Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0012s0126 Marchantia polymorpha HOM05D005341 ORTHO05D006712 6.0e-177 624.0 304 100.0
Pp3c7_14500 Physcomitrium patens HOM05D005341 ORTHO05D006712 3.3e-98 362.5 297 60.6
ATR0564G155 Amborella trichopoda HOM05D005341 ORTHO05D006712 2.8e-97 359.4 288 60.8
Carub.0005s0045 Capsella rubella HOM05D005341 ORTHO05D006712 1.8e-96 356.7 279 60.2
ClCG11G001200 Citrullus lanatus HOM05D005341 ORTHO05D006712 2.3e-96 356.3 279 60.6
BolC2t11038H Brassica oleracea HOM05D005341 ORTHO05D006712 4.0e-96 355.5 279 61.3
THA.LOC104823806 Tarenaya hassleriana HOM05D005341 ORTHO05D006712 8.9e-96 354.4 279 61.3
Sed0016642 Sechium edule HOM05D005341 ORTHO05D006712 1.2e-95 354.0 286 60.1
Glyma.07G219300 Glycine max HOM05D005341 ORTHO05D006712 1.5e-95 353.6 270 61.5
A02p32060 Brassica napus HOM05D005341 ORTHO05D006712 2.6e-95 352.8 279 60.6
BraA02t08217Z Brassica rapa HOM05D005341 ORTHO05D006712 2.6e-95 352.8 279 60.6
Thhalv10000985m.g Eutrema salsugineum HOM05D005341 ORTHO05D006712 2.6e-95 352.8 279 59.9
Lalb_Chr16g0385061 Lupinus albus HOM05D005341 ORTHO05D006712 3.4e-95 352.4 287 58.2
Sp2g12940 Schrenkiella parvula HOM05D005341 ORTHO05D006712 3.4e-95 352.4 279 59.9
BcaC03g17044 Brassica carinata HOM05D005341 ORTHO05D006712 7.5e-95 351.3 279 60.2
C02p49590 Brassica napus HOM05D005341 ORTHO05D006712 7.5e-95 351.3 279 60.2
BcaB07g30394 Brassica carinata HOM05D005341 ORTHO05D006712 1.3e-94 350.5 279 60.2
CARHR144010 Cardamine hirsuta HOM05D005341 ORTHO05D006712 1.3e-94 350.5 279 59.9
CsaV3_5G013260 Cucumis sativus L. HOM05D005341 ORTHO05D006712 2.9e-94 349.4 286 59.1
Potri.006G222800 Populus trichocarpa HOM05D005341 ORTHO05D006712 3.7e-94 349.0 279 60.2
CAN.G1298.33 Capsicum annuum HOM05D005341 ORTHO05D006712 4.9e-94 348.6 284 59.5
PGR044G1964 Punica granatum HOM05D005341 ORTHO05D006712 4.9e-94 348.6 286 59.1
SMO358G0398 Selaginella moellendorffii HOM05D005341 ORTHO05D006712 4.9e-94 348.6 267 61.8
AL5G10480 Arabidopsis lyrata HOM05D005341 ORTHO05D006712 8.3e-94 347.8 280 59.3
Peaxi162Scf00159g01021 Petunia axillaris HOM05D005341 ORTHO05D006712 8.3e-94 347.8 290 58.3
MELO3C026795.2 Cucumis melo HOM05D005341 ORTHO05D006712 1.1e-93 347.4 286 58.7
Eucgr.B00057 Eucalyptus grandis HOM05D005341 ORTHO05D006712 1.1e-93 347.4 276 59.1
Manes.15G129000 Manihot esculenta HOM05D005341 ORTHO05D006712 1.9e-93 346.7 288 59.4
Glyma.20G017500 Glycine max HOM05D005341 ORTHO05D006712 2.4e-93 346.3 270 59.6
VMungo0251G3738 Vigna mungo HOM05D005341 ORTHO05D006712 4.1e-93 345.5 270 59.3
Hund24969 Selenicereus undatus HOM05D005341 ORTHO05D006712 5.4e-93 345.1 279 58.8
TPR.G38361 Trifolium pratense HOM05D005341 ORTHO05D006712 7.0e-93 344.7 280 57.5
AT2G01490 Arabidopsis thaliana HOM05D005341 ORTHO05D006712 9.2e-93 344.4 279 58.8
Cc11_g08490 Coffea canephora HOM05D005341 ORTHO05D006712 9.2e-93 344.4 279 59.5
Aa31LG2G8430 Aethionema arabicum HOM05D005341 ORTHO05D006712 1.2e-92 344.0 287 58.2
arahy.Tifrunner.gnm1.ann1.LQU7YY Arachis hypogaea HOM05D005341 ORTHO05D006712 2.0e-92 343.2 287 57.5
Ciclev10016178m.g Citrus clementina HOM05D005341 ORTHO05D006712 2.0e-92 343.2 286 58.7
COL.COLO4_13155 Corchorus olitorius HOM05D005341 ORTHO05D006712 2.0e-92 343.2 287 59.2
FAN22G2374 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.0e-92 343.2 287 57.5
Lj4g0007741 Lotus japonicus HOM05D005341 ORTHO05D006712 2.0e-92 343.2 280 57.5
Cre16.g673281 Chlamydomonas reinhardtii HOM05D005341 ORTHO05D006712 2.7e-92 342.8 280 58.2
FAN07G0561 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.8e-92 341.3 287 57.5
MD16G1026600 Malus domestica HOM05D005341 ORTHO05D006712 7.8e-92 341.3 287 57.5
RcHm_v2.0_Chr4g0441521 Rosa chinensis HOM05D005341 ORTHO05D006712 1.3e-91 340.5 287 57.1
Lsat_1_v5_gn_4_13500 Lactuca sativa HOM05D005341 ORTHO05D006712 1.7e-91 340.1 289 57.8
Atru.chr11.477 Acer truncatum HOM05D005341 ORTHO05D006712 2.3e-91 339.7 287 58.9
Cpa.g.sc65.157 Carica papaya HOM05D005341 ORTHO05D006712 2.3e-91 339.7 286 58.0
CDE05G0416 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.3e-91 339.7 281 58.7
FvH4_4g32640 Fragaria vesca HOM05D005341 ORTHO05D006712 3.0e-91 339.3 287 57.1
FAN12G2540 Fragaria x ananassa HOM05D005341 ORTHO05D006712 3.0e-91 339.3 287 57.1
QL01p001313 Quercus lobata HOM05D005341 ORTHO05D006712 3.0e-91 339.3 279 57.0
HPP92_005883 Vanilla planifolia HOM05D005341 ORTHO05D006712 3.0e-91 339.3 280 58.6
Nn4g24210 Nelumbo nucifera HOM05D005341 ORTHO05D006712 3.9e-91 339.0 279 58.8
Sc04g0005370 Simmondsia chinensis HOM05D005341 ORTHO05D006712 5.0e-91 338.6 269 59.5
Thecc.02G283300 Theobroma cacao HOM05D005341 ORTHO05D006712 6.6e-91 338.2 287 57.8
DCAR_007306 Daucus carota HOM05D005341 ORTHO05D006712 8.6e-91 337.8 289 56.7
PGSC0003DMG400018423 Solanum tuberosum HOM05D005341 ORTHO05D006712 8.6e-91 337.8 283 58.3
GSVIVG01011739001 Vitis vinifera HOM05D005341 ORTHO05D006712 8.6e-91 337.8 279 60.2
Duzib268G0076 Durio zibethinus HOM05D005341 ORTHO05D006712 1.1e-90 337.4 287 57.8
HanXRQChr17g0567271 Helianthus annuus HOM05D005341 ORTHO05D006712 1.1e-90 337.4 282 58.5
Sopen05g003820 Solanum pennellii HOM05D005341 ORTHO05D006712 1.1e-90 337.4 283 58.7
MSTRG.2162 Avicennia marina HOM05D005341 ORTHO05D006712 1.5e-90 337.0 282 58.5
Psat7g129280 Pisum sativum HOM05D005341 ORTHO05D006712 1.5e-90 337.0 280 56.1
Solyc05g007970.4 Solanum lycopersicum HOM05D005341 ORTHO05D006712 1.5e-90 337.0 283 58.3
unitig_27.g25178 Utricularia gibba HOM05D005341 ORTHO05D006712 2.5e-90 336.3 276 59.1
Medtr4g084560 Medicago truncatula HOM05D005341 ORTHO05D006712 7.3e-90 334.7 288 55.9
Nitab4.5_0000688g0150 Nicotiana tabacum HOM05D005341 ORTHO05D006712 7.3e-90 334.7 277 57.8
Gohir.D01G144400 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.2e-89 334.0 277 58.5
TWI31G1197 Tripterygium wilfordii HOM05D005341 ORTHO05D006712 1.2e-89 334.0 286 55.9
Ah.02g127780 Amaranthus hybridus HOM05D005341 ORTHO05D006712 1.6e-89 333.6 293 56.0
CSS0010642 Camellia sinensis var. sinensis HOM05D005341 ORTHO05D006712 2.1e-89 333.2 282 58.2
Gorai.002G178300 Gossypium raimondii HOM05D005341 ORTHO05D006712 2.1e-89 333.2 277 58.1
SEGI_27003 Sequoiadendron giganteum HOM05D005341 ORTHO05D006712 2.8e-89 332.8 269 58.0
MD13G1023900 Malus domestica HOM05D005341 ORTHO05D006712 3.6e-89 332.4 287 57.1
Dinv14419 Davidia involucrata HOM05D005341 ORTHO05D006712 6.2e-89 331.6 289 56.4
Duzib251G0346 Durio zibethinus HOM05D005341 ORTHO05D006712 6.2e-89 331.6 287 57.1
Prupe.1G326800 Prunus persica HOM05D005341 ORTHO05D006712 6.2e-89 331.6 287 56.4
Actinidia36662 Actinidia chinensis HOM05D005341 ORTHO05D006712 1.1e-88 330.9 289 56.7
Gohir.A01G151200 Gossypium hirsutum HOM05D005341 ORTHO05D006712 1.1e-88 330.9 288 56.9
TAR622G0920 Trochodendron aralioides HOM05D005341 ORTHO05D006712 1.1e-88 330.9 282 56.7
Oeu062657.1 Olea europaea HOM05D005341 ORTHO05D006712 8.9e-88 327.8 274 59.9
PSO478G3305 Papaver somniferum HOM05D005341 ORTHO05D006712 8.9e-88 327.8 288 56.6
EL10Ac3g06547 Beta vulgaris HOM05D005341 ORTHO05D006712 2.0e-87 326.6 265 58.5
Os03g0708100 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 2.0e-87 326.6 279 57.7
CiPaw.05G196000 Carya illinoinensis HOM05D005341 ORTHO05D006712 5.8e-87 325.1 269 56.9
Lj6A744T53 Lonicera japonica HOM05D005341 ORTHO05D006712 5.8e-87 325.1 290 55.9
AUR62039516 Chenopodium quinoa HOM05D005341 ORTHO05D006712 7.5e-87 324.7 261 58.6
PSO017G2475 Papaver somniferum HOM05D005341 ORTHO05D006712 7.5e-87 324.7 286 55.9
Os05g0473900 Oryza sativa ssp. japonica HOM05D005341 ORTHO05D006712 3.7e-86 322.4 279 57.3
AUR62014184 Chenopodium quinoa HOM05D005341 ORTHO05D006712 1.1e-85 320.9 253 60.1
Ca_18745_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.4e-85 320.5 280 55.4
Phvul.002G095700 Phaseolus vulgaris HOM05D005341 ORTHO05D006712 4.1e-85 318.9 242 61.2
SHI36659 Sapria himalayana HOM05D005341 ORTHO05D006712 1.2e-84 317.4 266 55.6
Aqoxy3G00085 Aquilegia oxysepala HOM05D005341 ORTHO05D006712 2.7e-84 316.2 315 50.5
BolC9t55880H Brassica oleracea HOM05D005341 ORTHO05D006712 1.7e-83 313.5 261 57.5
C09p30150 Brassica napus HOM05D005341 ORTHO05D006712 3.0e-83 312.8 254 58.3
CBR_g31524 Chara braunii HOM05D005341 ORTHO05D006712 5.1e-83 312.0 266 58.6
Sabra06G0172200 Salix brachista HOM05D005341 ORTHO05D006712 6.6e-83 311.6 315 50.5
ECA234G4311 Erigeron canadensis HOM05D005341 ORTHO05D006712 8.6e-83 311.2 282 54.6
Ca_29576_v3 Cicer arietinum L. HOM05D005341 ORTHO05D006712 1.1e-82 310.8 266 56.0
Migut.E00437 Erythranthe guttata HOM05D005341 ORTHO05D006712 2.5e-82 309.7 289 54.7
SalBow8G3124 Salvia bowleyana HOM05D005341 ORTHO05D006712 4.3e-82 308.9 287 53.3
SalBow8G3488 Salvia bowleyana HOM05D005341 ORTHO05D006712 4.3e-82 308.9 287 53.3
MCO03G480 Micromonas commoda HOM05D005341 ORTHO05D006712 2.8e-81 306.2 289 55.0
CANSAT25G0384 Cannabis sativa HOM05D005341 ORTHO05D006712 6.2e-81 305.1 244 61.5
Zm00001eb054520 Zea mays HOM05D005341 ORTHO05D006712 1.1e-80 304.3 267 56.6
SGA_v2.0_scaffold39G15193 Striga asiatica HOM05D005341 ORTHO05D006712 1.3e-78 297.4 243 58.4
Rhsim09G0096600 Rhododendron simsii HOM05D005341 ORTHO05D006712 4.1e-77 292.4 301 49.2
BcaC04g21581 Brassica carinata HOM05D005341 ORTHO05D006712 2.5e-74 283.1 251 55.0
MBI12_g12675_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 2.4e-72 276.6 191 64.4
PRCOL_00000921 Prasinoderma coloniale HOM05D005341 ORTHO05D006712 7.6e-71 271.6 311 48.2
Zm00001eb216580 Zea mays HOM05D005341 ORTHO05D006712 3.1e-64 249.6 270 48.5
AagrBONN_evm.TU.Sc2ySwM_228.566 Anthoceros agrestis HOM05D005341 ORTHO05D006712 1.3e-62 244.2 176 62.5
Zm00001eb409650 Zea mays HOM05D005341 ORTHO05D006712 1.0e-59 234.6 168 61.3
Zm00001eb142690 Zea mays HOM05D005341 ORTHO05D006712 6.6e-59 231.9 168 60.7
Zm00001eb341930 Zea mays HOM05D005341 ORTHO05D006712 2.8e-57 226.5 167 60.5
Cfa022618 Carpinus fangiana HOM05D005341 ORTHO05D006712 6.9e-56 221.9 292 43.2
vmacro10652 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 9.9e-55 218.0 430 34.7
vmacro10649 Vaccinium macrocarpon HOM05D005341 ORTHO05D006712 6.7e-51 205.3 414 33.8
AagrBONN_evm.TU.Sc2ySwM_117.3795 Anthoceros agrestis HOM05D005341 ORTHO05D006712 4.3e-50 202.6 154 59.7
Zm00001eb184170 Zea mays HOM05D005341 ORTHO05D006712 1.3e-49 201.1 146 61.6
Oeu018602.1 Olea europaea HOM05D005341 ORTHO05D006712 2.4e-48 196.8 148 60.8
FAN17G2406 Fragaria x ananassa HOM05D005341 ORTHO05D006712 2.5e-45 186.8 134 66.4
unitig_29.g31871 Utricularia gibba HOM05D005341 ORTHO05D006712 8.2e-41 171.8 301 34.9
Haze_27483 Corylus avellana HOM05D005341 ORTHO05D006712 9.0e-40 168.3 232 38.8
A09p23410 Brassica napus HOM05D005341 ORTHO05D006712 1.2e-39 167.9 252 40.1
Haze_10984 Corylus avellana HOM05D005341 ORTHO05D006712 4.2e-37 159.5 145 54.5
BraA09t37941Z Brassica rapa HOM05D005341 ORTHO05D006712 1.5e-31 141.0 251 37.1
Haze_10982 Corylus avellana HOM05D005341 ORTHO05D006712 5.0e-30 136.0 98 58.2
FvH4_3g28840 Fragaria vesca HOM05D005341 ORTHO05D006712 6.5e-22 109.0 80 60.0
FAN18G3043 Fragaria x ananassa HOM05D005341 ORTHO05D006712 7.2e-21 105.5 75 61.3
FAN24G2017 Fragaria x ananassa HOM05D005341 ORTHO05D006712 9.4e-21 105.1 76 60.5
BcaB07g30743 Brassica carinata HOM05D005341 ORTHO05D006712 1.8e-19 100.9 113 46.0
FAN01G1793 Fragaria x ananassa HOM05D000061 ORTHO05D003487 1.8e-19 100.9 97 50.5
RcHm_v2.0_Chr6g0283021 Rosa chinensis HOM05D006769 ORTHO05D008522 2.2e-17 94.0 72 56.9
Zm00001eb025440 Zea mays HOM05D005341 ORTHO05D006712 3.5e-15 86.7 66 54.5
Zm00001eb049700 Zea mays HOM05D005341 ORTHO05D006712 3.5e-15 86.7 66 54.5
CAN.G651.12 Capsicum annuum HOM05D005428 ORTHO05D006876 1.5e-13 81.3 76 50.0
MBI12_g12674_MAGBIO Magnolia biondii HOM05D005341 ORTHO05D006712 9.1e-08 62.0 83 45.8
CDE11G1102 Ceratophyllum demersum HOM05D005341 ORTHO05D006712 2.2e-06 57.4 86 36.0
FAN21G0384 Fragaria x ananassa HOM05D005341 ORTHO05D006712 6.5e-06 55.8 85 40.0


User provided reference genes

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