Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0012s0096 Marchantia polymorpha HOM05D001081 ORTHO05D007101 5.3e-54 214.2 113 100.0
Pp3c15_6340 Physcomitrium patens HOM05D001081 ORTHO05D007101 1.8e-33 146.0 92 79.3
Peaxi162Scf00071g00017 Petunia axillaris HOM05D001081 ORTHO05D007101 7.8e-29 130.6 102 63.7
MSTRG.22347 Avicennia marina HOM05D001081 ORTHO05D007101 2.3e-28 129.0 102 63.7
unitig_32.g11232 Utricularia gibba HOM05D001081 ORTHO05D007101 2.9e-28 128.6 98 66.3
SGA_v2.0_scaffold19G08564 Striga asiatica HOM05D001081 ORTHO05D007101 1.1e-27 126.7 102 62.7
TPR.G9557 Trifolium pratense HOM05D001081 ORTHO05D007101 1.1e-27 126.7 98 65.3
Migut.N03179 Erythranthe guttata HOM05D001081 ORTHO05D007101 1.9e-27 125.9 102 63.7
Ciclev10022846m.g Citrus clementina HOM05D001081 ORTHO05D007101 2.5e-27 125.6 98 64.3
SalBow6G0310 Salvia bowleyana HOM05D001081 ORTHO05D007101 2.5e-27 125.6 102 63.7
EL10Ac1g00785 Beta vulgaris HOM05D001081 ORTHO05D007101 3.3e-27 125.2 102 61.8
SGA_v2.0_scaffold25G11207 Striga asiatica HOM05D001081 ORTHO05D007101 3.3e-27 125.2 102 60.8
Hund21005 Selenicereus undatus HOM05D001081 ORTHO05D007101 5.6e-27 124.4 103 62.1
Nitab4.5_0004146g0010 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.3e-27 124.0 102 60.8
Nitab4.5_0004513g0030 Nicotiana tabacum HOM05D001081 ORTHO05D007101 7.3e-27 124.0 102 59.8
Ah.03g146510 Amaranthus hybridus HOM05D001081 ORTHO05D007101 1.6e-26 122.9 102 59.8
THA.LOC104798899 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.6e-26 122.9 108 61.1
Glyma.05G143900 Glycine max HOM05D001081 ORTHO05D007101 2.1e-26 122.5 98 63.3
Psat7g080240 Pisum sativum HOM05D001081 ORTHO05D007101 2.1e-26 122.5 98 62.2
AUR62018052 Chenopodium quinoa HOM05D001081 ORTHO05D007101 2.8e-26 122.1 103 62.1
Lj5g0017992 Lotus japonicus HOM05D001081 ORTHO05D007101 2.8e-26 122.1 103 62.1
Potri.015G012700 Populus trichocarpa HOM05D001081 ORTHO05D007101 2.8e-26 122.1 98 62.2
Ah.05g173160 Amaranthus hybridus HOM05D001081 ORTHO05D007101 3.6e-26 121.7 102 58.8
Ca_18157_v3 Cicer arietinum L. HOM05D001081 ORTHO05D007101 3.6e-26 121.7 98 62.2
ECA238G0006 Erigeron canadensis HOM05D001081 ORTHO05D007101 3.6e-26 121.7 97 61.9
Lj4P697T30 Lonicera japonica HOM05D001081 ORTHO05D007101 3.6e-26 121.7 97 61.9
Lj4g0009093 Lotus japonicus HOM05D001081 ORTHO05D007101 3.6e-26 121.7 103 61.2
Sc13g0009920 Simmondsia chinensis HOM05D001081 ORTHO05D007101 4.7e-26 121.3 103 60.2
TAR625G0271 Trochodendron aralioides HOM05D001081 ORTHO05D007101 4.7e-26 121.3 103 60.2
VMungo0251G0734 Vigna mungo HOM05D001081 ORTHO05D007101 4.7e-26 121.3 98 62.2
AUR62023429 Chenopodium quinoa HOM05D001081 ORTHO05D007101 6.1e-26 120.9 103 61.2
Glyma.08G100200 Glycine max HOM05D001081 ORTHO05D007101 6.1e-26 120.9 98 62.2
Nn3g16671 Nelumbo nucifera HOM05D001081 ORTHO05D007101 6.1e-26 120.9 103 59.2
Zm00001eb355650 Zea mays HOM05D001081 ORTHO05D007101 6.1e-26 120.9 100 61.0
Lalb_Chr13g0294051 Lupinus albus HOM05D001081 ORTHO05D007101 8.0e-26 120.6 98 61.2
Nn6g34886 Nelumbo nucifera HOM05D001081 ORTHO05D007101 8.0e-26 120.6 103 59.2
Phvul.001G061700 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 8.0e-26 120.6 98 62.2
PGSC0003DMG401028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.0e-26 120.6 102 57.8
PGSC0003DMG402028646 Solanum tuberosum HOM05D001081 ORTHO05D007101 8.0e-26 120.6 102 57.8
CAN.G411.51 Capsicum annuum HOM05D001081 ORTHO05D007101 1.0e-25 120.2 102 57.8
AUR62013725 Chenopodium quinoa HOM05D001081 ORTHO05D007101 1.0e-25 120.2 98 63.3
Os05g0114600 Oryza sativa ssp. japonica HOM05D001081 ORTHO05D007101 1.0e-25 120.2 98 61.2
Phvul.003G125501 Phaseolus vulgaris HOM05D001081 ORTHO05D007101 1.0e-25 120.2 98 62.2
Sopen12g021840 Solanum pennellii HOM05D001081 ORTHO05D007101 1.0e-25 120.2 102 56.9
Eucgr.F01156 Eucalyptus grandis HOM05D001081 ORTHO05D007101 1.4e-25 119.8 104 59.6
Sopen12g021900 Solanum pennellii HOM05D001081 ORTHO05D007101 1.4e-25 119.8 102 56.9
Duzib068G1165 Durio zibethinus HOM05D001081 ORTHO05D007101 1.8e-25 119.4 98 61.2
MD07G1288300 Malus domestica HOM05D001081 ORTHO05D007101 1.8e-25 119.4 98 62.2
Medtr8g079498 Medicago truncatula HOM05D001081 ORTHO05D007101 1.8e-25 119.4 98 62.2
THA.LOC104823111 Tarenaya hassleriana HOM05D001081 ORTHO05D007101 1.8e-25 119.4 108 59.3
COL.COLO4_16767 Corchorus olitorius HOM05D001081 ORTHO05D007101 2.3e-25 119.0 98 61.2
Duzib205G0894 Durio zibethinus HOM05D001081 ORTHO05D007101 2.3e-25 119.0 98 61.2
HanXRQChr14g0429651 Helianthus annuus HOM05D001081 ORTHO05D007101 2.3e-25 119.0 97 59.8
Potri.012G015800 Populus trichocarpa HOM05D001081 ORTHO05D007101 3.0e-25 118.6 98 60.2
PSO541G4732 Papaver somniferum HOM05D001081 ORTHO05D007101 4.0e-25 118.2 103 59.2
PSO675G3624 Papaver somniferum HOM05D001081 ORTHO05D007101 4.0e-25 118.2 103 59.2
PGR083G2221 Punica granatum HOM05D001081 ORTHO05D007101 4.0e-25 118.2 104 58.7
QL09p008866 Quercus lobata HOM05D001081 ORTHO05D007101 4.0e-25 118.2 98 59.2
QL09p009112 Quercus lobata HOM05D001081 ORTHO05D007101 4.0e-25 118.2 98 59.2
SEGI_15379 Sequoiadendron giganteum HOM05D001081 ORTHO05D007101 4.0e-25 118.2 102 57.8
Aqoxy4G03008 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 5.2e-25 117.9 103 58.3
Sed0012325 Sechium edule HOM05D001081 ORTHO05D007101 5.2e-25 117.9 98 61.2
TWI74G0183 Tripterygium wilfordii HOM05D001081 ORTHO05D007101 5.2e-25 117.9 103 57.3
CiPaw.06G046200 Carya illinoinensis HOM05D001081 ORTHO05D007101 6.8e-25 117.5 98 60.2
vmacro12512 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 6.8e-25 117.5 103 58.3
Atru.chr12.2201 Acer truncatum HOM05D001081 ORTHO05D007101 8.9e-25 117.1 99 61.6
Aqoxy3G01434 Aquilegia oxysepala HOM05D001081 ORTHO05D007101 8.9e-25 117.1 103 58.3
Lsat_1_v5_gn_2_7800 Lactuca sativa HOM05D000015 ORTHO05D002445 8.9e-25 117.1 97 58.8
Manes.18G126800 Manihot esculenta HOM05D001081 ORTHO05D007101 8.9e-25 117.1 103 58.3
Cpa.g.sc3.88 Carica papaya HOM05D001081 ORTHO05D007101 1.2e-24 116.7 98 60.2
RcHm_v2.0_Chr1g0380551 Rosa chinensis HOM05D001081 ORTHO05D007101 1.2e-24 116.7 98 60.2
CANSAT21G1508 Cannabis sativa HOM05D001081 ORTHO05D007101 1.5e-24 116.3 98 60.2
CDE05G3015 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 1.5e-24 116.3 103 58.3
Cc10_g01340 Coffea canephora HOM05D001081 ORTHO05D007101 2.0e-24 115.9 102 56.9
Prupe.2G309800 Prunus persica HOM05D001081 ORTHO05D007101 2.0e-24 115.9 98 62.2
Gohir.A05G100100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 2.6e-24 115.5 98 58.2
Solyc12g042700.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 2.6e-24 115.5 102 54.9
HPP92_008968 Vanilla planifolia HOM05D001081 ORTHO05D007101 2.6e-24 115.5 103 57.3
Thecc.03G199300 Theobroma cacao HOM05D001081 ORTHO05D007101 3.4e-24 115.2 98 58.2
Cfa016232 Carpinus fangiana HOM05D001081 ORTHO05D007101 4.4e-24 114.8 98 58.2
GSVIVG01009969001 Vitis vinifera HOM05D001081 ORTHO05D007101 4.4e-24 114.8 103 56.3
CARHR228810 Cardamine hirsuta HOM05D001081 ORTHO05D007101 5.7e-24 114.4 108 57.4
CsaV3_3G019840 Cucumis sativus L. HOM05D001081 ORTHO05D007101 5.7e-24 114.4 95 61.1
MELO3C008496.2 Cucumis melo HOM05D001081 ORTHO05D007101 7.5e-24 114.0 95 61.1
MBI07_g23667_MAGBIO Magnolia biondii HOM05D001081 ORTHO05D007101 7.5e-24 114.0 103 55.3
FvH4_7g31560 Fragaria vesca HOM05D001081 ORTHO05D007101 9.8e-24 113.6 98 59.2
FAN01G2588 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.8e-24 113.6 98 59.2
FAN06G0656 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.8e-24 113.6 98 59.2
FAN10G3364 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.8e-24 113.6 98 59.2
FAN10G4231 Fragaria x ananassa HOM05D001081 ORTHO05D007101 9.8e-24 113.6 98 59.2
Gohir.D05G099900 Gossypium hirsutum HOM05D001081 ORTHO05D007101 9.8e-24 113.6 98 57.1
Gorai.009G103900 Gossypium raimondii HOM05D001081 ORTHO05D007101 9.8e-24 113.6 98 57.1
Carub.0007s1934 Capsella rubella HOM05D001081 ORTHO05D007101 1.3e-23 113.2 108 56.5
DCAR_013886 Daucus carota HOM05D001081 ORTHO05D007101 1.7e-23 112.8 97 58.8
FAN03G0412 Fragaria x ananassa HOM05D001081 ORTHO05D007101 1.7e-23 112.8 98 59.2
Sed0024875 Sechium edule HOM05D001081 ORTHO05D007101 2.2e-23 112.5 98 59.2
Haze_00208 Corylus avellana HOM05D001081 ORTHO05D004708 2.9e-23 112.1 98 57.1
vmacro07565 Vaccinium macrocarpon HOM05D001081 ORTHO05D007101 3.7e-23 111.7 103 55.3
Aa31LG6G3950 Aethionema arabicum HOM05D001081 ORTHO05D007101 4.9e-23 111.3 108 57.4
AL7G31700 Arabidopsis lyrata HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
AT4G22000 Arabidopsis thaliana HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
BcaC09g51172 Brassica carinata HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
BcaNung05107 Brassica carinata HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
A01p13390 Brassica napus HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
C01p16100 Brassica napus HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
BolC1t01570H Brassica oleracea HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
BraA01t01281Z Brassica rapa HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
Thhalv10026223m.g Eutrema salsugineum HOM05D001081 ORTHO05D007101 6.4e-23 110.9 108 56.5
FAN06G3917 Fragaria x ananassa HOM05D001081 ORTHO05D007101 6.4e-23 110.9 98 58.2
TAR381G1700 Trochodendron aralioides HOM05D001081 ORTHO05D007101 6.4e-23 110.9 103 55.3
SHI02421 Sapria himalayana HOM05D006156 ORTHO05D007101 8.3e-23 110.5 98 57.1
ATR1134G096 Amborella trichopoda HOM05D001081 ORTHO05D007101 1.1e-22 110.2 90 61.1
Sp7g20190 Schrenkiella parvula HOM05D001081 ORTHO05D007101 1.4e-22 109.8 108 55.6
SMO356G0374 Selaginella moellendorffii HOM05D001081 ORTHO05D007101 1.4e-22 109.8 87 56.3
MSTRG.25269 Avicennia marina HOM05D001081 ORTHO05D007101 1.8e-22 109.4 88 61.4
Atru.chr9.478 Acer truncatum HOM05D001081 ORTHO05D007101 4.1e-22 108.2 99 57.6
BcaB03g11721 Brassica carinata HOM05D001081 ORTHO05D007101 5.6e-19 97.8 104 53.8
CSS0017659 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 7.3e-19 97.4 82 58.5
ClCG05G008950 Citrullus lanatus HOM05D001081 ORTHO05D007101 7.3e-19 97.4 80 61.2
CDE11G0170 Ceratophyllum demersum HOM05D001081 ORTHO05D007101 3.6e-18 95.1 103 52.4
CBR_g8977 Chara braunii HOM05D001081 ORTHO05D007101 6.8e-17 90.9 96 51.0
Solyc12g042720.3 Solanum lycopersicum HOM05D001081 ORTHO05D007101 3.4e-16 88.6 77 55.8
Dinv31879 Davidia involucrata HOM05D001081 ORTHO05D007101 4.4e-16 88.2 76 59.2
Actinidia17007 Actinidia chinensis HOM05D001081 ORTHO05D007101 7.8e-13 77.4 56 66.1
CSS0023065 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 1.3e-12 76.6 61 60.7
CSS0034162 Camellia sinensis var. sinensis HOM05D001081 ORTHO05D007101 3.6e-10 68.6 70 48.6
Gohir.A09G033580 Gossypium hirsutum HOM05D001081 ORTHO05D007101 8.1e-10 67.4 60 53.3
Gohir.D09G034100 Gossypium hirsutum HOM05D001081 ORTHO05D007101 3.1e-09 65.5 60 53.3
Nitab4.5_0001077g0030 Nicotiana tabacum HOM05D012963 ORTHO05D007101 5.4e-06 54.7 55 47.3


User provided reference genes

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