Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0047 Marchantia polymorpha HOM05D003892 ORTHO05D004522 0.0e+00 1273.1 639 100.0
Pp3c26_8020 Physcomitrium patens HOM05D003892 ORTHO05D004522 1.6e-78 298.1 613 34.1
TAR633G1336 Trochodendron aralioides HOM05D003892 ORTHO05D004522 3.5e-70 270.4 573 34.6
ATR0580G241 Amborella trichopoda HOM05D003892 ORTHO05D004522 6.7e-69 266.2 576 33.7
GSVIVG01015854001 Vitis vinifera HOM05D003892 ORTHO05D004522 2.5e-68 264.2 651 32.4
AagrBONN_evm.TU.Sc2ySwM_228.3493 Anthoceros agrestis HOM05D003892 ORTHO05D004522 4.3e-68 263.5 366 39.3
Nn2g14423 Nelumbo nucifera HOM05D003892 ORTHO05D004522 5.7e-68 263.1 636 31.8
PSO210G1032 Papaver somniferum HOM05D003892 ORTHO05D004522 1.3e-67 261.9 592 32.6
QL07p026283 Quercus lobata HOM05D003892 ORTHO05D004522 1.1e-66 258.8 661 32.8
Potri.006G199200 Populus trichocarpa HOM05D003892 ORTHO05D004522 3.1e-66 257.3 647 34.3
PSO832G2838 Papaver somniferum HOM05D003892 ORTHO05D004522 5.3e-66 256.5 575 33.2
Pp3c4_31220 Physcomitrium patens HOM05D003892 ORTHO05D004522 5.3e-66 256.5 590 32.4
SMO351G0585 Selaginella moellendorffii HOM05D003892 ORTHO05D004522 6.9e-66 256.1 577 33.8
Lj1C1061G1 Lonicera japonica HOM05D003892 ORTHO05D004522 1.5e-65 255.0 582 35.4
Potri.016G065600 Populus trichocarpa HOM05D003892 ORTHO05D004522 2.6e-65 254.2 644 33.7
CSS0037074 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 5.9e-65 253.1 661 31.9
Duzib106G1451 Durio zibethinus HOM05D003892 ORTHO05D004522 2.9e-64 250.8 586 33.1
Hma1.2p1_0304F.1_g119340 Hydrangea macrophylla HOM05D003892 ORTHO05D004522 2.9e-64 250.8 639 31.6
Glyma.19G202400 Glycine max HOM05D003892 ORTHO05D004522 3.8e-64 250.4 668 31.7
Gohir.D04G093300 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-63 248.8 641 32.0
Gorai.009G395500 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.4e-63 248.4 633 32.5
COL.COLO4_29492 Corchorus olitorius HOM05D003892 ORTHO05D004522 1.9e-63 248.1 581 32.0
ECA233G3816 Erigeron canadensis HOM05D003892 ORTHO05D004522 2.5e-63 247.7 666 31.5
TAR636G2427 Trochodendron aralioides HOM05D003892 ORTHO05D004522 7.2e-63 246.1 345 42.0
Manes.08G037500 Manihot esculenta HOM05D003892 ORTHO05D004522 9.3e-63 245.7 626 32.7
Thecc.05G110400 Theobroma cacao HOM05D003892 ORTHO05D004522 9.3e-63 245.7 581 31.7
FAN05G2923 Fragaria x ananassa HOM05D003892 ORTHO05D004522 4.6e-62 243.4 648 31.2
ClCG10G017850 Citrullus lanatus HOM05D003892 ORTHO05D004522 1.0e-61 242.3 654 32.3
Aqoxy1G00583 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 1.3e-61 241.9 582 32.5
TPR.G34451 Trifolium pratense HOM05D003892 ORTHO05D004522 1.3e-61 241.9 643 31.4
HanXRQChr02g0052851 Helianthus annuus HOM05D003892 ORTHO05D004522 2.3e-61 241.1 566 31.8
HanXRQChr13g0398781 Helianthus annuus HOM05D003892 ORTHO05D004522 2.3e-61 241.1 604 32.1
Lj1g0007585 Lotus japonicus HOM05D003892 ORTHO05D004522 2.3e-61 241.1 614 32.7
Oeu058130.1 Olea europaea HOM05D003892 ORTHO05D004522 2.3e-61 241.1 689 31.3
Actinidia03963 Actinidia chinensis HOM05D003892 ORTHO05D004522 3.9e-61 240.4 613 32.1
arahy.Tifrunner.gnm1.ann1.H4389H Arachis hypogaea HOM05D003892 ORTHO05D004522 5.1e-61 240.0 680 31.5
Ca_09081_v3 Cicer arietinum L. HOM05D003892 ORTHO05D004522 8.8e-61 239.2 612 32.2
Zm00001eb032200 Zea mays HOM05D003892 ORTHO05D004522 8.8e-61 239.2 588 32.3
FAN02G1525 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-60 238.8 648 31.5
Atru.chr8.1281 Acer truncatum HOM05D003892 ORTHO05D004522 1.9e-60 238.0 614 31.8
MELO3C009588.2 Cucumis melo HOM05D003892 ORTHO05D004522 1.9e-60 238.0 592 33.4
TWI15G0645 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.9e-60 238.0 646 30.3
Duzib128G1914 Durio zibethinus HOM05D003892 ORTHO05D004522 5.7e-60 236.5 599 32.2
Prupe.7G089700 Prunus persica HOM05D003892 ORTHO05D004522 5.7e-60 236.5 663 29.6
Cfa017615 Carpinus fangiana HOM05D003892 ORTHO05D004522 9.7e-60 235.7 642 31.8
MBI11_g43834_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 9.7e-60 235.7 659 31.0
Gohir.A01G199500 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.3e-59 235.3 571 31.5
MD12G1046200 Malus domestica HOM05D003892 ORTHO05D004522 1.3e-59 235.3 654 30.4
Psat3g027080 Pisum sativum HOM05D003892 ORTHO05D004522 1.3e-59 235.3 651 31.0
Ciclev10011278m.g Citrus clementina HOM05D003892 ORTHO05D004522 1.7e-59 235.0 599 31.6
Rhsim03G0058500 Rhododendron simsii HOM05D003892 ORTHO05D004522 1.7e-59 235.0 639 30.0
Aqoxy2G02397 Aquilegia oxysepala HOM05D003892 ORTHO05D004522 2.2e-59 234.6 630 31.0
DCAR_013462 Daucus carota HOM05D003892 ORTHO05D004522 2.2e-59 234.6 583 30.4
Medtr7g106900 Medicago truncatula HOM05D003892 ORTHO05D004522 2.8e-59 234.2 649 31.6
MSTRG.5909 Avicennia marina HOM05D003892 ORTHO05D004522 1.1e-58 232.3 627 31.6
Gohir.D01G189600 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.1e-58 232.3 563 31.1
Gorai.002G233300 Gossypium raimondii HOM05D003892 ORTHO05D004522 1.1e-58 232.3 572 31.1
THA.LOC104825242 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.8e-58 231.5 647 30.1
HPP92_013933 Vanilla planifolia HOM05D003892 ORTHO05D004522 1.8e-58 231.5 656 30.3
Lalb_Chr01g0017711 Lupinus albus HOM05D003892 ORTHO05D004522 2.4e-58 231.1 666 30.6
SGA_v2.0_scaffold112G31566 Striga asiatica HOM05D003892 ORTHO05D004522 2.4e-58 231.1 640 31.6
RcHm_v2.0_Chr3g0477411 Rosa chinensis HOM05D003892 ORTHO05D004522 4.1e-58 230.3 652 31.4
CsaV3_3G038440 Cucumis sativus L. HOM05D003892 ORTHO05D004522 5.3e-58 229.9 591 32.3
Glyma.03G205000 Glycine max HOM05D003892 ORTHO05D004522 5.3e-58 229.9 617 31.3
CANSAT64G1569 Cannabis sativa HOM05D003892 ORTHO05D004522 6.9e-58 229.6 600 32.3
Phvul.001G198500 Phaseolus vulgaris HOM05D003892 ORTHO05D004522 6.9e-58 229.6 655 30.8
CAN.G388.52 Capsicum annuum HOM05D003892 ORTHO05D004522 9.1e-58 229.2 637 31.9
CiPaw.10G021500 Carya illinoinensis HOM05D003892 ORTHO05D004522 2.0e-57 228.0 669 31.4
Os12g0621700 Oryza sativa ssp. japonica HOM05D003892 ORTHO05D004522 3.4e-57 227.3 579 31.8
Solyc01g006700.3 Solanum lycopersicum HOM05D003892 ORTHO05D004522 3.4e-57 227.3 583 32.4
Sed0022353 Sechium edule HOM05D003892 ORTHO05D004522 5.9e-57 226.5 646 30.0
Migut.J00728 Erythranthe guttata HOM05D003892 ORTHO05D004522 1.3e-56 225.3 642 31.5
SalBow1G7123 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.3e-56 225.3 581 31.8
Sopen01g002690 Solanum pennellii HOM05D003892 ORTHO05D004522 1.3e-56 225.3 570 32.5
PGR004G2391 Punica granatum HOM05D003892 ORTHO05D004522 1.7e-56 224.9 648 31.5
SalBow1G1519 Salvia bowleyana HOM05D003892 ORTHO05D004522 1.7e-56 224.9 579 31.4
arahy.Tifrunner.gnm1.ann1.IGZ3F9 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.9e-56 224.2 642 30.1
CDE07G1113 Ceratophyllum demersum HOM05D003892 ORTHO05D004522 5.0e-56 223.4 638 30.1
AUR62038416 Chenopodium quinoa HOM05D003892 ORTHO05D004522 5.0e-56 223.4 579 29.9
Eucgr.A02543 Eucalyptus grandis HOM05D003892 ORTHO05D004522 5.0e-56 223.4 578 32.0
FAN05G3327 Fragaria x ananassa HOM05D003892 ORTHO05D004522 5.0e-56 223.4 679 29.7
FAN14G4612 Fragaria x ananassa HOM05D003892 ORTHO05D004522 1.1e-55 222.2 677 30.4
Lj6g0017825 Lotus japonicus HOM05D003892 ORTHO05D004522 1.4e-55 221.9 638 30.1
THA.LOC104824220 Tarenaya hassleriana HOM05D003892 ORTHO05D004522 1.4e-55 221.9 652 30.2
PGSC0003DMG400021344 Solanum tuberosum HOM05D003892 ORTHO05D004522 1.9e-55 221.5 578 31.5
Lalb_Chr25g0287841 Lupinus albus HOM05D003892 ORTHO05D004522 2.5e-55 221.1 637 30.6
AUR62036307 Chenopodium quinoa HOM05D003892 ORTHO05D004522 3.2e-55 220.7 583 30.7
MD14G1044900 Malus domestica HOM05D003892 ORTHO05D004522 5.5e-55 219.9 651 29.3
FvH4_6g21040 Fragaria vesca HOM05D003892 ORTHO05D004522 9.4e-55 219.2 575 31.5
VMungo1383G0340 Vigna mungo HOM05D003892 ORTHO05D004522 9.4e-55 219.2 633 30.5
Carub.0005s2135 Capsella rubella HOM05D003892 ORTHO05D004522 2.1e-54 218.0 638 29.8
Aa31LG11G3840 Aethionema arabicum HOM05D003892 ORTHO05D004522 2.7e-54 217.6 619 29.7
Cc06_g06980 Coffea canephora HOM05D003892 ORTHO05D004522 4.7e-54 216.9 623 29.9
AT3G54750 Arabidopsis thaliana HOM05D003892 ORTHO05D004522 6.1e-54 216.5 653 29.1
Sabra06G0153100 Salix brachista HOM05D003892 ORTHO05D004522 1.4e-53 215.3 642 32.1
arahy.Tifrunner.gnm1.ann1.P5VIE6 Arachis hypogaea HOM05D003892 ORTHO05D004522 3.0e-53 214.2 650 30.3
Lsat_1_v5_gn_6_34240 Lactuca sativa HOM05D003892 ORTHO05D004522 3.0e-53 214.2 607 31.8
Dinv25081 Davidia involucrata HOM05D003892 ORTHO05D004522 3.9e-53 213.8 504 31.5
Thhalv10010226m.g Eutrema salsugineum HOM05D003892 ORTHO05D004522 3.9e-53 213.8 568 30.8
EL10Ac5g11803 Beta vulgaris HOM05D003892 ORTHO05D004522 8.8e-53 212.6 560 28.9
BolC8t50600H Brassica oleracea HOM05D003892 ORTHO05D004522 8.8e-53 212.6 560 30.9
BcaC07g39789 Brassica carinata HOM05D003892 ORTHO05D004522 1.1e-52 212.2 569 30.9
A09p47680 Brassica napus HOM05D003892 ORTHO05D004522 1.1e-52 212.2 574 30.3
BraA09t40224Z Brassica rapa HOM05D003892 ORTHO05D004522 1.5e-52 211.8 575 30.3
AL5G35820 Arabidopsis lyrata HOM05D003892 ORTHO05D004522 5.7e-52 209.9 645 29.0
CARHR164690 Cardamine hirsuta HOM05D003892 ORTHO05D004522 7.4e-52 209.5 564 30.3
BraA04t16218Z Brassica rapa HOM05D003892 ORTHO05D004522 1.3e-51 208.8 630 30.0
Lsat_1_v5_gn_2_121661 Lactuca sativa HOM05D003892 ORTHO05D004522 2.8e-51 207.6 589 31.6
BcaC02g09701 Brassica carinata HOM05D003892 ORTHO05D004522 4.8e-51 206.8 627 29.3
ECA238G3852 Erigeron canadensis HOM05D003892 ORTHO05D004522 4.8e-51 206.8 620 28.4
Hund10790 Selenicereus undatus HOM05D003892 ORTHO05D004522 4.8e-51 206.8 651 30.1
C08p29890 Brassica napus HOM05D003892 ORTHO05D004522 1.1e-50 205.7 574 29.8
Sp5g07700 Schrenkiella parvula HOM05D003892 ORTHO05D004522 1.4e-50 205.3 649 28.5
TWI81G0594 Tripterygium wilfordii HOM05D003892 ORTHO05D004522 1.8e-50 204.9 502 31.5
Ah.12g059580 Amaranthus hybridus HOM05D003892 ORTHO05D004522 2.4e-50 204.5 584 29.5
A04p05070 Brassica napus HOM05D003892 ORTHO05D004522 3.1e-50 204.1 630 29.5
C04p37570 Brassica napus HOM05D003892 ORTHO05D004522 3.1e-50 204.1 626 29.1
BcaB01g00163 Brassica carinata HOM05D003892 ORTHO05D004522 5.3e-50 203.4 690 27.8
Sc22g0003030 Simmondsia chinensis HOM05D003892 ORTHO05D004522 1.2e-49 202.2 587 30.5
SGA_v2.0_scaffold31G12827 Striga asiatica HOM05D003892 ORTHO05D004522 1.5e-49 201.8 623 28.4
Actinidia37779 Actinidia chinensis HOM05D003892 ORTHO05D004522 4.5e-49 200.3 258 45.0
Haze_20130 Corylus avellana HOM05D003892 ORTHO05D004522 5.9e-49 199.9 648 29.6
MBI11_g33439_MAGBIO Magnolia biondii HOM05D003892 ORTHO05D004522 5.9e-49 199.9 340 37.4
arahy.Tifrunner.gnm1.ann1.L9LT45 Arachis hypogaea HOM05D003892 ORTHO05D004522 2.9e-48 197.6 673 28.1
BcaB02g08458 Brassica carinata HOM05D003892 ORTHO05D004522 2.9e-48 197.6 636 28.8
Peaxi162Scf00210g00093 Petunia axillaris HOM05D003892 ORTHO05D004522 6.5e-48 196.4 624 29.5
Gohir.A04G055942 Gossypium hirsutum HOM05D003892 ORTHO05D004522 2.5e-47 194.5 326 38.3
Peaxi162Scf00751g00063 Petunia axillaris HOM05D003892 ORTHO05D004522 3.2e-47 194.1 624 29.3
Sabra16G0067100 Salix brachista HOM05D003892 ORTHO05D004522 5.5e-47 193.4 642 30.4
Sed0022528 Sechium edule HOM05D003892 ORTHO05D004522 1.2e-46 192.2 633 30.0
Nitab4.5_0003430g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 3.6e-46 190.7 503 31.4
Aa31LG2G20030 Aethionema arabicum HOM05D003892 ORTHO05D004522 5.2e-45 186.8 436 32.6
CBR_g20103 Chara braunii HOM05D003892 ORTHO05D004522 8.2e-43 179.5 519 29.9
Medtr7g029625 Medicago truncatula HOM05D003892 ORTHO05D004522 3.1e-42 177.6 292 40.8
Dinv11899 Davidia involucrata HOM05D003892 ORTHO05D004522 2.1e-38 164.9 414 32.1
Nitab4.5_0000300g0030 Nicotiana tabacum HOM05D003892 ORTHO05D004522 4.0e-37 160.6 202 44.1
Cpa.g.sc222.13 Carica papaya HOM05D003892 ORTHO05D004522 2.5e-31 141.4 243 38.3
unitig_749.g14208 Utricularia gibba HOM05D003892 ORTHO05D004522 2.7e-30 137.9 182 41.2
Sed0005279 Sechium edule HOM05D000521 ORTHO05D004522 1.2e-28 132.5 389 31.6
vmacro07513 Vaccinium macrocarpon HOM05D003892 ORTHO05D004522 1.2e-28 132.5 286 35.0
unitig_26.g9151 Utricularia gibba HOM05D003892 ORTHO05D004522 2.0e-28 131.7 199 39.7
arahy.Tifrunner.gnm1.ann1.75SLRD Arachis hypogaea HOM05D003892 ORTHO05D004522 9.5e-23 112.8 218 34.4
Cfa017831 Carpinus fangiana HOM05D003892 ORTHO05D004522 8.0e-22 109.8 216 36.1
GSVIVG01020969001 Vitis vinifera HOM05D003892 ORTHO05D004522 3.4e-20 104.4 378 27.0
CSS0004478 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.7e-19 102.1 380 27.1
GSVIVG01020973001 Vitis vinifera HOM05D003892 ORTHO05D004522 1.7e-16 92.0 114 43.9
CSS0016552 Camellia sinensis var. sinensis HOM05D003892 ORTHO05D004522 1.1e-15 89.4 164 34.8
Gohir.D07G211433 Gossypium hirsutum HOM05D003892 ORTHO05D004522 1.2e-14 85.9 397 26.7
SEGI_30208 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 4.7e-14 84.0 93 47.3
GSVIVG01020966001 Vitis vinifera HOM05D003892 ORTHO05D004522 4.7e-14 84.0 95 47.4
HPP92_012152 Vanilla planifolia HOM05D003892 ORTHO05D004522 2.3e-13 81.6 117 42.7
SHI28320 Sapria himalayana HOM05D003892 ORTHO05D004522 5.2e-13 80.5 370 25.1
Nitab4.5_0000429g0010 Nicotiana tabacum HOM05D003892 ORTHO05D004522 7.8e-09 66.6 278 27.7
SEGI_25684 Sequoiadendron giganteum HOM05D003892 ORTHO05D004522 1.1e-07 62.8 245 29.0


User provided reference genes

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