Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0012s0107 Marchantia polymorpha HOM05D005490 ORTHO05D006606 2.9e-214 748.8 464 100.0
PGSC0003DMG400004042 Solanum tuberosum HOM05D005490 ORTHO05D006606 9.5e-117 424.9 467 53.1
Solyc02g090850.3 Solanum lycopersicum HOM05D005490 ORTHO05D006606 1.2e-116 424.5 467 52.9
Nn5g30300 Nelumbo nucifera HOM05D005490 ORTHO05D006606 4.7e-116 422.5 466 56.9
CAN.G660.7 Capsicum annuum HOM05D005490 ORTHO05D006606 6.1e-116 422.2 467 53.5
Lalb_Chr05g0213291 Lupinus albus HOM05D005490 ORTHO05D006606 6.1e-116 422.2 469 55.7
CiPaw.01G018200 Carya illinoinensis HOM05D005490 ORTHO05D006606 6.8e-115 418.7 467 54.2
Dinv29986 Davidia involucrata HOM05D005490 ORTHO05D006606 2.0e-114 417.2 471 54.1
CANSAT01G1717 Cannabis sativa HOM05D005490 ORTHO05D006606 2.2e-113 413.7 468 53.8
RcHm_v2.0_Chr2g0105671 Rosa chinensis HOM05D005490 ORTHO05D006606 2.2e-113 413.7 468 54.3
Hma1.2p1_0461F.1_g157810 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 2.9e-113 413.3 468 53.0
Prupe.7G133300 Prunus persica HOM05D005490 ORTHO05D006606 3.7e-113 412.9 468 52.4
Actinidia03792 Actinidia chinensis HOM05D005490 ORTHO05D006606 1.1e-112 411.4 468 54.5
GSVIVG01022130001 Vitis vinifera HOM05D005490 ORTHO05D006606 1.4e-112 411.0 466 53.2
Potri.007G044100 Populus trichocarpa HOM05D005490 ORTHO05D006606 2.4e-112 410.2 469 55.9
Nitab4.5_0002016g0110 Nicotiana tabacum HOM05D005490 ORTHO05D006606 5.4e-112 409.1 468 52.4
VMungo1215G3252 Vigna mungo HOM05D005490 ORTHO05D006606 5.4e-112 409.1 470 55.3
Phvul.002G018900 Phaseolus vulgaris HOM05D005490 ORTHO05D006606 2.0e-111 407.1 469 55.2
Lj2g0003149 Lotus japonicus HOM05D005490 ORTHO05D006606 2.7e-111 406.8 469 54.8
Manes.12G106800 Manihot esculenta HOM05D005490 ORTHO05D006606 6.0e-111 405.6 470 55.3
PSO210G6251 Papaver somniferum HOM05D005490 ORTHO05D006606 6.0e-111 405.6 467 54.6
TPR.G30705 Trifolium pratense HOM05D005490 ORTHO05D006606 6.0e-111 405.6 467 55.5
TWI09G1398 Tripterygium wilfordii HOM05D005490 ORTHO05D006606 6.0e-111 405.6 468 54.1
Glyma.01G186000 Glycine max HOM05D005490 ORTHO05D006606 7.8e-111 405.2 468 54.3
Medtr5g017430 Medicago truncatula HOM05D005490 ORTHO05D006606 1.7e-110 404.1 466 54.9
arahy.Tifrunner.gnm1.ann1.JF37M9 Arachis hypogaea HOM05D005490 ORTHO05D006606 3.0e-110 403.3 466 53.6
PSO170G3823 Papaver somniferum HOM05D005490 ORTHO05D006606 5.0e-110 402.5 467 53.5
Ca_24770_v3 Cicer arietinum L. HOM05D005490 ORTHO05D006606 6.6e-110 402.1 464 55.0
Gohir.D11G199100 Gossypium hirsutum HOM05D005490 ORTHO05D006606 8.6e-110 401.7 465 52.9
QL06p041379 Quercus lobata HOM05D005490 ORTHO05D006606 1.1e-109 401.4 501 52.1
Glyma.11G056000 Glycine max HOM05D005490 ORTHO05D006606 2.5e-109 400.2 471 55.0
Cc07_g05990 Coffea canephora HOM05D005490 ORTHO05D006606 9.5e-109 398.3 467 54.2
Gorai.007G213300 Gossypium raimondii HOM05D005490 ORTHO05D006606 1.2e-108 397.9 463 52.7
CsaV3_2G016660 Cucumis sativus L. HOM05D005490 ORTHO05D006606 1.1e-107 394.8 470 53.2
Os03g0395900 Oryza sativa ssp. japonica HOM05D005490 ORTHO05D006606 1.8e-107 394.0 467 52.9
Oeu062437.1 Olea europaea HOM05D005490 ORTHO05D006606 2.3e-107 393.7 467 55.0
DCAR_025733 Daucus carota HOM05D005490 ORTHO05D006606 3.1e-107 393.3 489 50.3
FAN28G1226 Fragaria x ananassa HOM05D005490 ORTHO05D006606 4.0e-107 392.9 482 52.1
Thecc.01G056300 Theobroma cacao HOM05D005490 ORTHO05D006606 4.0e-107 392.9 467 53.1
Gohir.A11G192400 Gossypium hirsutum HOM05D005490 ORTHO05D006606 6.8e-107 392.1 463 52.3
Ciclev10025320m.g Citrus clementina HOM05D005490 ORTHO05D006606 8.9e-107 391.7 467 53.3
Lj7A69T47 Lonicera japonica HOM05D005490 ORTHO05D006606 8.9e-107 391.7 504 50.2
Cfa004023 Carpinus fangiana HOM05D005490 ORTHO05D006606 1.2e-106 391.3 467 53.1
Oeu031525.2 Olea europaea HOM05D005490 ORTHO05D006606 1.2e-106 391.3 468 53.6
Sabra07G0038800 Salix brachista HOM05D005490 ORTHO05D006606 1.2e-106 391.3 519 50.5
Sc03g0001580 Simmondsia chinensis HOM05D005490 ORTHO05D006606 4.4e-106 389.4 467 52.9
FAN19G0012 Fragaria x ananassa HOM05D005490 ORTHO05D006606 7.5e-106 388.7 482 51.9
Psat2g166360 Pisum sativum HOM05D005490 ORTHO05D006606 9.8e-106 388.3 466 53.2
arahy.Tifrunner.gnm1.ann1.5GG3L5 Arachis hypogaea HOM05D005490 ORTHO05D006606 1.7e-105 387.5 495 50.5
COL.COLO4_11415 Corchorus olitorius HOM05D005490 ORTHO05D006606 1.7e-105 387.5 462 53.2
HanXRQChr14g0442791 Helianthus annuus HOM05D005490 ORTHO05D006606 1.7e-105 387.5 464 54.1
AL7G13750 Arabidopsis lyrata HOM05D005490 ORTHO05D006606 4.9e-105 386.0 468 53.4
ECA238G0711 Erigeron canadensis HOM05D005490 ORTHO05D006606 6.4e-105 385.6 473 54.1
A01p01850 Brassica napus HOM05D005490 ORTHO05D006606 1.9e-104 384.0 469 52.2
BraA01t00174Z Brassica rapa HOM05D005490 ORTHO05D006606 1.9e-104 384.0 469 52.2
AT4G36980 Arabidopsis thaliana HOM05D005490 ORTHO05D006606 4.1e-104 382.9 469 52.7
Hund16323 Selenicereus undatus HOM05D005490 ORTHO05D006606 4.1e-104 382.9 467 52.0
Migut.H00433 Erythranthe guttata HOM05D005490 ORTHO05D006606 7.1e-104 382.1 470 53.8
Sed0007368 Sechium edule HOM05D005490 ORTHO05D006606 1.2e-103 381.3 471 52.9
Duzib187G0068 Durio zibethinus HOM05D005490 ORTHO05D006606 2.1e-103 380.6 476 52.1
SGA_v2.0_scaffold15G07303 Striga asiatica HOM05D005490 ORTHO05D006606 1.0e-102 378.3 467 51.0
Carub.0007s0317 Capsella rubella HOM05D005490 ORTHO05D006606 1.3e-102 377.9 468 52.6
CDE08G0045 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 1.3e-102 377.9 478 50.2
EL10Ac6g15745 Beta vulgaris HOM05D005490 ORTHO05D006606 3.0e-102 376.7 484 51.7
C01p01990 Brassica napus HOM05D005490 ORTHO05D006606 6.6e-102 375.6 469 50.7
CDE06G1923 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 8.6e-102 375.2 467 52.2
Lsat_1_v5_gn_2_84101 Lactuca sativa HOM05D005490 ORTHO05D006606 1.1e-101 374.8 492 49.4
ATR1102G026 Amborella trichopoda HOM05D005490 ORTHO05D006606 2.5e-101 373.6 465 55.1
TAR381G1106 Trochodendron aralioides HOM05D005490 ORTHO05D006606 5.6e-101 372.5 402 56.2
Pp3c11_20900 Physcomitrium patens HOM05D005490 ORTHO05D006606 9.5e-101 371.7 435 56.3
Aa31LG6G13990 Aethionema arabicum HOM05D005490 ORTHO05D006606 2.1e-100 370.5 482 50.2
BcaNung02520 Brassica carinata HOM05D005490 ORTHO05D006606 2.1e-100 370.5 470 50.6
THA.LOC104804216 Tarenaya hassleriana HOM05D005490 ORTHO05D006606 2.3e-99 367.1 470 50.2
Aqoxy5G01229 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 5.2e-99 365.9 380 55.8
MD02G1172000 Malus domestica HOM05D005490 ORTHO05D006606 5.2e-99 365.9 381 55.6
Sp7g34780 Schrenkiella parvula HOM05D005490 ORTHO05D006606 5.2e-99 365.9 468 51.3
Pp3c7_5520 Physcomitrium patens HOM05D005490 ORTHO05D006606 6.8e-99 365.5 476 50.6
CARHR245520 Cardamine hirsuta HOM05D005490 ORTHO05D006606 8.9e-99 365.2 467 53.5
BolC1t00193H Brassica oleracea HOM05D005490 ORTHO05D006606 1.2e-98 364.8 480 49.4
CSS0049924 Camellia sinensis var. sinensis HOM05D005490 ORTHO05D006606 5.8e-98 362.5 470 50.0
Gorai.003G025100 Gossypium raimondii HOM05D005490 ORTHO05D006606 7.5e-98 362.1 467 50.7
Thhalv10025018m.g Eutrema salsugineum HOM05D005490 ORTHO05D006606 1.3e-97 361.3 467 51.4
Gohir.A02G157300 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.7e-97 360.9 466 50.4
AUR62001928 Chenopodium quinoa HOM05D005490 ORTHO05D006606 2.2e-97 360.5 494 49.4
ClCG02G012530 Citrullus lanatus HOM05D005490 ORTHO05D006606 2.9e-97 360.1 467 51.0
Potri.005G138200 Populus trichocarpa HOM05D005490 ORTHO05D006606 4.1e-96 356.3 381 55.1
Gohir.D03G023600 Gossypium hirsutum HOM05D005490 ORTHO05D006606 1.7e-94 350.9 466 50.4
FAN26G0668 Fragaria x ananassa HOM05D005490 ORTHO05D006606 8.1e-92 342.0 395 52.2
HPP92_004114 Vanilla planifolia HOM05D005490 ORTHO05D006606 5.4e-88 329.3 467 48.0
FAN23G2111 Fragaria x ananassa HOM05D005490 ORTHO05D006606 3.9e-86 323.2 398 51.0
Peaxi162Scf00450g00420 Petunia axillaris HOM05D005490 ORTHO05D006606 2.9e-81 307.0 464 43.8
AUR62003882 Chenopodium quinoa HOM05D005490 ORTHO05D006606 7.8e-79 298.9 491 44.2
Ah.03g145080 Amaranthus hybridus HOM05D005490 ORTHO05D006606 9.0e-75 285.4 403 49.4
unitig_899.g14662 Utricularia gibba HOM05D005490 ORTHO05D006606 6.4e-73 279.3 381 48.8
Nitab4.5_0002440g0010 Nicotiana tabacum HOM05D005490 ORTHO05D006606 1.1e-69 268.5 467 39.8
SMO356G0652 Selaginella moellendorffii HOM05D005490 ORTHO05D006606 8.4e-65 252.3 245 58.8
Sabra05G0112300 Salix brachista HOM05D005490 ORTHO05D006606 6.0e-63 246.1 494 39.5
SEGI_00791 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 2.5e-61 240.7 154 75.3
Rhsim08G0100400 Rhododendron simsii HOM05D005490 ORTHO05D006606 1.6e-60 238.0 468 40.4
SEGI_41077 Sequoiadendron giganteum HOM05D005490 ORTHO05D006606 2.6e-58 230.7 307 56.7
MD15G1284300 Malus domestica HOM05D005490 ORTHO05D006606 6.1e-55 219.5 339 44.5
Atru.chr3.327 Acer truncatum HOM05D005490 ORTHO05D006606 6.9e-51 206.1 325 47.4
Hma1.2p1_0461F.1_g157800 Hydrangea macrophylla HOM05D005490 ORTHO05D006606 6.9e-51 206.1 334 44.6
FvH4_1g16060 Fragaria vesca HOM05D005490 ORTHO05D006606 1.2e-50 205.3 327 45.9
Eucgr.I00926 Eucalyptus grandis HOM05D005490 ORTHO05D006606 5.5e-48 196.4 329 42.9
Atru.chr3.328 Acer truncatum HOM05D005490 ORTHO05D006606 7.2e-48 196.1 128 75.0
CBR_g38045 Chara braunii HOM05D005490 ORTHO05D000004 1.6e-47 194.9 424 43.9
MELO3C020875.2 Cucumis melo HOM05D005490 ORTHO05D006606 7.9e-47 192.6 329 45.6
Cpa.g.sc55.148 Carica papaya HOM05D005490 ORTHO05D006606 1.0e-46 192.2 128 72.7
Dinv39848 Davidia involucrata HOM05D005490 ORTHO05D006606 8.2e-44 182.6 262 50.0
AagrBONN_evm.TU.Sc2ySwM_344.4468 Anthoceros agrestis HOM05D005490 ORTHO05D006606 1.8e-43 181.4 476 36.3
MD15G1284200 Malus domestica HOM05D005490 ORTHO05D006606 1.2e-42 178.7 128 71.9
vmacro17955 Vaccinium macrocarpon HOM05D005490 ORTHO05D006606 4.5e-42 176.8 361 41.3
HPP92_004074 Vanilla planifolia HOM05D005490 ORTHO05D006606 1.7e-41 174.9 340 42.9
Sopen02g035470 Solanum pennellii HOM05D005490 ORTHO05D006606 2.9e-41 174.1 247 45.3
Actinidia16484 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.2e-32 143.7 84 78.6
Zm00001eb019290 Zea mays HOM05D005490 ORTHO05D006606 1.2e-31 142.1 256 46.5
Actinidia16483 Actinidia chinensis HOM05D005490 ORTHO05D006606 7.0e-27 126.3 307 35.5
Haze_15401 Corylus avellana HOM05D005490 ORTHO05D006606 2.1e-23 114.8 218 43.6
Haze_15403 Corylus avellana HOM05D005490 ORTHO05D006606 2.1e-23 114.8 218 44.0
Actinidia36493 Actinidia chinensis HOM05D005490 ORTHO05D006606 4.7e-23 113.6 356 34.3
VMungo1309G0325 Vigna mungo HOM05D005490 ORTHO05D006606 7.0e-19 99.8 158 39.2
FAN22G1581 Fragaria x ananassa HOM05D005490 ORTHO05D006606 7.7e-18 96.3 72 61.1
SHI08459 Sapria himalayana HOM05D005490 ORTHO05D006606 1.7e-17 95.1 66 66.7
FAN17G2271 Fragaria x ananassa HOM05D005490 ORTHO05D006606 2.5e-16 91.3 66 63.6
VMungo0720G1861 Vigna mungo HOM05D005490 ORTHO05D006606 7.2e-16 89.7 141 39.0
FAN17G1267 Fragaria x ananassa HOM05D005490 ORTHO05D006606 1.5e-13 82.0 64 62.5
Cre12.g498350 Chlamydomonas reinhardtii HOM05D005490 ORTHO05D006606 2.4e-11 74.7 284 28.5
Atru.chr10.1611 Acer truncatum HOM05D005490 ORTHO05D006606 1.1e-08 65.9 50 60.0
CDE08G1038 Ceratophyllum demersum HOM05D005490 ORTHO05D006606 4.2e-08 63.9 38 71.1
VMungo0251G2361 Vigna mungo HOM05D007793 ORTHO05D010104 1.2e-07 62.4 86 37.2
Aqoxy5G01228 Aquilegia oxysepala HOM05D005490 ORTHO05D006606 2.1e-07 61.6 90 47.8
VMungo1309G1585 Vigna mungo HOM05D005490 ORTHO05D006606 2.1e-07 61.6 84 39.3


User provided reference genes

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