Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0013 Marchantia polymorpha HOM05D002965 ORTHO05D010183 7.6e-46 186.8 94 100.0
Ah.10g028480 Amaranthus hybridus HOM05D002965 ORTHO05D010183 1.9e-17 92.4 65 66.2
Dinv06704 Davidia involucrata HOM05D002965 ORTHO05D010183 5.7e-17 90.9 65 64.6
QL05p039661 Quercus lobata HOM05D002965 ORTHO05D010183 5.7e-17 90.9 65 64.6
Actinidia10888 Actinidia chinensis HOM05D002965 ORTHO05D010183 9.7e-17 90.1 65 64.6
SalBow1G8555 Salvia bowleyana HOM05D002965 ORTHO05D010183 9.7e-17 90.1 65 64.6
SGA_v2.0_scaffold479G52282 Striga asiatica HOM05D002965 ORTHO05D010183 9.7e-17 90.1 65 64.6
Cpa.g.sc263.23 Carica papaya HOM05D002965 ORTHO05D010183 2.8e-16 88.6 65 64.6
CDE02G3239 Ceratophyllum demersum HOM05D002965 ORTHO05D010183 4.8e-16 87.8 65 63.1
CAN.G309.4 Capsicum annuum HOM05D002965 ORTHO05D010183 6.3e-16 87.4 65 64.6
Nitab4.5_0005613g0040 Nicotiana tabacum HOM05D002965 ORTHO05D010183 6.3e-16 87.4 65 64.6
Sopen05g012840 Solanum pennellii HOM05D002965 ORTHO05D010183 6.3e-16 87.4 65 64.6
unitig_87.g27935 Utricularia gibba HOM05D002965 ORTHO05D010183 8.2e-16 87.0 65 64.6
Hma1.2p1_1338F.1_g276549 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 1.4e-15 86.3 65 63.1
Hma1.2p1_1338F.1_g276560 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 1.4e-15 86.3 65 63.1
ATMG01120 Arabidopsis thaliana HOM05D002965 ORTHO05D010183 1.8e-15 85.9 64 64.1
arahy.Tifrunner.gnm1.ann1.CG3D8R Arachis hypogaea HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
arahy.Tifrunner.gnm1.ann1.EP7E6M Arachis hypogaea HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
arahy.Tifrunner.gnm1.ann1.I1QAK6 Arachis hypogaea HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
CsaV3_UNG209220 Cucumis sativus L. HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
LjContig00315g0010995 Lotus japonicus HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
Medtr0082s0280 Medicago truncatula HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
Sed0028066 Sechium edule HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
TPR.G40481 Trifolium pratense HOM05D002965 ORTHO05D010183 2.4e-15 85.5 65 63.1
Ca_28103_v3 Cicer arietinum L. HOM05D003430 ORTHO05D004809 5.3e-15 84.3 65 61.5
CAN.G1576.4 Capsicum annuum HOM05D002965 ORTHO05D010183 7.7e-14 80.5 59 67.8
Nitab4.5_0001761g0080 Nicotiana tabacum HOM05D002965 ORTHO05D010183 7.7e-14 80.5 61 63.9
Sp3g25630 Schrenkiella parvula HOM05D002965 ORTHO05D010183 7.7e-14 80.5 59 67.8
Hma1.2p1_0000F.1_g000060 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 2.2e-13 79.0 65 56.9
Psat3g040160 Pisum sativum HOM05D004537 ORTHO05D005492 2.2e-13 79.0 56 69.6
Hma1.2p1_0204F.1_g086870 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 2.9e-13 78.6 65 56.9
Lsat_1_v5_gn_4_66041 Lactuca sativa HOM05D002965 ORTHO05D010183 3.8e-13 78.2 50 72.0
Psat6g191080 Pisum sativum HOM05D002965 ORTHO05D010183 6.5e-13 77.4 63 57.1
HanXRQChr08g0212281 Helianthus annuus HOM05D002965 ORTHO05D010183 3.2e-12 75.1 50 70.0
HanXRQMTg0579441 Helianthus annuus HOM05D002965 ORTHO05D010183 3.2e-12 75.1 50 70.0
Potri.007G061981 Populus trichocarpa HOM05D002965 ORTHO05D010183 3.2e-12 75.1 50 70.0
SHI48910 Sapria himalayana HOM05D002965 ORTHO05D010183 3.2e-12 75.1 50 70.0
Nitab4.5_0000172g1470 Nicotiana tabacum HOM05D002965 ORTHO05D010183 4.2e-12 74.7 64 59.4
Nitab4.5_0005831g0070 Nicotiana tabacum HOM05D002965 ORTHO05D010183 4.2e-12 74.7 65 58.5
CAN.G1439.3 Capsicum annuum HOM05D002965 ORTHO05D010183 9.4e-12 73.6 59 64.4
SMO053G0011 Selaginella moellendorffii HOM05D002965 ORTHO05D010183 3.6e-11 71.6 65 53.8
Lalb_Chr00c21g0405781 Lupinus albus HOM05D002965 ORTHO05D010183 7.9e-11 70.5 50 68.0
RcHm_v2.0_MTg0499241 Rosa chinensis HOM05D002965 ORTHO05D010183 7.9e-11 70.5 50 68.0
COL.COLO4_02137 Corchorus olitorius HOM05D000533 ORTHO05D002807 1.8e-10 69.3 108 39.8
Nitab4.5_0001796g0410 Nicotiana tabacum HOM05D002965 ORTHO05D010183 3.0e-10 68.6 49 67.3
Medtr5g040110 Medicago truncatula HOM05D002965 ORTHO05D010183 6.7e-10 67.4 50 66.0
Solyc00g500086.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 8.8e-10 67.0 97 41.2
Solyc00g500123.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 8.8e-10 67.0 97 41.2
Solyc00g500193.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 8.8e-10 67.0 97 41.2
AL9U11959 Arabidopsis lyrata HOM05D000533 ORTHO05D002807 1.1e-09 66.6 64 48.4
EL10Ac1g02291 Beta vulgaris HOM05D000533 ORTHO05D002807 1.1e-09 66.6 64 51.6
EL10As15g24098 Beta vulgaris HOM05D000533 ORTHO05D002807 1.1e-09 66.6 64 51.6
Gohir.A10G063750 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.1e-09 66.6 64 51.6
Aqoxy1G02687 Aquilegia oxysepala HOM05D002965 ORTHO05D010183 1.5e-09 66.2 50 64.0
CAN.G1298.18 Capsicum annuum HOM05D000533 ORTHO05D002807 1.5e-09 66.2 98 41.8
Gohir.D05G308833 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.5e-09 66.2 64 50.0
HanXRQChr00c0289g0573151 Helianthus annuus HOM05D000533 ORTHO05D002807 1.5e-09 66.2 64 51.6
HanXRQChr09g0258481 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-09 66.2 64 51.6
HanXRQChr15g0465421 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-09 66.2 64 51.6
HanXRQChr15g0465471 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-09 66.2 64 51.6
HanXRQChr17g0569711 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-09 66.2 64 51.6
HanXRQChr17g0569761 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-09 66.2 64 51.6
HanXRQCPg0580331 Helianthus annuus HOM05D000533 ORTHO05D001069 1.5e-09 66.2 64 51.6
ATCG01100 Arabidopsis thaliana HOM05D000533 ORTHO05D002807 2.0e-09 65.9 98 40.8
CAN.G1045.10 Capsicum annuum HOM05D000533 ORTHO05D002807 2.0e-09 65.9 64 50.0
CAN.G1526.1 Capsicum annuum HOM05D000533 ORTHO05D002807 2.0e-09 65.9 64 50.0
CARHR282470 Cardamine hirsuta HOM05D000533 ORTHO05D002807 2.0e-09 65.9 98 40.8
MELO3C031425.2 Cucumis melo HOM05D002965 ORTHO05D010183 2.0e-09 65.9 53 58.5
DCAR_032541 Daucus carota HOM05D000533 ORTHO05D002807 2.0e-09 65.9 98 41.8
Medtr4g006100 Medicago truncatula HOM05D000533 ORTHO05D001069 2.0e-09 65.9 64 50.0
Medtr4g050810 Medicago truncatula HOM05D000533 ORTHO05D006151 2.0e-09 65.9 64 50.0
Medtr6g042200 Medicago truncatula HOM05D000533 ORTHO05D001069 2.0e-09 65.9 64 50.0
Medtr7g021700 Medicago truncatula HOM05D000533 ORTHO05D006151 2.0e-09 65.9 64 50.0
Peaxi162Scf00030g02119 Petunia axillaris HOM05D000533 ORTHO05D006151 2.0e-09 65.9 64 50.0
Peaxi162Scf00269g01411 Petunia axillaris HOM05D000533 ORTHO05D006151 2.0e-09 65.9 64 50.0
Psat7g150960 Pisum sativum HOM05D000533 ORTHO05D001069 2.0e-09 65.9 64 50.0
PGR111G0022 Punica granatum HOM05D000533 ORTHO05D002807 2.0e-09 65.9 98 41.8
Sed0004290 Sechium edule HOM05D000533 ORTHO05D002807 2.0e-09 65.9 64 51.6
Sed0023589 Sechium edule HOM05D000533 ORTHO05D002807 2.0e-09 65.9 64 51.6
Sed0023659 Sechium edule HOM05D000533 ORTHO05D002807 2.0e-09 65.9 64 51.6
Solyc00g500041.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.0e-09 65.9 64 50.0
Solyc02g080275.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 2.0e-09 65.9 64 50.0
arahy.Tifrunner.gnm1.ann1.RBM67I Arachis hypogaea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 50.0
C09p40310 Brassica napus HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolC9t56913H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolSC29t60509H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolSC29t60549H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolSC35t60689H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolSC35t60707H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolSC44t60825H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolSC47t61062H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BolSC49t61146H Brassica oleracea HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BraSC103t45432Z Brassica rapa HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
BraSC143t45657Z Brassica rapa HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 48.4
Migut.D01249 Erythranthe guttata HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 50.0
Lju5009P0T26 Lonicera japonica HOM05D000533 ORTHO05D002807 2.5e-09 65.5 98 40.8
LjContig00318g0007609 Lotus japonicus HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 50.0
LjContig00319g0005103 Lotus japonicus HOM05D000533 ORTHO05D002807 2.5e-09 65.5 64 50.0
MELO3C000179.2 Cucumis melo HOM05D000533 ORTHO05D002807 3.3e-09 65.1 64 50.0
Lsat_1_v5_gn_8_62921 Lactuca sativa HOM05D000533 ORTHO05D002807 3.3e-09 65.1 64 50.0
Nn1g07318 Nelumbo nucifera HOM05D000533 ORTHO05D002807 3.3e-09 65.1 64 50.0
PSO548G0012 Papaver somniferum HOM05D000533 ORTHO05D002807 3.3e-09 65.1 98 41.8
Sopen05g007970 Solanum pennellii HOM05D002965 ORTHO05D010183 3.3e-09 65.1 51 60.8
arahy.Tifrunner.gnm1.ann1.CXW88U Arachis hypogaea HOM05D000533 ORTHO05D002807 4.3e-09 64.7 64 50.0
SalBow1G0006 Salvia bowleyana HOM05D000533 ORTHO05D002807 4.3e-09 64.7 98 40.8
arahy.Tifrunner.gnm1.ann1.U57TMC Arachis hypogaea HOM05D000533 ORTHO05D002807 7.4e-09 63.9 64 48.4
HanXRQChr00c0336g0573691 Helianthus annuus HOM05D000533 ORTHO05D002807 9.7e-09 63.5 63 50.8
HanXRQChr02g0059741 Helianthus annuus HOM05D000533 ORTHO05D001069 9.7e-09 63.5 63 50.8
FAN01G0230 Fragaria x ananassa HOM05D000533 ORTHO05D002807 2.2e-08 62.4 64 46.9
Gorai.009G395200 Gossypium raimondii HOM05D000533 ORTHO05D002807 3.7e-08 61.6 64 48.4
Solyc11g021230.1 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.7e-08 61.6 64 46.9
MBI10_g47594_MAGBIO Magnolia biondii HOM05D000533 ORTHO05D001069 4.8e-08 61.2 94 40.4
Solyc10g018950.1 Solanum lycopersicum HOM05D002965 ORTHO05D010183 4.8e-08 61.2 54 51.9
Glyma.18G155550 Glycine max HOM05D000533 ORTHO05D002807 6.3e-08 60.8 62 50.0
CAN.G390.19 Capsicum annuum HOM05D002965 ORTHO05D010183 1.4e-07 59.7 53 60.4
Peaxi162Scf00197g00037 Petunia axillaris HOM05D002965 ORTHO05D010183 6.9e-07 57.4 59 52.5
TPR.G31189 Trifolium pratense HOM05D000533 ORTHO05D002807 9.1e-07 57.0 67 44.8
EL10As15g24139 Beta vulgaris HOM05D000533 ORTHO05D002807 1.2e-06 56.6 47 55.3
CsaV3_1G022940 Cucumis sativus L. HOM05D000533 ORTHO05D002807 1.2e-06 56.6 56 50.0
Gohir.D11G334101 Gossypium hirsutum HOM05D000533 ORTHO05D002807 1.5e-06 56.2 55 49.1
Nitab4.5_0017884g0010 Nicotiana tabacum HOM05D000533 ORTHO05D002807 1.5e-06 56.2 55 49.1
BNapus_Darmor_BZH_scaffold_234p00020 Brassica napus HOM05D002965 ORTHO05D010183 2.6e-06 55.5 33 78.8
BolSC28t60382H Brassica oleracea HOM05D002965 ORTHO05D010183 2.6e-06 55.5 33 78.8
BolSC28t60415H Brassica oleracea HOM05D002965 ORTHO05D010183 2.6e-06 55.5 33 78.8
BraSC177t45752Z Brassica rapa HOM05D002965 ORTHO05D010183 2.6e-06 55.5 33 78.8
BraSC48t46251Z Brassica rapa HOM05D002965 ORTHO05D010183 2.6e-06 55.5 33 78.8
Hma1.2p1_0713F.1_g207720 Hydrangea macrophylla HOM05D002965 ORTHO05D010183 2.6e-06 55.5 33 78.8
CSS0026545 Camellia sinensis var. sinensis HOM05D002965 ORTHO05D010183 3.4e-06 55.1 64 48.4
Solyc11g050760.2 Solanum lycopersicum HOM05D000533 ORTHO05D002807 3.4e-06 55.1 64 43.8
Eucgr.B03250 Eucalyptus grandis HOM05D000533 ORTHO05D002807 4.5e-06 54.7 54 48.1
Gohir.1Z049702 Gossypium hirsutum HOM05D000533 ORTHO05D002807 4.5e-06 54.7 56 48.2
Solyc00g118690.1 Solanum lycopersicum HOM05D002965 ORTHO05D010183 4.5e-06 54.7 33 78.8
BolC7t41501H Brassica oleracea HOM05D002965 ORTHO05D010183 5.9e-06 54.3 33 75.8
Psat1g104920 Pisum sativum HOM05D000533 ORTHO05D002807 5.9e-06 54.3 50 52.0


User provided reference genes

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