Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0084 Marchantia polymorpha HOM05D005053 ORTHO05D006206 2.5e-121 438.7 214 100.0
SMO271G0126 Selaginella moellendorffii HOM05D005053 ORTHO05D006206 7.7e-86 320.9 219 71.2
SEGI_13826 Sequoiadendron giganteum HOM05D005053 ORTHO05D006206 1.4e-84 316.6 219 72.1
RcHm_v2.0_Chr2g0104011 Rosa chinensis HOM05D005053 ORTHO05D006206 1.1e-81 307.0 223 68.6
Thecc.01G049700 Theobroma cacao HOM05D005053 ORTHO05D006206 4.3e-81 305.1 224 67.0
Aqoxy6G00906 Aquilegia oxysepala HOM05D005053 ORTHO05D006206 5.7e-81 304.7 223 69.5
COL.COLO4_11341 Corchorus olitorius HOM05D005053 ORTHO05D006206 5.7e-81 304.7 223 67.3
Atru.chr3.440 Acer truncatum HOM05D005053 ORTHO05D006206 2.8e-80 302.4 220 66.8
PSO675G4006 Papaver somniferum HOM05D005053 ORTHO05D006206 2.8e-80 302.4 219 68.9
Cpa.g.sc6.408 Carica papaya HOM05D005053 ORTHO05D006206 3.7e-80 302.0 223 67.3
PSO541G4895 Papaver somniferum HOM05D005053 ORTHO05D006206 6.3e-80 301.2 219 68.9
VMungo0251G0766 Vigna mungo HOM05D005053 ORTHO05D006206 6.3e-80 301.2 218 67.4
Glyma.17G180900 Glycine max HOM05D005053 ORTHO05D006206 8.2e-80 300.8 222 66.2
Lj4g0026236 Lotus japonicus HOM05D005053 ORTHO05D006206 1.1e-79 300.4 219 65.3
Ca_22210_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 1.4e-79 300.1 219 65.8
Gorai.008G072800 Gossypium raimondii HOM05D005053 ORTHO05D006206 1.4e-79 300.1 223 65.9
Manes.13G129200 Manihot esculenta HOM05D005053 ORTHO05D006206 1.4e-79 300.1 223 66.8
Phvul.003G248000 Phaseolus vulgaris HOM05D005053 ORTHO05D006206 1.4e-79 300.1 219 66.2
arahy.Tifrunner.gnm1.ann1.IMYE37 Arachis hypogaea HOM05D005053 ORTHO05D006206 1.8e-79 299.7 222 66.2
arahy.Tifrunner.gnm1.ann1.VE46QQ Arachis hypogaea HOM05D005053 ORTHO05D006206 1.8e-79 299.7 222 66.2
Hund13583 Selenicereus undatus HOM05D005053 ORTHO05D006206 1.8e-79 299.7 219 67.1
TAR376G0500 Trochodendron aralioides HOM05D005053 ORTHO05D006206 4.1e-79 298.5 223 68.6
Medtr8g079240 Medicago truncatula HOM05D005053 ORTHO05D006206 5.3e-79 298.1 219 64.4
PGR102G2816 Punica granatum HOM05D005053 ORTHO05D006206 5.3e-79 298.1 222 65.8
FvH4_1g14960 Fragaria vesca HOM05D005053 ORTHO05D006206 6.9e-79 297.7 221 67.9
MD15G1276200 Malus domestica HOM05D005053 ORTHO05D006206 6.9e-79 297.7 220 66.8
FAN26G1713 Fragaria x ananassa HOM05D005053 ORTHO05D006206 9.1e-79 297.4 221 67.9
FAN23G1215 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-78 297.0 221 67.4
Lalb_Chr09g0333681 Lupinus albus HOM05D005053 ORTHO05D006206 2.0e-78 296.2 222 65.3
EL10Ac6g15144 Beta vulgaris HOM05D005053 ORTHO05D006206 2.6e-78 295.8 218 66.1
AUR62001971 Chenopodium quinoa HOM05D005053 ORTHO05D006206 2.6e-78 295.8 218 65.6
MD02G1163200 Malus domestica HOM05D005053 ORTHO05D006206 3.4e-78 295.4 220 65.9
FAN19G0163 Fragaria x ananassa HOM05D005053 ORTHO05D006206 4.5e-78 295.0 221 67.4
Eucgr.H01988 Eucalyptus grandis HOM05D005053 ORTHO05D006206 1.0e-77 293.9 219 66.2
FAN28G1734 Fragaria x ananassa HOM05D005053 ORTHO05D006206 2.9e-77 292.4 222 67.6
ATR0225G009 Amborella trichopoda HOM05D005053 ORTHO05D006206 3.8e-77 292.0 220 66.4
Actinidia12070 Actinidia chinensis HOM05D005053 ORTHO05D006206 1.1e-76 290.4 223 65.5
Potri.007G037800 Populus trichocarpa HOM05D005053 ORTHO05D006206 1.4e-76 290.0 220 65.5
GSVIVG01005060001 Vitis vinifera HOM05D005053 ORTHO05D006206 1.4e-76 290.0 223 65.9
Pp3c11_5110 Physcomitrium patens HOM05D005053 ORTHO05D006206 1.9e-76 289.7 224 65.2
Actinidia36514 Actinidia chinensis HOM05D005053 ORTHO05D006206 2.5e-76 289.3 220 66.8
Sc03g0001310 Simmondsia chinensis HOM05D005053 ORTHO05D006206 2.5e-76 289.3 222 65.8
Cfa003962 Carpinus fangiana HOM05D005053 ORTHO05D006206 3.2e-76 288.9 220 65.0
Cc07_g05640 Coffea canephora HOM05D005053 ORTHO05D006206 5.5e-76 288.1 223 64.6
Nn6g32115 Nelumbo nucifera HOM05D005053 ORTHO05D006206 5.5e-76 288.1 221 67.0
vmacro17912 Vaccinium macrocarpon HOM05D005053 ORTHO05D006206 5.5e-76 288.1 220 65.5
CSS0024932 Camellia sinensis var. sinensis HOM05D005053 ORTHO05D006206 1.2e-75 287.0 220 65.0
Migut.H00475 Erythranthe guttata HOM05D005053 ORTHO05D006206 2.1e-75 286.2 220 65.0
HanXRQChr14g0448331 Helianthus annuus HOM05D005053 ORTHO05D006206 3.6e-75 285.4 223 63.7
Ciclev10026393m.g Citrus clementina HOM05D005053 ORTHO05D006206 6.1e-75 284.6 238 62.2
Lsat_1_v5_gn_2_86920 Lactuca sativa HOM05D005053 ORTHO05D006206 7.9e-75 284.3 223 63.7
THA.LOC104821262 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 7.9e-75 284.3 220 63.6
CBR_g23008 Chara braunii HOM05D005053 ORTHO05D006206 2.3e-74 282.7 217 63.1
CARHR280750 Cardamine hirsuta HOM05D005053 ORTHO05D006206 3.0e-74 282.3 219 63.0
HanXRQChr07g0199901 Helianthus annuus HOM05D005053 ORTHO05D006206 3.0e-74 282.3 223 62.8
Hma1.2p1_0687F.1_g203520 Hydrangea macrophylla HOM05D005053 ORTHO05D006206 3.9e-74 282.0 222 64.0
THA.LOC104819229 Tarenaya hassleriana HOM05D005053 ORTHO05D006206 3.9e-74 282.0 219 63.9
ClCG01G016600 Citrullus lanatus HOM05D005053 ORTHO05D006206 6.7e-74 281.2 224 62.5
Sed0021889 Sechium edule HOM05D005053 ORTHO05D006206 6.7e-74 281.2 222 62.2
Carub.0008s2757 Capsella rubella HOM05D005053 ORTHO05D006206 8.8e-74 280.8 219 62.1
MELO3C007534.2 Cucumis melo HOM05D005053 ORTHO05D006206 1.1e-73 280.4 224 62.5
Nn5g29376 Nelumbo nucifera HOM05D005053 ORTHO05D006206 1.1e-73 280.4 223 66.4
unitig_736.g22369 Utricularia gibba HOM05D005053 ORTHO05D006206 1.1e-73 280.4 219 64.8
CsaV3_6G042980 Cucumis sativus L. HOM05D005053 ORTHO05D006206 2.6e-73 279.3 224 62.1
AL8G44450 Arabidopsis lyrata HOM05D005053 ORTHO05D006206 5.7e-73 278.1 219 61.6
SGA_v2.0_scaffold204G41608 Striga asiatica HOM05D005053 ORTHO05D006206 1.3e-72 276.9 224 62.5
Sp2g29730 Schrenkiella parvula HOM05D005053 ORTHO05D006206 1.7e-72 276.6 219 61.2
SGA_v2.0_scaffold27G11440 Striga asiatica HOM05D005053 ORTHO05D006206 1.7e-72 276.6 224 62.5
Aa31LG1G15480 Aethionema arabicum HOM05D005053 ORTHO05D006206 2.2e-72 276.2 219 60.7
Nitab4.5_0000806g0140 Nicotiana tabacum HOM05D005053 ORTHO05D006206 2.2e-72 276.2 222 61.3
Oeu004887.1 Olea europaea HOM05D005053 ORTHO05D006206 2.8e-72 275.8 217 63.1
AT5G66930 Arabidopsis thaliana HOM05D005053 ORTHO05D006206 4.8e-72 275.0 219 61.6
ECA238G1636 Erigeron canadensis HOM05D005053 ORTHO05D006206 8.2e-72 274.2 220 62.7
CAN.G470.7 Capsicum annuum HOM05D005053 ORTHO05D006206 1.1e-71 273.9 222 60.4
HPP92_024294 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.4e-71 272.7 219 62.1
HPP92_024303 Vanilla planifolia HOM05D005053 ORTHO05D006206 2.4e-71 272.7 219 62.1
MSTRG.15402 Avicennia marina HOM05D005053 ORTHO05D006206 5.3e-71 271.6 231 59.7
AagrBONN_evm.TU.Sc2ySwM_344.1821 Anthoceros agrestis HOM05D005053 ORTHO05D006206 7.0e-71 271.2 191 69.6
Solyc02g065180.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 7.0e-71 271.2 222 60.8
Sopen02g015310 Solanum pennellii HOM05D005053 ORTHO05D006206 7.0e-71 271.2 222 60.8
Gohir.A12G069100 Gossypium hirsutum HOM05D005053 ORTHO05D006206 7.7e-70 267.7 197 65.5
TAR628G0491 Trochodendron aralioides HOM05D005053 ORTHO05D006206 1.0e-69 267.3 194 68.6
BcaB04g20086 Brassica carinata HOM05D005053 ORTHO05D006206 1.7e-69 266.5 220 59.5
QL06p043337 Quercus lobata HOM05D005053 ORTHO05D006206 1.7e-69 266.5 196 64.8
Gohir.D12G090200 Gossypium hirsutum HOM05D005053 ORTHO05D006206 2.2e-69 266.2 197 65.0
BcaC06g34767 Brassica carinata HOM05D005053 ORTHO05D006206 3.8e-69 265.4 217 59.4
C07p24820 Brassica napus HOM05D005053 ORTHO05D006206 3.8e-69 265.4 217 59.4
Haze_15460 Corylus avellana HOM05D005053 ORTHO05D006206 5.0e-69 265.0 199 64.8
BraA07t29424Z Brassica rapa HOM05D005053 ORTHO05D006206 8.5e-69 264.2 217 59.4
AagrBONN_evm.TU.Sc2ySwM_344.1822 Anthoceros agrestis HOM05D005053 ORTHO05D006206 1.9e-68 263.1 217 59.9
A07p16970 Brassica napus HOM05D005053 ORTHO05D006206 2.5e-68 262.7 217 59.0
Ca_22228_v3 Cicer arietinum L. HOM05D005053 ORTHO05D006206 3.2e-68 262.3 193 63.7
Thhalv10005270m.g Eutrema salsugineum HOM05D005053 ORTHO05D006206 3.2e-68 262.3 211 59.7
BcaB02g09970 Brassica carinata HOM05D005053 ORTHO05D006206 7.2e-68 261.2 217 59.0
AUR62003832 Chenopodium quinoa HOM05D005053 ORTHO05D006206 1.2e-67 260.4 192 64.6
Duzib264G0045 Durio zibethinus HOM05D005053 ORTHO05D006206 1.2e-67 260.4 197 62.9
BolC9t54027H Brassica oleracea HOM05D005053 ORTHO05D006206 2.1e-67 259.6 222 58.1
Ah.02g124120 Amaranthus hybridus HOM05D005053 ORTHO05D006206 2.7e-67 259.2 212 60.4
BcaC04g23174 Brassica carinata HOM05D005053 ORTHO05D006206 4.7e-67 258.5 221 58.8
C09p11390 Brassica napus HOM05D005053 ORTHO05D006206 4.7e-67 258.5 221 58.8
Dinv29944 Davidia involucrata HOM05D005053 ORTHO05D006206 1.4e-66 256.9 198 63.6
Peaxi162Scf00049g01010 Petunia axillaris HOM05D005053 ORTHO05D006206 1.4e-66 256.9 235 54.9
CiPaw.01G025900 Carya illinoinensis HOM05D005053 ORTHO05D006206 3.0e-66 255.8 199 63.8
Duzib264G0685 Durio zibethinus HOM05D005053 ORTHO05D006206 4.0e-66 255.4 197 61.9
TWI09G0689 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 4.0e-66 255.4 201 63.2
Duzib147G0596 Durio zibethinus HOM05D005053 ORTHO05D006206 5.2e-66 255.0 197 62.4
A09p09640 Brassica napus HOM05D005053 ORTHO05D006206 6.7e-66 254.6 220 57.3
TWI53G1273 Tripterygium wilfordii HOM05D005053 ORTHO05D006206 8.8e-66 254.2 198 64.1
BraA09t36613Z Brassica rapa HOM05D005053 ORTHO05D006206 1.5e-65 253.4 220 56.4
BolC7t43007H Brassica oleracea HOM05D005053 ORTHO05D006206 7.5e-65 251.1 212 57.1
Sabra07G0034100 Salix brachista HOM05D005053 ORTHO05D006206 3.7e-64 248.8 200 61.5
Rhsim08G0104900 Rhododendron simsii HOM05D005053 ORTHO05D006206 2.4e-63 246.1 300 48.0
MBI16_g19902_MAGBIO Magnolia biondii HOM05D005053 ORTHO05D006206 5.3e-63 245.0 178 67.4
Solyc02g090330.3 Solanum lycopersicum HOM05D005053 ORTHO05D006206 5.9e-62 241.5 212 54.7
Nitab4.5_0009901g0010 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.0e-61 240.7 204 57.4
PGSC0003DMG400010070 Solanum tuberosum HOM05D005053 ORTHO05D006206 1.5e-60 236.9 212 53.8
Peaxi162Scf00993g00120 Petunia axillaris HOM05D005053 ORTHO05D006206 9.4e-60 234.2 195 57.4
BcaC03g18393 Brassica carinata HOM05D005053 ORTHO05D006206 8.0e-59 231.1 223 52.9
C02p64670 Brassica napus HOM05D005053 ORTHO05D006206 8.0e-59 231.1 223 52.9
RhsimUnG0070600 Rhododendron simsii HOM05D005053 ORTHO05D006206 1.8e-58 229.9 289 46.7
BolC2t12528H Brassica oleracea HOM05D005053 ORTHO05D006206 5.2e-58 228.4 212 53.8
Os12g0428200 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 5.2e-58 228.4 218 53.2
CiPaw.02G011700 Carya illinoinensis HOM05D005053 ORTHO05D006206 7.5e-57 224.6 221 54.8
Lj7A44T18 Lonicera japonica HOM05D005053 ORTHO05D006206 9.8e-57 224.2 195 57.9
AagrBONN_evm.TU.Sc2ySwM_369.468 Anthoceros agrestis HOM05D000050 ORTHO05D000771 2.7e-54 216.1 215 54.4
Zm00001eb184240 Zea mays HOM05D005053 ORTHO05D006206 3.8e-53 212.2 218 50.5
DCAR_025697 Daucus carota HOM05D005053 ORTHO05D006206 1.5e-52 210.3 172 59.9
Os12g0446700 Oryza sativa ssp. japonica HOM05D005053 ORTHO05D006206 2.5e-52 209.5 192 52.6
Dinv39902 Davidia involucrata HOM05D005053 ORTHO05D006206 8.0e-51 204.5 175 58.9
Psat4g088960 Pisum sativum HOM05D005053 ORTHO05D006206 6.3e-48 194.9 157 60.5
Prupe.7G140800 Prunus persica HOM05D005053 ORTHO05D006206 8.3e-48 194.5 164 60.4
MCO07G250 Micromonas commoda HOM05D005053 ORTHO05D006206 9.5e-44 181.0 216 42.6
Ah.03g144090 Amaranthus hybridus HOM05D005053 ORTHO05D006206 1.2e-43 180.6 194 51.0
CDE02G0556 Ceratophyllum demersum HOM05D005053 ORTHO05D006206 4.0e-42 175.6 162 53.1
Psat4g089040 Pisum sativum HOM05D005053 ORTHO05D006206 1.5e-41 173.7 185 48.1
Cre07.g334700 Chlamydomonas reinhardtii HOM05D005053 ORTHO05D006206 1.3e-40 170.6 260 40.0
Nitab4.5_0002157g0070 Nicotiana tabacum HOM05D005053 ORTHO05D006206 1.7e-40 170.2 173 51.4
PRCOL_00006110 Prasinoderma coloniale HOM05D005053 ORTHO05D006206 1.0e-37 161.0 213 43.2
Sopen02g035010 Solanum pennellii HOM05D005053 ORTHO05D006206 1.0e-37 161.0 160 50.0
TPR.G40637 Trifolium pratense HOM05D005053 ORTHO05D006206 1.0e-37 161.0 93 75.3
SGA_v2.0_scaffold15G07238 Striga asiatica HOM05D005053 ORTHO05D006206 8.3e-32 141.4 243 39.1
FAN19G1388 Fragaria x ananassa HOM05D005053 ORTHO05D006206 1.2e-30 137.5 84 76.2
Zm00001eb184160 Zea mays HOM05D005053 ORTHO05D006206 2.0e-25 120.2 84 63.1
TPR.G672 Trifolium pratense HOM05D005053 ORTHO05D006206 8.6e-21 104.8 99 52.5
Nitab4.5_0003750g0060 Nicotiana tabacum HOM05D005053 ORTHO05D006206 3.3e-20 102.8 137 41.6
AUR62028910 Chenopodium quinoa HOM05D005053 ORTHO05D006206 3.6e-11 72.8 91 41.8
Ciclev10027037m.g Citrus clementina HOM05D005053 ORTHO05D006206 3.6e-11 72.8 83 48.2
CAN.G836.41 Capsicum annuum HOM05D005053 ORTHO05D024763 8.1e-11 71.6 138 37.0
Cfa024505 Carpinus fangiana HOM05D005053 ORTHO05D124968 8.4e-08 61.6 197 24.4


User provided reference genes

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