656 6.0e-18 94.4 106 42.5
Potri.006G211900 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.0e-18 94.4 106 40.6
Potri.006G212100 Populus trichocarpa HOM05D004855 ORTHO05D005656 6.0e-18 94.4 106 40.6
TPR.G20467 Trifolium pratense HOM05D004855 ORTHO05D005656 7.8e-18 94.0 106 37.7
Aqoxy4G02764 Aquilegia oxysepala HOM05D004855 ORTHO05D005656 1.0e-17 93.6 106 41.5
CSS0028852 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.0e-17 93.6 112 41.1
Carub.0005s1905 Capsella rubella HOM05D004855 ORTHO05D005656 1.0e-17 93.6 106 40.6
Migut.J01024 Erythranthe guttata HOM05D004855 ORTHO05D005656 1.3e-17 93.2 107 41.1
AL5G33410 Arabidopsis lyrata HOM05D004855 ORTHO05D005656 1.7e-17 92.8 106 39.6
Carub.0007s2265 Capsella rubella HOM05D004855 ORTHO05D005656 1.7e-17 92.8 113 43.4
MELO3C009479.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.7e-17 92.8 106 42.5
Thecc.05G090600 Theobroma cacao HOM05D004855 ORTHO05D005656 1.7e-17 92.8 109 42.2
AT3G52630 Arabidopsis thaliana HOM05D004855 ORTHO05D005656 2.3e-17 92.4 106 39.6
Medtr1g112020 Medicago truncatula HOM05D004855 ORTHO05D005656 2.3e-17 92.4 106 36.8
TPR.G23346 Trifolium pratense HOM05D004855 ORTHO05D005656 2.3e-17 92.4 106 39.6
Cc06_g05940 Coffea canephora HOM05D004855 ORTHO05D005656 3.0e-17 92.0 107 42.1
CsaV3_3G037350 Cucumis sativus L. HOM05D004855 ORTHO05D005656 3.0e-17 92.0 106 41.5
Duzib106G1994 Durio zibethinus HOM05D004855 ORTHO05D005656 3.0e-17 92.0 106 39.6
Ca_09013_v3 Cicer arietinum L. HOM05D004855 ORTHO05D005656 3.9e-17 91.7 110 41.8
Glyma.03G196800 Glycine max HOM05D004855 ORTHO05D005656 3.9e-17 91.7 106 42.5
Sopen10g031710 Solanum pennellii HOM05D004855 ORTHO05D005656 3.9e-17 91.7 110 43.6
Manes.09G054300 Manihot esculenta HOM05D004855 ORTHO05D005656 5.1e-17 91.3 106 39.6
Glyma.10G278800 Glycine max HOM05D004855 ORTHO05D005656 6.6e-17 90.9 106 38.7
Medtr1g112040 Medicago truncatula HOM05D004855 ORTHO05D005656 8.7e-17 90.5 106 36.8
Sp5g09660 Schrenkiella parvula HOM05D004855 ORTHO05D005656 8.7e-17 90.5 106 40.6
Sed0005547 Sechium edule HOM05D004855 ORTHO05D005656 8.7e-17 90.5 110 38.2
Sp7g15440 Schrenkiella parvula HOM05D002603 ORTHO05D002907 1.1e-16 90.1 104 47.1
SGA_v2.0_scaffold31G12906 Striga asiatica HOM05D004855 ORTHO05D005656 1.1e-16 90.1 102 43.1
Lalb_Chr21g0309181 Lupinus albus HOM05D004855 ORTHO05D005656 1.5e-16 89.7 106 38.7
TPR.G762 Trifolium pratense HOM05D004855 ORTHO05D005656 1.5e-16 89.7 106 36.8
CiPaw.13G039700 Carya illinoinensis HOM05D004855 ORTHO05D005656 1.9e-16 89.4 106 44.3
Phvul.001G191000 Phaseolus vulgaris HOM05D004855 ORTHO05D005656 2.5e-16 89.0 105 40.0
MSTRG.5853 Avicennia marina HOM05D004855 ORTHO05D005656 3.3e-16 88.6 106 39.6
BcaB02g07823 Brassica carinata HOM05D004855 ORTHO05D005656 5.6e-16 87.8 107 39.3
FvH4_6g18910 Fragaria vesca HOM05D004855 ORTHO05D005656 7.3e-16 87.4 106 35.8
Thhalv10010848m.g Eutrema salsugineum HOM05D004855 ORTHO05D005656 9.6e-16 87.0 106 40.6
BolC1t01228H Brassica oleracea HOM05D002603 ORTHO05D002907 1.2e-15 86.7 97 46.4
FAN05G0016 Fragaria x ananassa HOM05D004855 ORTHO05D005656 1.2e-15 86.7 106 35.8
Medtr7g104870 Medicago truncatula HOM05D004855 ORTHO05D005656 1.6e-15 86.3 104 39.4
Psat3g032240 Pisum sativum HOM05D004855 ORTHO05D005656 1.6e-15 86.3 113 38.1
CsaV3_5G035370 Cucumis sativus L. HOM05D004855 ORTHO05D005656 2.8e-15 85.5 106 38.7
PGSC0003DMG400008876 Solanum tuberosum HOM05D004855 ORTHO05D005656 2.8e-15 85.5 105 37.1
RcHm_v2.0_Chr3g0473901 Rosa chinensis HOM05D004855 ORTHO05D005656 3.6e-15 85.1 109 34.9
FAN02G3816 Fragaria x ananassa HOM05D004855 ORTHO05D005656 4.7e-15 84.7 109 34.9
CAN.G397.61 Capsicum annuum HOM05D004855 ORTHO05D005656 6.2e-15 84.3 106 36.8
Lj5g0001855 Lotus japonicus HOM05D004855 ORTHO05D005656 6.2e-15 84.3 106 35.8
Peaxi162Scf00404g00216 Petunia axillaris HOM05D004855 ORTHO05D005656 6.2e-15 84.3 106 35.8
Oeu047859.1 Olea europaea HOM05D004855 ORTHO05D005656 8.1e-15 84.0 107 39.3
CBR_g41290 Chara braunii HOM05D004855 ORTHO05D005656 1.1e-14 83.6 104 40.4
Glyma.20G111700 Glycine max HOM05D004855 ORTHO05D005656 1.1e-14 83.6 105 35.2
Potri.010G239200 Populus trichocarpa HOM05D004855 ORTHO05D005656 1.1e-14 83.6 106 37.7
Nitab4.5_0000692g0080 Nicotiana tabacum HOM05D004855 ORTHO05D005656 1.4e-14 83.2 106 35.8
VMungo1383G3261 Vigna mungo HOM05D004855 ORTHO05D005656 1.4e-14 83.2 104 37.5
CARHR225430 Cardamine hirsuta HOM05D004855 ORTHO05D005656 1.8e-14 82.8 92 44.6
MELO3C012349.2 Cucumis melo HOM05D004855 ORTHO05D005656 1.8e-14 82.8 106 37.7
MD12G1025300 Malus domestica HOM05D004855 ORTHO05D005656 1.8e-14 82.8 104 36.5
Cfa021941 Carpinus fangiana HOM05D004855 ORTHO05D005656 2.4e-14 82.4 106 37.7
QL04p046696 Quercus lobata HOM05D004855 ORTHO05D005656 3.1e-14 82.0 105 35.2
Sopen09g004650 Solanum pennellii HOM05D004855 ORTHO05D005656 3.1e-14 82.0 105 35.2
Sabra10G0187300 Salix brachista HOM05D004855 ORTHO05D005656 2.0e-13 79.3 106 36.8
Cpa.g.sc5.8 Carica papaya HOM05D004855 ORTHO05D005656 2.6e-13 79.0 84 44.0
Zm00001eb121860 Zea mays HOM05D003776 ORTHO05D005656 4.4e-13 78.2 84 44.0
Nitab4.5_0000062g0480 Nicotiana tabacum HOM05D004855 ORTHO05D005656 2.2e-12 75.9 89 41.6
Nitab4.5_0003808g0090 Nicotiana tabacum HOM05D004855 ORTHO05D005656 4.9e-12 74.7 92 43.5
HPP92_016958 Vanilla planifolia HOM05D004855 ORTHO05D005656 4.9e-12 74.7 85 40.0
Hund19922 Selenicereus undatus HOM05D004855 ORTHO05D005656 8.4e-12 73.9 84 39.3
A01p10600 Brassica napus HOM05D002603 ORTHO05D002907 1.1e-11 73.6 87 46.0
C01p12540 Brassica napus HOM05D002603 ORTHO05D002907 1.1e-11 73.6 87 46.0
Rhsim02G0090500 Rhododendron simsii HOM05D004855 ORTHO05D005656 1.1e-11 73.6 91 41.8
vmacro07416 Vaccinium macrocarpon HOM05D004855 ORTHO05D005656 1.1e-11 73.6 89 41.6
EL10Ac2g02589 Beta vulgaris HOM05D004855 ORTHO05D005656 1.9e-11 72.8 84 38.1
Eucgr.K02554 Eucalyptus grandis HOM05D004855 ORTHO05D005656 3.2e-11 72.0 106 37.7
RhsimUnG0050400 Rhododendron simsii HOM05D000314 ORTHO05D000189 4.2e-11 71.6 88 42.0
PRCOL_00005602 Prasinoderma coloniale HOM05D004855 ORTHO05D005656 9.3e-11 70.5 111 36.0
QL07p038661 Quercus lobata HOM05D004855 ORTHO05D005656 9.3e-11 70.5 87 42.5
Solyc10g081210.3 Solanum lycopersicum HOM05D004855 ORTHO05D005656 9.3e-11 70.5 94 40.4
COL.COLO4_29712 Corchorus olitorius HOM05D004855 ORTHO05D005656 2.1e-10 69.3 93 40.9
Rhsim03G0015500 Rhododendron simsii HOM05D004855 ORTHO05D005656 4.6e-10 68.2 89 40.4
PGSC0003DMG400028113 Solanum tuberosum HOM05D004855 ORTHO05D005656 1.0e-09 67.0 86 44.2
Sabra06G0163300 Salix brachista HOM05D004855 ORTHO05D005656 3.0e-09 65.5 85 34.1
Duzib093G1614 Durio zibethinus HOM05D004855 ORTHO05D005656 6.6e-09 64.3 89 38.2
CSS0024102 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 8.7e-09 63.9 85 38.8
Sed0001253 Sechium edule HOM05D004855 ORTHO05D005656 1.1e-08 63.5 86 37.2
MCO11G135 Micromonas commoda HOM05D004855 ORTHO05D005656 4.3e-08 61.6 107 31.8
CSS0041239 Camellia sinensis var. sinensis HOM05D004855 ORTHO05D005656 1.3e-07 60.1 85 36.5
Manes.10G061800 Manihot esculenta HOM05D004855 ORTHO05D005656 1.6e-07 59.7 84 33.3
Peaxi162Scf00153g00093 Petunia axillaris HOM05D004855 ORTHO05D005656 1.6e-07 59.7 64 48.4
unitig_749.g14301 Utricularia gibba HOM05D004855 ORTHO05D005656 1.4e-06 56.6 72 33.3
Psat3g176360 Pisum sativum HOM05D004855 ORTHO05D005656 2.4e-06 55.8 87 34.5


User provided reference genes

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