Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0060 Marchantia polymorpha HOM05D004743 ORTHO05D005698 8.3e-82 307.0 156 100.0
Pp3c5_22310 Physcomitrium patens HOM05D004743 ORTHO05D005698 4.5e-51 204.9 154 64.9
Pp3c6_9862 Physcomitrium patens HOM05D004743 ORTHO05D005698 3.8e-50 201.8 154 64.3
CBR_g32607 Chara braunii HOM05D004743 ORTHO05D005698 3.4e-43 178.7 154 55.8
AagrBONN_evm.TU.Sc2ySwM_362.1495 Anthoceros agrestis HOM05D004743 ORTHO05D005698 1.3e-39 166.8 146 55.5
Aa31LG10G12610 Aethionema arabicum HOM05D004743 ORTHO05D005698 3.4e-35 152.1 154 51.3
Aa31LG1G24060 Aethionema arabicum HOM05D004743 ORTHO05D005698 1.0e-34 150.6 154 52.6
Thhalv10006285m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 1.0e-34 150.6 154 50.6
Sp5g04820 Schrenkiella parvula HOM05D004743 ORTHO05D005698 1.0e-34 150.6 154 50.6
Sed0015240 Sechium edule HOM05D004743 ORTHO05D005698 1.0e-34 150.6 156 48.7
Sed0004669 Sechium edule HOM05D004743 ORTHO05D005698 1.3e-34 150.2 156 49.4
MELO3C009644.2 Cucumis melo HOM05D004743 ORTHO05D005698 1.7e-34 149.8 156 50.6
TAR633G2476 Trochodendron aralioides HOM05D004743 ORTHO05D005698 2.9e-34 149.1 154 50.6
BcaC02g12469 Brassica carinata HOM05D004743 ORTHO05D005698 5.0e-34 148.3 155 51.0
BcaNung04402 Brassica carinata HOM05D004743 ORTHO05D005698 5.0e-34 148.3 155 51.0
A05p02780 Brassica napus HOM05D004743 ORTHO05D005698 5.0e-34 148.3 155 51.0
C04p03370 Brassica napus HOM05D004743 ORTHO05D005698 5.0e-34 148.3 155 51.0
BraA05t19270Z Brassica rapa HOM05D004743 ORTHO05D005698 5.0e-34 148.3 155 51.0
BcaB06g29229 Brassica carinata HOM05D004743 ORTHO05D005698 6.5e-34 147.9 149 51.0
CDE07G0719 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 8.5e-34 147.5 154 51.9
MD14G1060700 Malus domestica HOM05D004743 ORTHO05D005698 1.1e-33 147.1 154 49.4
CsaV3_3G039010 Cucumis sativus L. HOM05D004743 ORTHO05D005698 1.4e-33 146.7 156 48.7
MD12G1061000 Malus domestica HOM05D004743 ORTHO05D005698 1.4e-33 146.7 154 49.4
vmacro07935 Vaccinium macrocarpon HOM05D004743 ORTHO05D005698 1.4e-33 146.7 154 49.4
BcaC02g07257 Brassica carinata HOM05D004743 ORTHO05D005698 1.9e-33 146.4 149 50.3
A04p32050 Brassica napus HOM05D004743 ORTHO05D005698 1.9e-33 146.4 149 50.3
C04p69570 Brassica napus HOM05D004743 ORTHO05D005698 1.9e-33 146.4 149 50.3
BolC4t28455H Brassica oleracea HOM05D004743 ORTHO05D005698 1.9e-33 146.4 149 50.3
BraA04t18662Z Brassica rapa HOM05D004743 ORTHO05D005698 1.9e-33 146.4 149 50.3
FvH4_6g22680 Fragaria vesca HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 48.7
FAN02G0944 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 48.7
FAN05G2002 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 48.7
FAN09G0554 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 48.7
FAN14G2026 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 48.7
FAN14G4474 Fragaria x ananassa HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 48.7
TAR633G1605 Trochodendron aralioides HOM05D004743 ORTHO05D005698 1.9e-33 146.4 154 50.0
Rhsim03G0009100 Rhododendron simsii HOM05D004743 ORTHO05D005698 2.5e-33 146.0 154 48.7
RcHm_v2.0_Chr3g0480261 Rosa chinensis HOM05D004743 ORTHO05D005698 3.2e-33 145.6 154 49.4
Sp4g24390 Schrenkiella parvula HOM05D004743 ORTHO05D005698 4.2e-33 145.2 154 48.7
THA.LOC104824464 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 4.2e-33 145.2 154 49.4
Thhalv10017352m.g Eutrema salsugineum HOM05D004743 ORTHO05D005698 5.5e-33 144.8 154 49.4
TAR623G0239 Trochodendron aralioides HOM05D004743 ORTHO05D005698 5.5e-33 144.8 154 50.0
AL4G40570 Arabidopsis lyrata HOM05D004743 ORTHO05D005698 7.2e-33 144.4 154 48.1
Actinidia09383 Actinidia chinensis HOM05D000570 ORTHO05D005344 9.4e-33 144.1 154 48.7
Cc06_g22060 Coffea canephora HOM05D004743 ORTHO05D005698 9.4e-33 144.1 154 48.7
Duzib106G0699 Durio zibethinus HOM05D004743 ORTHO05D005698 9.4e-33 144.1 154 50.0
PSO339G6088 Papaver somniferum HOM05D004743 ORTHO05D005698 1.2e-32 143.7 154 50.0
PSO384G3106 Papaver somniferum HOM05D004743 ORTHO05D005698 1.2e-32 143.7 154 50.0
Carub.0004s2455 Capsella rubella HOM05D004743 ORTHO05D005698 1.6e-32 143.3 154 48.7
AT2G42210 Arabidopsis thaliana HOM05D004743 ORTHO05D005698 2.1e-32 142.9 154 48.1
CARHR137250 Cardamine hirsuta HOM05D004743 ORTHO05D005698 2.1e-32 142.9 154 48.7
HanXRQChr10g0295691 Helianthus annuus HOM05D004743 ORTHO05D005698 2.1e-32 142.9 154 48.1
Aqoxy2G00062 Aquilegia oxysepala HOM05D004743 ORTHO05D005698 2.7e-32 142.5 154 47.4
Cc00_g14600 Coffea canephora HOM05D004743 ORTHO05D005698 2.7e-32 142.5 154 48.1
Potri.006G059300 Populus trichocarpa HOM05D004743 ORTHO05D005698 2.7e-32 142.5 154 49.4
CANSAT64G2667 Cannabis sativa HOM05D004743 ORTHO05D005698 4.6e-32 141.7 154 48.7
EL10Ac3g06947 Beta vulgaris HOM05D004743 ORTHO05D005698 6.1e-32 141.4 154 47.4
Cpa.g.sc85.89 Carica papaya HOM05D004743 ORTHO05D005698 7.9e-32 141.0 154 48.7
CiPaw.10G028000 Carya illinoinensis HOM05D004743 ORTHO05D005698 1.4e-31 140.2 154 46.8
Prupe.7G073800 Prunus persica HOM05D004743 ORTHO05D005698 1.4e-31 140.2 154 46.8
ATR0605G135 Amborella trichopoda HOM05D004743 ORTHO05D005698 1.8e-31 139.8 152 48.0
COL.COLO4_36134 Corchorus olitorius HOM05D004743 ORTHO05D005698 1.8e-31 139.8 154 48.1
Gohir.A01G192000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 1.8e-31 139.8 154 48.1
Gorai.006G141500 Gossypium raimondii HOM05D004743 ORTHO05D005698 1.8e-31 139.8 154 48.1
Manes.09G032100 Manihot esculenta HOM05D004743 ORTHO05D005698 1.8e-31 139.8 154 48.7
Oeu033746.1 Olea europaea HOM05D004743 ORTHO05D005698 1.8e-31 139.8 154 47.4
SGA_v2.0_scaffold69G23079 Striga asiatica HOM05D004743 ORTHO05D005698 1.8e-31 139.8 154 47.4
CDE04G2796 Ceratophyllum demersum HOM05D004743 ORTHO05D005698 2.3e-31 139.4 137 53.3
AUR62012065 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.3e-31 139.4 150 49.3
AUR62024326 Chenopodium quinoa HOM05D004743 ORTHO05D005698 2.3e-31 139.4 150 49.3
Gohir.D01G178000 Gossypium hirsutum HOM05D004743 ORTHO05D005698 2.3e-31 139.4 153 48.4
Gorai.002G225100 Gossypium raimondii HOM05D004743 ORTHO05D005698 2.3e-31 139.4 153 48.4
HanXRQChr15g0491311 Helianthus annuus HOM05D004743 ORTHO05D005698 2.3e-31 139.4 154 46.8
MSTRG.19893 Avicennia marina HOM05D004743 ORTHO05D005698 3.0e-31 139.0 154 46.1
Haze_19962 Corylus avellana HOM05D004743 ORTHO05D005698 3.0e-31 139.0 154 45.5
Gohir.A09G126700 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.0e-31 139.0 154 48.1
Migut.J01816 Erythranthe guttata HOM05D004743 ORTHO05D005698 3.9e-31 138.7 154 44.8
Gohir.D09G123248 Gossypium hirsutum HOM05D004743 ORTHO05D005698 3.9e-31 138.7 154 47.4
CSS0027207 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.1e-31 138.3 154 46.8
CSS0048559 Camellia sinensis var. sinensis HOM05D004743 ORTHO05D005698 5.1e-31 138.3 154 46.8
Dinv14277 Davidia involucrata HOM05D004743 ORTHO05D005698 5.1e-31 138.3 154 46.8
Lsat_1_v5_gn_9_28001 Lactuca sativa HOM05D004743 ORTHO05D005698 5.1e-31 138.3 154 46.8
Hund19191 Selenicereus undatus HOM05D004743 ORTHO05D005698 5.1e-31 138.3 154 48.1
Thecc.05G168500 Theobroma cacao HOM05D004743 ORTHO05D005698 5.1e-31 138.3 154 48.1
Ciclev10012973m.g Citrus clementina HOM05D004743 ORTHO05D005698 6.7e-31 137.9 154 46.1
Lju124A30G9 Lonicera japonica HOM05D004743 ORTHO05D005698 2.0e-30 136.3 154 44.8
Sopen10g029310 Solanum pennellii HOM05D004743 ORTHO05D005698 2.0e-30 136.3 153 47.7
Solyc10g078690.3 Solanum lycopersicum HOM05D004743 ORTHO05D005698 2.5e-30 136.0 153 47.1
Sc13g0002130 Simmondsia chinensis HOM05D004743 ORTHO05D005698 3.3e-30 135.6 154 47.4
ECA247G0571 Erigeron canadensis HOM05D004743 ORTHO05D005698 4.3e-30 135.2 154 44.8
MBI04_g27127_MAGBIO Magnolia biondii HOM05D004743 ORTHO05D005698 5.7e-30 134.8 154 46.1
Manes.08G045000 Manihot esculenta HOM05D004743 ORTHO05D005698 5.7e-30 134.8 154 46.8
PGSC0003DMG400011432 Solanum tuberosum HOM05D004743 ORTHO05D005698 1.3e-29 133.7 153 46.4
Hma1.2p1_0005F.1_g004310 Hydrangea macrophylla HOM05D004743 ORTHO05D005698 2.8e-29 132.5 154 44.2
PGR142G2650 Punica granatum HOM05D004743 ORTHO05D005698 3.7e-29 132.1 154 44.8
Glyma.19G145900 Glycine max HOM05D004743 ORTHO05D005698 4.8e-29 131.7 154 45.5
SEGI_22128 Sequoiadendron giganteum HOM05D004743 ORTHO05D005698 4.8e-29 131.7 133 51.1
Glyma.03G142900 Glycine max HOM05D004743 ORTHO05D005698 1.1e-28 130.6 154 45.5
unitig_749.g14140 Utricularia gibba HOM05D004743 ORTHO05D005698 1.1e-28 130.6 154 44.2
Ah.13g076070 Amaranthus hybridus HOM05D004743 ORTHO05D005698 2.4e-28 129.4 154 45.5
DCAR_013558 Daucus carota HOM05D004743 ORTHO05D005698 3.1e-28 129.0 154 44.8
Peaxi162Scf00003g04210 Petunia axillaris HOM05D004743 ORTHO05D005698 3.1e-28 129.0 153 47.1
VMungo1383G0120 Vigna mungo HOM05D004743 ORTHO05D005698 4.1e-28 128.6 154 44.2
Ca_08506_v3 Cicer arietinum L. HOM05D004743 ORTHO05D005698 5.3e-28 128.3 154 44.2
GSVIVG01033524001 Vitis vinifera HOM05D004743 ORTHO05D005698 5.3e-28 128.3 154 44.8
Duzib128G1008 Durio zibethinus HOM05D004743 ORTHO05D005698 6.9e-28 127.9 154 45.5
Psat3g069720 Pisum sativum HOM05D004743 ORTHO05D005698 6.9e-28 127.9 154 44.8
arahy.Tifrunner.gnm1.ann1.2GY28N Arachis hypogaea HOM05D000570 ORTHO05D005344 9.1e-28 127.5 154 42.2
arahy.Tifrunner.gnm1.ann1.CB7VX4 Arachis hypogaea HOM05D004743 ORTHO05D005344 9.1e-28 127.5 154 42.2
Nitab4.5_0000991g0030 Nicotiana tabacum HOM05D004743 ORTHO05D005698 1.2e-27 127.1 153 45.1
CAN.G1161.21 Capsicum annuum HOM05D004743 ORTHO05D005698 2.0e-27 126.3 152 44.7
Lalb_Chr04g0259631 Lupinus albus HOM05D004743 ORTHO05D005698 2.6e-27 125.9 154 44.2
Nitab4.5_0001538g0070 Nicotiana tabacum HOM05D004743 ORTHO05D005698 2.6e-27 125.9 153 44.4
Phvul.001G140800 Phaseolus vulgaris HOM05D004743 ORTHO05D005698 3.4e-27 125.6 154 43.5
HPP92_001833 Vanilla planifolia HOM05D004743 ORTHO05D005698 4.5e-27 125.2 154 40.9
Lj1g0027895 Lotus japonicus HOM05D004743 ORTHO05D005344 7.7e-27 124.4 148 43.9
THA.LOC104802456 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 1.7e-26 123.2 143 45.5
Cfa016899 Carpinus fangiana HOM05D006381 ORTHO05D008523 2.2e-26 122.9 135 47.4
Lalb_Chr18g0047741 Lupinus albus HOM05D004743 ORTHO05D005698 6.5e-26 121.3 137 45.3
Atru.chr8.1050 Acer truncatum HOM05D004743 ORTHO05D005698 9.4e-25 117.5 125 49.6
Os02g0717300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 1.2e-24 117.1 142 44.4
Sabra06G0042700 Salix brachista HOM05D004743 ORTHO05D005698 2.7e-24 115.9 203 37.4
TWI77G0677 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 6.1e-24 114.8 155 42.6
Zm00001eb252780 Zea mays HOM05D004743 ORTHO05D005698 8.8e-23 110.9 142 42.3
ClCG10G017380 Citrullus lanatus HOM05D004743 ORTHO05D005698 1.1e-22 110.5 246 31.3
Nn7g36049 Nelumbo nucifera HOM05D004743 ORTHO05D005698 1.7e-21 106.7 123 46.3
TWI53G0547 Tripterygium wilfordii HOM05D004743 ORTHO05D005698 4.8e-21 105.1 156 39.1
unitig_26.g9039 Utricularia gibba HOM05D004743 ORTHO05D005698 4.8e-21 105.1 207 33.8
QL07p023149 Quercus lobata HOM05D004743 ORTHO05D005698 1.4e-20 103.6 107 47.7
TPR.G13232 Trifolium pratense HOM05D004743 ORTHO05D005698 9.1e-20 100.9 116 44.8
Oeu008114.1 Olea europaea HOM05D004743 ORTHO05D005698 4.5e-19 98.6 116 39.7
SalBow6G0397 Salvia bowleyana HOM05D004743 ORTHO05D005698 5.9e-19 98.2 187 33.7
SMO116G0085 Selaginella moellendorffii HOM05D004743 ORTHO05D005698 1.7e-18 96.7 147 38.1
BolC4t21974H Brassica oleracea HOM05D004743 ORTHO05D005698 3.8e-18 95.5 95 52.6
C04p16200 Brassica napus HOM05D004743 ORTHO05D005698 5.5e-17 91.7 83 51.8
Hund19190 Selenicereus undatus HOM05D004743 ORTHO05D005698 8.0e-16 87.8 131 38.2
CiPaw.09G032100 Carya illinoinensis HOM05D004743 ORTHO05D005698 2.3e-15 86.3 92 46.7
Os09g0279300 Oryza sativa ssp. japonica HOM05D004743 ORTHO05D005698 3.0e-15 85.9 149 35.6
Zm00001eb308440 Zea mays HOM05D004743 ORTHO05D005698 3.9e-15 85.5 137 36.5
C04p16220 Brassica napus HOM05D004743 ORTHO05D005698 2.0e-14 83.2 77 50.6
THA.LOC104824466 Tarenaya hassleriana HOM05D004743 ORTHO05D005698 2.2e-13 79.7 132 34.1
Eucgr.A02439 Eucalyptus grandis HOM05D004743 ORTHO05D005698 4.8e-13 78.6 107 43.0
C09p44920 Brassica napus HOM05D004743 ORTHO05D005698 4.2e-09 65.5 65 46.2
arahy.Tifrunner.gnm1.ann1.YRY7W4 Arachis hypogaea HOM05D004743 ORTHO05D005698 5.5e-09 65.1 66 43.9
arahy.Tifrunner.gnm1.ann1.MK9Y65 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-08 63.5 99 35.4
arahy.Tifrunner.gnm1.ann1.W4Y9B5 Arachis hypogaea HOM05D004743 ORTHO05D005698 1.6e-08 63.5 99 35.4
arahy.Tifrunner.gnm1.ann1.GN7FJD Arachis hypogaea HOM05D004743 ORTHO05D005698 2.7e-08 62.8 66 42.4
BcaC03g17937 Brassica carinata HOM05D004743 ORTHO05D005698 6.1e-08 61.6 145 32.4
arahy.Tifrunner.gnm1.ann1.HF75RM Arachis hypogaea HOM05D004743 ORTHO05D005698 1.8e-07 60.1 62 43.5
arahy.Tifrunner.gnm1.ann1.L5I9G2 Arachis hypogaea HOM05D004743 ORTHO05D005698 6.7e-07 58.2 62 41.9


User provided reference genes

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