Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0013s0005 Marchantia polymorpha HOM05D004212 ORTHO05D005128 9.4e-170 600.1 307 100.0
Pp3c12_26190 Physcomitrium patens HOM05D004212 ORTHO05D005128 3.9e-67 259.2 311 52.4
GSVIVG01034068001 Vitis vinifera HOM05D004212 ORTHO05D005128 1.2e-63 247.7 307 49.5
TAR633G1640 Trochodendron aralioides HOM05D004212 ORTHO05D005128 3.4e-63 246.1 306 48.7
CDE02G2360 Ceratophyllum demersum HOM05D004212 ORTHO05D005128 1.3e-62 244.2 306 49.3
Thecc.05G029300 Theobroma cacao HOM05D004212 ORTHO05D005128 2.5e-61 240.0 307 47.2
Nn2g11289 Nelumbo nucifera HOM05D004212 ORTHO05D005128 5.5e-61 238.8 309 49.8
CANSAT35G0035 Cannabis sativa HOM05D004212 ORTHO05D005128 7.2e-61 238.4 311 48.9
unitig_62.g23469 Utricularia gibba HOM05D004212 ORTHO05D005128 9.4e-61 238.0 304 46.4
HPP92_005893 Vanilla planifolia HOM05D004212 ORTHO05D005128 1.2e-60 237.7 310 47.4
Cc06_g02090 Coffea canephora HOM05D004212 ORTHO05D005128 2.7e-60 236.5 314 47.8
Solyc09g011450.4 Solanum lycopersicum HOM05D004212 ORTHO05D005128 3.6e-60 236.1 311 48.2
MSTRG.10244 Avicennia marina HOM05D004212 ORTHO05D005128 7.9e-60 235.0 308 46.4
Oeu001834.1 Olea europaea HOM05D004212 ORTHO05D005128 1.0e-59 234.6 311 45.7
RcHm_v2.0_Chr4g0406841 Rosa chinensis HOM05D004212 ORTHO05D005128 1.8e-59 233.8 305 48.2
Sopen09g006170 Solanum pennellii HOM05D004212 ORTHO05D005128 2.3e-59 233.4 311 47.9
Lalb_Chr03g0042691 Lupinus albus HOM05D004212 ORTHO05D005128 8.8e-59 231.5 306 46.4
Nitab4.5_0008116g0030 Nicotiana tabacum HOM05D004212 ORTHO05D005128 1.1e-58 231.1 307 48.5
Peaxi162Scf00975g00132 Petunia axillaris HOM05D004212 ORTHO05D005128 4.4e-58 229.2 310 47.4
Phvul.006G149300 Phaseolus vulgaris HOM05D004212 ORTHO05D005128 9.7e-58 228.0 303 46.5
Psat3g133560 Pisum sativum HOM05D004212 ORTHO05D005128 9.7e-58 228.0 308 48.1
Haze_20882 Corylus avellana HOM05D004212 ORTHO05D005128 1.3e-57 227.6 342 43.6
Eucgr.K03043 Eucalyptus grandis HOM05D004212 ORTHO05D005128 1.3e-57 227.6 301 47.2
Migut.J00264 Erythranthe guttata HOM05D004212 ORTHO05D005128 1.7e-57 227.3 306 46.4
AL5G34970 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.2e-57 226.9 306 46.4
Haze_20891 Corylus avellana HOM05D004212 ORTHO05D005128 2.2e-57 226.9 342 43.6
Sed0021611 Sechium edule HOM05D004212 ORTHO05D005128 2.8e-57 226.5 313 47.9
FAN12G2442 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.7e-57 226.1 305 47.5
FAN12G3486 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.7e-57 226.1 305 47.5
AT3G53970 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.8e-57 225.7 306 46.7
TPR.G34923 Trifolium pratense HOM05D004212 ORTHO05D005128 8.2e-57 224.9 310 48.1
TWI53G1663 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 8.2e-57 224.9 322 47.8
CiPaw.09G201200 Carya illinoinensis HOM05D004212 ORTHO05D005128 1.4e-56 224.2 306 47.7
Cfa010180 Carpinus fangiana HOM05D004212 ORTHO05D005128 1.8e-56 223.8 305 45.9
Lj1g0008590 Lotus japonicus HOM05D004212 ORTHO05D005128 2.4e-56 223.4 311 45.7
Aa31LG10G8930 Aethionema arabicum HOM05D004212 ORTHO05D005128 3.1e-56 223.0 305 47.9
DCAR_028811 Daucus carota HOM05D004212 ORTHO05D005128 3.1e-56 223.0 304 44.4
Carub.0005s2056 Capsella rubella HOM05D004212 ORTHO05D005128 4.1e-56 222.6 311 45.3
Glyma.09G059100 Glycine max HOM05D004212 ORTHO05D005128 6.9e-56 221.9 305 45.9
Ca_07566_v3 Cicer arietinum L. HOM05D004212 ORTHO05D005128 9.1e-56 221.5 304 46.1
Lsat_1_v5_gn_8_84101 Lactuca sativa HOM05D004212 ORTHO05D005128 9.1e-56 221.5 309 47.2
FAN07G0792 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.2e-55 221.1 305 46.9
Potri.016G103800 Populus trichocarpa HOM05D004212 ORTHO05D005128 1.2e-55 221.1 311 47.3
HanXRQChr04g0124481 Helianthus annuus HOM05D004212 ORTHO05D005128 1.5e-55 220.7 310 46.5
ATR1134G026 Amborella trichopoda HOM05D004212 ORTHO05D005128 2.6e-55 219.9 309 45.0
ClCG04G007620 Citrullus lanatus HOM05D004212 ORTHO05D005128 2.6e-55 219.9 321 44.9
CsaV3_4G025590 Cucumis sativus L. HOM05D004212 ORTHO05D005128 4.5e-55 219.2 324 45.7
PGSC0003DMG400024265 Solanum tuberosum HOM05D004212 ORTHO05D005128 4.5e-55 219.2 327 45.0
THA.LOC104806541 Tarenaya hassleriana HOM05D004212 ORTHO05D005128 4.5e-55 219.2 311 48.9
TWI74G0733 Tripterygium wilfordii HOM05D004212 ORTHO05D005128 5.9e-55 218.8 326 46.0
MELO3C003185.2 Cucumis melo HOM05D004212 ORTHO05D005128 1.3e-54 217.6 321 45.2
Glyma.15G165200 Glycine max HOM05D004212 ORTHO05D005128 1.3e-54 217.6 303 45.5
Gohir.D01G209900 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.3e-54 217.6 306 45.1
Gorai.002G255500 Gossypium raimondii HOM05D004212 ORTHO05D005128 1.3e-54 217.6 306 45.1
arahy.Tifrunner.gnm1.ann1.PUF7HK Arachis hypogaea HOM05D004212 ORTHO05D005128 1.7e-54 217.2 309 45.0
Gohir.A01G221000 Gossypium hirsutum HOM05D004212 ORTHO05D005128 1.7e-54 217.2 306 45.4
Lalb_Chr19g0125041 Lupinus albus HOM05D004212 ORTHO05D005128 1.7e-54 217.2 305 44.9
Manes.09G098300 Manihot esculenta HOM05D004212 ORTHO05D005128 2.2e-54 216.9 311 45.3
CSS0007767 Camellia sinensis var. sinensis HOM05D004212 ORTHO05D005128 3.8e-54 216.1 303 44.9
Sabra16G0103700 Salix brachista HOM05D004212 ORTHO05D005128 3.8e-54 216.1 311 46.9
arahy.Tifrunner.gnm1.ann1.MS11WY Arachis hypogaea HOM05D004212 ORTHO05D005128 8.5e-54 214.9 309 45.0
COL.COLO4_14697 Corchorus olitorius HOM05D004212 ORTHO05D005128 1.1e-53 214.5 310 46.5
Zm00001eb323600 Zea mays HOM05D004212 ORTHO05D005128 3.2e-53 213.0 311 44.7
SMO115G0073 Selaginella moellendorffii HOM05D004212 ORTHO05D005128 4.2e-53 212.6 311 46.6
Medtr7g065120 Medicago truncatula HOM05D004212 ORTHO05D005128 7.2e-53 211.8 311 45.3
Os07g0548900 Oryza sativa ssp. japonica HOM05D004212 ORTHO05D005128 1.6e-52 210.7 309 43.7
ECA236G3305 Erigeron canadensis HOM05D004212 ORTHO05D005128 2.1e-52 210.3 306 44.1
Sc22g0004390 Simmondsia chinensis HOM05D004212 ORTHO05D005128 2.1e-52 210.3 306 45.8
arahy.Tifrunner.gnm1.ann1.59HWIF Arachis hypogaea HOM05D004212 ORTHO05D005128 4.7e-52 209.1 307 42.3
CARHR163870 Cardamine hirsuta HOM05D004212 ORTHO05D005128 1.0e-51 208.0 312 43.3
Atru.chr8.2089 Acer truncatum HOM05D004212 ORTHO05D005128 1.4e-51 207.6 305 47.2
EL10Ac3g05638 Beta vulgaris HOM05D004212 ORTHO05D005128 1.8e-51 207.2 317 46.1
arahy.Tifrunner.gnm1.ann1.77ZQ01 Arachis hypogaea HOM05D004212 ORTHO05D005128 2.3e-51 206.8 305 42.6
MD04G1138800 Malus domestica HOM05D004212 ORTHO05D005128 2.3e-51 206.8 312 45.5
Hund00715 Selenicereus undatus HOM05D004212 ORTHO05D005128 2.3e-51 206.8 311 46.0
SalBow7G2619 Salvia bowleyana HOM05D004212 ORTHO05D005128 3.9e-51 206.1 306 42.8
vmacro20195 Vaccinium macrocarpon HOM05D004212 ORTHO05D005128 1.1e-50 204.5 315 44.1
PGR004G1844 Punica granatum HOM05D004212 ORTHO05D005128 4.4e-50 202.6 312 41.7
MD12G1154600 Malus domestica HOM05D004212 ORTHO05D005128 5.7e-50 202.2 314 45.2
PSO339G0401 Papaver somniferum HOM05D004212 ORTHO05D005128 9.7e-50 201.4 312 42.3
VMungo0540G1009 Vigna mungo HOM05D004212 ORTHO05D005128 9.7e-50 201.4 303 43.6
PSO384G5122 Papaver somniferum HOM05D004212 ORTHO05D005128 1.7e-49 200.7 304 42.8
Aqoxy7G01126 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 3.7e-49 199.5 305 43.9
Prupe.6G264400 Prunus persica HOM05D004212 ORTHO05D005128 3.7e-49 199.5 320 45.0
Aqoxy4G03223 Aquilegia oxysepala HOM05D004212 ORTHO05D005128 2.4e-48 196.8 305 43.6
Ciclev10021036m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.1e-48 196.4 304 46.1
CBR_g46706 Chara braunii HOM05D004212 ORTHO05D005128 4.1e-48 196.1 360 43.9
arahy.Tifrunner.gnm1.ann1.SP0BHI Arachis hypogaea HOM05D004212 ORTHO05D005128 7.0e-48 195.3 292 45.2
AUR62021188 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.3e-46 191.0 310 43.2
QL07p028338 Quercus lobata HOM05D004212 ORTHO05D005128 2.1e-44 183.7 294 43.2
Ciclev10012365m.g Citrus clementina HOM05D004212 ORTHO05D005128 3.6e-44 183.0 302 44.4
FvH4_4g10740 Fragaria vesca HOM05D004212 ORTHO05D005128 1.0e-43 181.4 243 47.3
Thhalv10010577m.g Eutrema salsugineum HOM05D004212 ORTHO05D005128 1.4e-43 181.0 318 43.4
Nn2g13527 Nelumbo nucifera HOM05D004212 ORTHO05D005128 1.4e-43 181.0 261 45.2
AUR62015980 Chenopodium quinoa HOM05D004212 ORTHO05D005128 1.2e-42 177.9 310 42.3
BolC6t37364H Brassica oleracea HOM05D004212 ORTHO05D005128 1.5e-42 177.6 311 42.4
BcaC08g44655 Brassica carinata HOM05D004212 ORTHO05D005128 3.3e-42 176.4 311 42.4
C06p21750 Brassica napus HOM05D004212 ORTHO05D005128 3.3e-42 176.4 311 42.4
BraA07t29869Z Brassica rapa HOM05D004212 ORTHO05D005128 5.7e-42 175.6 311 42.8
Rhsim05G0199700 Rhododendron simsii HOM05D004212 ORTHO05D005128 1.3e-41 174.5 310 41.0
A07p21880 Brassica napus HOM05D004212 ORTHO05D005128 1.7e-41 174.1 311 42.4
Duzib093G0395 Durio zibethinus HOM05D004212 ORTHO05D005128 4.8e-41 172.6 304 40.1
BcaB02g07758 Brassica carinata HOM05D004212 ORTHO05D005128 1.8e-40 170.6 314 42.7
Hma1.2p1_0671F.1_g200560 Hydrangea macrophylla HOM05D004212 ORTHO05D005128 4.1e-40 169.5 309 39.5
Dinv35542 Davidia involucrata HOM05D004212 ORTHO05D005128 3.8e-38 162.9 262 42.7
Sp5g08430 Schrenkiella parvula HOM05D004212 ORTHO05D005128 3.8e-38 162.9 313 40.6
FAN05G0076 Fragaria x ananassa HOM05D004212 ORTHO05D005128 3.2e-37 159.8 331 37.5
Actinidia29168 Actinidia chinensis HOM05D004212 ORTHO05D005128 2.7e-36 156.8 313 40.6
FAN14G3630 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.7e-36 156.8 336 36.9
FvH4_6g12740 Fragaria vesca HOM05D004212 ORTHO05D005128 4.7e-36 156.0 331 37.2
Lj2C86T9 Lonicera japonica HOM05D004212 ORTHO05D005128 1.5e-34 151.0 293 38.9
SGA_v2.0_scaffold673G53429 Striga asiatica HOM05D004212 ORTHO05D005128 1.1e-32 144.8 242 41.7
SEGI_17127 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 1.4e-32 144.4 112 67.0
SEGI_10222 Sequoiadendron giganteum HOM05D004212 ORTHO05D005128 2.4e-32 143.7 200 46.5
Oeu021128.1 Olea europaea HOM05D004212 ORTHO05D005128 5.4e-32 142.5 401 30.2
RcHm_v2.0_Chr3g0464661 Rosa chinensis HOM05D004212 ORTHO05D005128 9.1e-32 141.7 328 36.6
A09p46880 Brassica napus HOM05D004212 ORTHO05D005128 7.5e-26 122.1 314 36.3
BraA09t40156Z Brassica rapa HOM05D004212 ORTHO05D005128 1.1e-24 118.2 325 35.1
CAN.G697.3 Capsicum annuum HOM05D004212 ORTHO05D005128 5.4e-24 115.9 199 41.2
PSO104G0021 Papaver somniferum HOM05D004212 ORTHO05D005128 5.9e-23 112.5 162 41.4
FAN09G1025 Fragaria x ananassa HOM05D004212 ORTHO05D005128 1.0e-22 111.7 151 43.7
PSO421G0231 Papaver somniferum HOM05D004212 ORTHO05D005128 1.3e-22 111.3 161 42.2
Lj4g0027540 Lotus japonicus HOM05D004212 ORTHO05D005128 2.9e-22 110.2 298 35.6
PSO104G0091 Papaver somniferum HOM05D004212 ORTHO05D005128 2.9e-22 110.2 175 40.6
PSO104G0005 Papaver somniferum HOM05D004212 ORTHO05D005128 5.0e-22 109.4 175 40.6
Duzib106G0220 Durio zibethinus HOM05D004212 ORTHO05D005128 8.6e-22 108.6 124 51.6
CAN.G697.2 Capsicum annuum HOM05D004212 ORTHO05D005128 1.1e-21 108.2 173 43.4
Carub.0003s2694 Capsella rubella HOM05D004212 ORTHO05D005128 2.5e-21 107.1 188 42.0
AagrBONN_evm.TU.Sc2ySwM_344.2315 Anthoceros agrestis HOM05D004212 ORTHO05D005128 7.3e-21 105.5 196 42.9
AL3G43180 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 2.1e-20 104.0 184 40.8
BcaB01g00227 Brassica carinata HOM05D004212 ORTHO05D005128 3.6e-20 103.2 245 36.3
RcHm_v2.0_Chr4g0419261 Rosa chinensis HOM05D004212 ORTHO05D005128 8.9e-19 98.6 222 36.0
Prupe.6G304800 Prunus persica HOM05D004212 ORTHO05D005128 2.0e-18 97.4 167 41.3
AL3G43230 Arabidopsis lyrata HOM05D004212 ORTHO05D005128 3.4e-18 96.7 174 40.2
AT1G48530 Arabidopsis thaliana HOM05D004212 ORTHO05D005128 4.4e-18 96.3 172 39.5
MD12G1200000 Malus domestica HOM05D004212 ORTHO05D005128 5.4e-16 89.4 175 37.7
BcaB02g08498 Brassica carinata HOM05D004212 ORTHO05D005128 5.9e-15 85.9 296 32.8
Lj3C960G5 Lonicera japonica HOM05D004212 ORTHO05D005128 2.3e-14 84.0 130 40.8
BolC8t50520H Brassica oleracea HOM05D004212 ORTHO05D005128 3.0e-14 83.6 290 31.7
BcaC07g39746 Brassica carinata HOM05D004212 ORTHO05D005128 3.9e-14 83.2 291 31.3
C08p29190 Brassica napus HOM05D004212 ORTHO05D005128 8.6e-14 82.0 290 31.4
MD17G1162600 Malus domestica HOM05D004212 ORTHO05D005128 3.3e-13 80.1 153 37.3
arahy.Tifrunner.gnm1.ann1.U24FMU Arachis hypogaea HOM05D004212 ORTHO05D005128 4.3e-13 79.7 107 44.9
SGA_v2.0_scaffold96G28918 Striga asiatica HOM05D004212 ORTHO05D005128 2.3e-11 73.9 72 54.2
arahy.Tifrunner.gnm1.ann1.MGHR3Z Arachis hypogaea HOM05D004212 ORTHO05D005128 6.8e-11 72.4 121 38.8
RcHm_v2.0_Chr4g0416021 Rosa chinensis HOM05D004212 ORTHO05D005128 6.8e-11 72.4 136 36.0
Cre07.g331000 Chlamydomonas reinhardtii HOM05D004212 ORTHO05D005128 6.4e-09 65.9 384 26.6
FAN02G2124 Fragaria x ananassa HOM05D004212 ORTHO05D005128 2.4e-08 63.9 81 46.9
BcaC02g09118 Brassica carinata HOM05D004212 ORTHO05D005128 1.2e-07 61.6 76 46.1


User provided reference genes

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