Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0012s0012 Marchantia polymorpha HOM05D008676 ORTHO05D010936 3.5e-266 921.0 453 100.0
Pp3c1_16240 Physcomitrium patens HOM05D008676 ORTHO05D010936 5.6e-187 657.9 422 76.5
AagrBONN_evm.TU.Sc2ySwM_228.857 Anthoceros agrestis HOM05D008676 ORTHO05D010936 2.1e-178 629.4 397 74.8
SMO337G0080 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 5.3e-153 545.0 334 78.1
AagrBONN_evm.TU.Sc2ySwM_369.291 Anthoceros agrestis HOM05D008676 ORTHO05D010936 1.8e-137 493.4 352 70.2
Cre17.g699500 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.3e-132 476.5 401 59.1
PRCOL_00003912 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 4.5e-120 435.6 433 52.2
MCO11G220 Micromonas commoda HOM05D008676 ORTHO05D010936 2.4e-89 333.6 372 43.8
MCO10G276 Micromonas commoda HOM05D008676 ORTHO05D010936 5.8e-83 312.4 347 47.6
CBR_g54068 Chara braunii HOM05D008676 ORTHO05D010936 4.9e-82 309.3 383 43.1
PRCOL_00004385 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 5.2e-76 289.3 340 45.0
Cre02.g117350 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.2e-75 288.1 381 39.6
MCO05G481 Micromonas commoda HOM05D008676 ORTHO05D010936 2.9e-42 177.2 335 36.1
PRCOL_00007033 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.1e-40 171.0 360 31.1
Cre02.g146650 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 6.0e-40 169.5 359 33.4
CBR_g51027 Chara braunii HOM05D008676 ORTHO05D010936 1.0e-39 168.7 326 31.3
SMO348G0088 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 1.0e-39 168.7 349 33.2
SMO117G0188 Selaginella moellendorffii HOM05D008676 ORTHO05D010936 2.3e-39 167.5 342 31.9
Cre06.g300250 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.3e-38 163.7 335 35.5
MCO03G450 Micromonas commoda HOM05D008676 ORTHO05D010936 7.4e-38 162.5 341 29.9
Pp3c6_25370 Physcomitrium patens HOM05D008676 ORTHO05D010936 9.6e-38 162.2 410 31.0
CBR_g50631 Chara braunii HOM05D008676 ORTHO05D010936 4.8e-37 159.8 302 33.4
PRCOL_00001343 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 6.5e-34 149.4 318 28.9
MCO11G738 Micromonas commoda HOM05D008676 ORTHO05D010936 8.4e-34 149.1 303 29.4
Cre03.g145447 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 5.5e-25 119.8 234 32.5
CBR_g12467 Chara braunii HOM05D008676 ORTHO05D010936 1.6e-24 118.2 352 29.0
Cre09.g403108 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.9e-23 113.6 345 23.8
Cre01.g050451 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 8.8e-23 112.5 471 23.8
PRCOL_00002565 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.7e-21 108.2 251 32.7
Cre12.g547700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.8e-18 97.1 249 30.1
MCO15G046 Micromonas commoda HOM05D008676 ORTHO05D010936 8.5e-18 95.9 188 34.6
Cre13.g591700 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 1.6e-16 91.7 318 27.4
Cre09.g394769 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 2.0e-14 84.7 310 24.8
MCO15G671 Micromonas commoda HOM05D008676 ORTHO05D010936 5.7e-14 83.2 330 25.2
CsaV3_1G041050 Cucumis sativus L. HOM05D006378 ORTHO05D007959 2.8e-13 80.9 334 26.3
Cpa.g.sc28.38 Carica papaya HOM05D006378 ORTHO05D007959 4.8e-13 80.1 378 23.8
Haze_26013 Corylus avellana HOM05D006378 ORTHO05D007959 8.2e-13 79.3 326 24.8
AagrBONN_evm.TU.Sc2ySwM_368.1638 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.1e-12 79.0 156 28.2
CBR_g37950 Chara braunii HOM05D000019 ORTHO05D000002 1.1e-12 79.0 122 35.2
AagrBONN_evm.TU.Sc2ySwM_368.1640 Anthoceros agrestis HOM05D066407 ORTHO05D010936 1.4e-12 78.6 156 28.2
Carub.0002s2445 Capsella rubella HOM05D006378 ORTHO05D007959 1.4e-12 78.6 329 25.2
Sc08g0008890 Simmondsia chinensis HOM05D006378 ORTHO05D007959 1.4e-12 78.6 334 24.6
AL2G37770 Arabidopsis lyrata HOM05D006378 ORTHO05D007959 1.8e-12 78.2 327 26.3
MELO3C015521.2 Cucumis melo HOM05D006378 ORTHO05D007959 1.8e-12 78.2 334 26.0
Thhalv10003638m.g Eutrema salsugineum HOM05D006378 ORTHO05D007959 1.8e-12 78.2 323 26.3
BcaB06g26949 Brassica carinata HOM05D006378 ORTHO05D007959 2.4e-12 77.8 328 25.9
BolC4t25998H Brassica oleracea HOM05D006378 ORTHO05D007959 2.4e-12 77.8 319 25.4
Cfa002988 Carpinus fangiana HOM05D006378 ORTHO05D007959 2.4e-12 77.8 321 24.9
MCO13G127 Micromonas commoda HOM05D008676 ORTHO05D048976 2.4e-12 77.8 287 26.5
A04p10600 Brassica napus HOM05D006378 ORTHO05D007959 3.1e-12 77.4 319 25.4
AUR62025249 Chenopodium quinoa HOM05D006378 ORTHO05D007959 3.1e-12 77.4 381 23.9
AagrBONN_evm.TU.Sc2ySwM_117.2900 Anthoceros agrestis HOM05D006378 ORTHO05D007959 4.1e-12 77.0 323 25.7
BcaC02g09569 Brassica carinata HOM05D006378 ORTHO05D007959 4.1e-12 77.0 319 25.4
C04p44250 Brassica napus HOM05D006378 ORTHO05D007959 4.1e-12 77.0 319 25.4
BraA04t16723Z Brassica rapa HOM05D006378 ORTHO05D007959 4.1e-12 77.0 319 25.4
ClCG03G015080 Citrullus lanatus HOM05D006378 ORTHO05D007959 4.1e-12 77.0 337 25.5
arahy.Tifrunner.gnm1.ann1.LZ43MP Arachis hypogaea HOM05D006378 ORTHO05D007959 5.3e-12 76.6 321 25.5
TAR383G0342 Trochodendron aralioides HOM05D006378 ORTHO05D007959 5.3e-12 76.6 382 23.8
CARHR071080 Cardamine hirsuta HOM05D006378 ORTHO05D007959 7.0e-12 76.3 318 25.5
CBR_g36370 Chara braunii HOM05D008676 ORTHO05D010936 7.0e-12 76.3 80 47.5
Ah.09g231620 Amaranthus hybridus HOM05D006378 ORTHO05D007959 9.1e-12 75.9 397 25.2
AT1G77550 Arabidopsis thaliana HOM05D006378 ORTHO05D007959 9.1e-12 75.9 319 23.8
CAN.G62.5 Capsicum annuum HOM05D006378 ORTHO05D007959 9.1e-12 75.9 322 25.5
Cc06_g12180 Coffea canephora HOM05D006378 ORTHO05D007959 9.1e-12 75.9 328 24.1
Sed0026053 Sechium edule HOM05D006378 ORTHO05D007959 9.1e-12 75.9 319 26.3
PRCOL_00006851 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.2e-11 75.5 184 30.4
PGSC0003DMG400019029 Solanum tuberosum HOM05D006378 ORTHO05D007959 1.5e-11 75.1 326 26.7
MD15G1217600 Malus domestica HOM05D006378 ORTHO05D007959 2.0e-11 74.7 343 24.8
Psat1g134280 Pisum sativum HOM05D006378 ORTHO05D007959 2.0e-11 74.7 309 25.2
ATR0598G254 Amborella trichopoda HOM05D006378 ORTHO05D007959 2.6e-11 74.3 353 24.6
arahy.Tifrunner.gnm1.ann1.CBKZ0V Arachis hypogaea HOM05D006378 ORTHO05D007959 2.6e-11 74.3 321 25.5
MBI19_g16222_MAGBIO Magnolia biondii HOM05D006378 ORTHO05D007959 2.6e-11 74.3 313 25.6
PRCOL_00000498 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 2.6e-11 74.3 209 28.2
Sp7g06720 Schrenkiella parvula HOM05D006378 ORTHO05D007959 2.6e-11 74.3 320 24.4
Aa31LG2G20840 Aethionema arabicum HOM05D006378 ORTHO05D007959 3.5e-11 73.9 235 25.5
Duzib168G0703 Durio zibethinus HOM05D006378 ORTHO05D007959 3.5e-11 73.9 329 25.2
Nitab4.5_0009436g0010 Nicotiana tabacum HOM05D006378 ORTHO05D007959 3.5e-11 73.9 362 26.0
QL11p000773 Quercus lobata HOM05D006378 ORTHO05D007959 3.5e-11 73.9 329 24.9
Solyc07g041870.3 Solanum lycopersicum HOM05D006378 ORTHO05D007959 3.5e-11 73.9 322 25.5
Sopen07g021350 Solanum pennellii HOM05D006378 ORTHO05D007959 5.9e-11 73.2 385 25.2
Lsat_1_v5_gn_8_86460 Lactuca sativa HOM05D006378 ORTHO05D007959 7.7e-11 72.8 317 24.9
TWI34G0472 Tripterygium wilfordii HOM05D006378 ORTHO05D007959 7.7e-11 72.8 309 26.2
Mapoly0113s0055 Marchantia polymorpha HOM05D006378 ORTHO05D007959 1.3e-10 72.0 319 25.1
Gohir.A06G076500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 1.7e-10 71.6 310 25.2
Peaxi162Scf00127g01816 Petunia axillaris HOM05D006378 ORTHO05D007959 1.7e-10 71.6 367 25.3
CBR_g36369 Chara braunii HOM05D008676 ORTHO05D010936 2.2e-10 71.2 56 51.8
Eucgr.C03264 Eucalyptus grandis HOM05D006378 ORTHO05D007959 2.2e-10 71.2 331 24.5
FAN26G1418 Fragaria x ananassa HOM05D006378 ORTHO05D007959 2.2e-10 71.2 240 25.8
Gohir.D06G075500 Gossypium hirsutum HOM05D006378 ORTHO05D007959 2.2e-10 71.2 318 24.8
HanXRQChr06g0178331 Helianthus annuus HOM05D006378 ORTHO05D007959 2.2e-10 71.2 322 24.8
AUR62028935 Chenopodium quinoa HOM05D006378 ORTHO05D007959 2.9e-10 70.9 381 23.1
COL.COLO4_18097 Corchorus olitorius HOM05D006378 ORTHO05D007959 2.9e-10 70.9 280 25.0
Migut.J00925 Erythranthe guttata HOM05D006378 ORTHO05D007959 2.9e-10 70.9 324 26.2
Nitab4.5_0000343g0150 Nicotiana tabacum HOM05D006378 ORTHO05D007959 2.9e-10 70.9 382 25.1
Rhsim03G0227500 Rhododendron simsii HOM05D006378 ORTHO05D007959 2.9e-10 70.9 337 23.7
FAN26G3001 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.8e-10 70.5 236 25.8
Lalb_Chr08g0232591 Lupinus albus HOM05D006378 ORTHO05D007959 3.8e-10 70.5 324 25.9
PGR044G1219 Punica granatum HOM05D006378 ORTHO05D007959 3.8e-10 70.5 317 24.3
unitig_578.g15677 Utricularia gibba HOM05D006378 ORTHO05D007959 3.8e-10 70.5 232 28.0
VMungo1309G1044 Vigna mungo HOM05D006378 ORTHO05D007959 3.8e-10 70.5 321 24.0
EL10Ac8g19061 Beta vulgaris HOM05D006378 ORTHO05D007959 5.0e-10 70.1 317 24.6
CANSAT56G1041 Cannabis sativa HOM05D006378 ORTHO05D007959 5.0e-10 70.1 240 26.2
DCAR_011949 Daucus carota HOM05D006378 ORTHO05D007959 5.0e-10 70.1 328 24.1
ECA236G3597 Erigeron canadensis HOM05D006378 ORTHO05D007959 5.0e-10 70.1 342 25.1
Sabra06G0111000 Salix brachista HOM05D006378 ORTHO05D007959 6.5e-10 69.7 330 24.5
CSS0003361 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 8.5e-10 69.3 381 24.1
Glyma.15G177600 Glycine max HOM05D006378 ORTHO05D007959 8.5e-10 69.3 321 24.0
Lj7C687T7 Lonicera japonica HOM05D006378 ORTHO05D007959 8.5e-10 69.3 328 24.7
Medtr2g041640 Medicago truncatula HOM05D006378 ORTHO05D007959 8.5e-10 69.3 321 24.3
Ciclev10007418m.g Citrus clementina HOM05D006378 ORTHO05D007959 1.1e-09 68.9 317 24.9
Dinv42394 Davidia involucrata HOM05D006378 ORTHO05D007959 1.1e-09 68.9 374 24.1
SalBow6G1560 Salvia bowleyana HOM05D006378 ORTHO05D007959 1.1e-09 68.9 326 23.9
THA.LOC104826591 Tarenaya hassleriana HOM05D006378 ORTHO05D007959 1.1e-09 68.9 330 23.9
Thecc.09G076800 Theobroma cacao HOM05D006378 ORTHO05D007959 1.1e-09 68.9 326 23.3
Eucgr.C03329 Eucalyptus grandis HOM05D006378 ORTHO05D007959 1.5e-09 68.6 331 24.2
Manes.03G040400 Manihot esculenta HOM05D006378 ORTHO05D007959 1.5e-09 68.6 306 24.2
Os03g0179000 Oryza sativa ssp. japonica HOM05D006378 ORTHO05D007959 1.5e-09 68.6 326 23.9
CBR_g12041 Chara braunii HOM05D006378 ORTHO05D007959 2.5e-09 67.8 325 24.0
Gorai.010G088400 Gossypium raimondii HOM05D006378 ORTHO05D007959 2.5e-09 67.8 318 24.5
Prupe.7G198800 Prunus persica HOM05D006378 ORTHO05D007959 2.5e-09 67.8 330 23.9
SGA_v2.0_scaffold91G28112 Striga asiatica HOM05D006378 ORTHO05D007959 2.5e-09 67.8 322 25.2
Atru.chr7.1707 Acer truncatum HOM05D006378 ORTHO05D007959 3.2e-09 67.4 325 24.0
Cre04.g212550 Chlamydomonas reinhardtii HOM05D008676 ORTHO05D010936 3.2e-09 67.4 170 30.6
Ca_02206_v3 Cicer arietinum L. HOM05D006378 ORTHO05D007959 3.2e-09 67.4 304 25.0
FAN19G1878 Fragaria x ananassa HOM05D006378 ORTHO05D007959 3.2e-09 67.4 210 26.2
PSO135G0915 Papaver somniferum HOM05D006378 ORTHO05D007959 3.2e-09 67.4 330 25.2
MSTRG.19459 Avicennia marina HOM05D006378 ORTHO05D007959 5.5e-09 66.6 317 25.6
Hma1.2p1_0179F.1_g079520 Hydrangea macrophylla HOM05D006378 ORTHO05D007959 5.5e-09 66.6 325 24.9
Phvul.009G227300 Phaseolus vulgaris HOM05D006378 ORTHO05D007959 5.5e-09 66.6 321 23.7
GSVIVG01015082001 Vitis vinifera HOM05D006378 ORTHO05D007959 5.5e-09 66.6 338 23.4
SEGI_37917 Sequoiadendron giganteum HOM05D006378 ORTHO05D007959 7.2e-09 66.2 154 27.9
Aqoxy7G04130 Aquilegia oxysepala HOM05D006378 ORTHO05D007959 9.4e-09 65.9 385 24.2
Nn8g38637 Nelumbo nucifera HOM05D006378 ORTHO05D007959 9.4e-09 65.9 341 23.2
TPR.G28586 Trifolium pratense HOM05D006378 ORTHO05D007959 9.4e-09 65.9 304 24.7
vmacro06342 Vaccinium macrocarpon HOM05D006378 ORTHO05D007959 9.4e-09 65.9 342 23.1
Lj6g0025012 Lotus japonicus HOM05D006378 ORTHO05D007959 1.2e-08 65.5 321 24.6
RcHm_v2.0_Chr2g0094931 Rosa chinensis HOM05D006378 ORTHO05D007959 1.2e-08 65.5 341 23.2
Potri.006G141900 Populus trichocarpa HOM05D006378 ORTHO05D007959 1.6e-08 65.1 302 24.5
SMO174G0008 Selaginella moellendorffii HOM05D006378 ORTHO05D007959 1.6e-08 65.1 234 26.1
Oeu035912.1 Olea europaea HOM05D006378 ORTHO05D007959 2.1e-08 64.7 307 25.4
Pp3c6_19960 Physcomitrium patens HOM05D006378 ORTHO05D007959 2.1e-08 64.7 294 25.2
PRCOL_00000500 Prasinoderma coloniale HOM05D008676 ORTHO05D048976 2.7e-08 64.3 273 24.5
CSS0014220 Camellia sinensis var. sinensis HOM05D006378 ORTHO05D007959 3.6e-08 63.9 381 23.9
FvH4_1g08650 Fragaria vesca HOM05D006378 ORTHO05D007959 8.0e-08 62.8 350 23.4
HPP92_002164 Vanilla planifolia HOM05D006378 ORTHO05D007959 8.0e-08 62.8 373 22.3
PRCOL_00006674 Prasinoderma coloniale HOM05D008676 ORTHO05D010936 1.4e-07 62.0 197 26.4
Hund08780 Selenicereus undatus HOM05D006378 ORTHO05D007959 1.4e-07 62.0 328 24.4
CBR_g24179 Chara braunii HOM05D008676 ORTHO05D010936 3.0e-07 60.8 169 24.3
CiPaw.03G206400 Carya illinoinensis HOM05D006378 ORTHO05D007959 4.4e-06 57.0 213 27.2


User provided reference genes

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