Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0025 Marchantia polymorpha HOM05D002335 ORTHO05D006282 6.4e-219 763.8 402 100.0
Pp3c22_13730 Physcomitrium patens HOM05D002335 ORTHO05D006282 3.9e-83 312.8 366 50.5
Pp3c2_6470 Physcomitrium patens HOM05D002335 ORTHO05D006282 1.5e-82 310.8 354 49.4
Hma1.2p1_0169F.1_g074510 Hydrangea macrophylla HOM05D002335 ORTHO05D006282 6.1e-76 288.9 337 47.2
Ciclev10008755m.g Citrus clementina HOM05D002335 ORTHO05D006282 1.1e-74 284.6 344 45.6
ATR0598G025 Amborella trichopoda HOM05D002335 ORTHO05D006282 1.5e-74 284.3 324 49.1
Glyma.15G177700 Glycine max HOM05D002335 ORTHO05D006282 5.7e-74 282.3 323 46.7
Phvul.009G227200 Phaseolus vulgaris HOM05D002335 ORTHO05D006282 1.4e-72 277.7 325 44.9
Solyc12g009100.2 Solanum lycopersicum HOM05D002335 ORTHO05D006282 1.8e-72 277.3 324 47.5
Sopen12g004050 Solanum pennellii HOM05D002335 ORTHO05D006282 1.8e-72 277.3 324 47.8
Cfa002987 Carpinus fangiana HOM05D002335 ORTHO05D006282 3.1e-72 276.6 324 46.6
FvH4_1g08690 Fragaria vesca HOM05D002335 ORTHO05D006282 4.1e-72 276.2 324 48.8
Gohir.D13G196375 Gossypium hirsutum HOM05D002335 ORTHO05D006282 2.0e-71 273.9 336 45.2
VMungo1309G0226 Vigna mungo HOM05D002335 ORTHO05D006282 3.4e-71 273.1 322 44.1
Manes.16G095200 Manihot esculenta HOM05D002335 ORTHO05D006282 4.5e-71 272.7 338 44.7
TPR.G27760 Trifolium pratense HOM05D002335 ORTHO05D006282 4.5e-71 272.7 322 44.4
AUR62028934 Chenopodium quinoa HOM05D002335 ORTHO05D006282 5.9e-71 272.3 322 45.0
Migut.J00924 Erythranthe guttata HOM05D002335 ORTHO05D006282 1.3e-70 271.2 338 45.9
PSO724G0129 Papaver somniferum HOM05D002335 ORTHO05D006282 1.3e-70 271.2 331 46.8
Peaxi162Scf00928g00036 Petunia axillaris HOM05D002335 ORTHO05D006282 1.3e-70 271.2 321 46.4
Sed0016034 Sechium edule HOM05D002335 ORTHO05D006282 2.9e-70 270.0 344 45.3
PSO135G0390 Papaver somniferum HOM05D002335 ORTHO05D006282 3.8e-70 269.6 331 46.2
Gorai.013G224300 Gossypium raimondii HOM05D002335 ORTHO05D006282 5.0e-70 269.2 337 45.1
Glyma.09G069700 Glycine max HOM05D002335 ORTHO05D006282 6.5e-70 268.9 323 44.9
CiPaw.04G143000 Carya illinoinensis HOM05D002335 ORTHO05D006282 1.1e-69 268.1 324 45.7
Hund26035 Selenicereus undatus HOM05D002335 ORTHO05D006282 1.1e-69 268.1 278 49.6
TAR383G0969 Trochodendron aralioides HOM05D002335 ORTHO05D006282 1.4e-69 267.7 342 46.2
Potri.018G056500 Populus trichocarpa HOM05D002335 ORTHO05D006282 1.9e-69 267.3 328 45.7
ClCG03G015070 Citrullus lanatus HOM05D002335 ORTHO05D006282 5.5e-69 265.8 343 43.7
MBI19_g16223_MAGBIO Magnolia biondii HOM05D002335 ORTHO05D006282 5.5e-69 265.8 356 44.7
Gohir.A13G190800 Gossypium hirsutum HOM05D002335 ORTHO05D006282 1.6e-68 264.2 336 44.0
Nn8g38636 Nelumbo nucifera HOM05D002335 ORTHO05D006282 1.6e-68 264.2 323 46.7
THA.LOC104815334 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 6.1e-68 262.3 323 44.0
Aa31sc133G10 Aethionema arabicum HOM05D002335 ORTHO05D006282 1.4e-67 261.2 324 44.1
SalBow6G4624 Salvia bowleyana HOM05D002335 ORTHO05D006282 2.3e-67 260.4 276 49.6
Lj6g0009960 Lotus japonicus HOM05D002335 ORTHO05D006282 3.9e-67 259.6 323 44.3
Sp6g23900 Schrenkiella parvula HOM05D002335 ORTHO05D006282 3.9e-67 259.6 322 44.4
BcaC06g35950 Brassica carinata HOM05D002335 ORTHO05D006282 5.1e-67 259.2 323 44.6
C07p09370 Brassica napus HOM05D002335 ORTHO05D006282 5.1e-67 259.2 323 44.6
BolC7t41360H Brassica oleracea HOM05D002335 ORTHO05D006282 5.1e-67 259.2 323 44.6
BraA03t10325Z Brassica rapa HOM05D002335 ORTHO05D006282 6.7e-67 258.8 322 44.7
AUR62025250 Chenopodium quinoa HOM05D002335 ORTHO05D006282 8.8e-67 258.5 277 48.0
HanXRQChr04g0126011 Helianthus annuus HOM05D002335 ORTHO05D006282 8.8e-67 258.5 325 44.9
BcaB06g26879 Brassica carinata HOM05D002335 ORTHO05D006282 1.1e-66 258.1 323 44.6
C03p11680 Brassica napus HOM05D002335 ORTHO05D006282 1.5e-66 257.7 322 44.4
Eucgr.C03263 Eucalyptus grandis HOM05D002335 ORTHO05D006282 2.0e-66 257.3 306 45.8
Thhalv10014003m.g Eutrema salsugineum HOM05D002335 ORTHO05D006282 2.6e-66 256.9 322 44.7
SEGI_06962 Sequoiadendron giganteum HOM05D002335 ORTHO05D006282 3.3e-66 256.5 349 44.4
Zm00001eb256890 Zea mays HOM05D002335 ORTHO05D006282 3.3e-66 256.5 322 44.4
AL6G32120 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 4.4e-66 256.1 341 45.2
A07p06320 Brassica napus HOM05D002335 ORTHO05D006282 4.4e-66 256.1 323 44.3
Eucgr.C03328 Eucalyptus grandis HOM05D002335 ORTHO05D006282 9.7e-66 255.0 314 44.6
ECA236G4601 Erigeron canadensis HOM05D002335 ORTHO05D006282 1.3e-65 254.6 323 42.1
EL10Ac8g19056 Beta vulgaris HOM05D002335 ORTHO05D006282 2.8e-65 253.4 363 40.8
Carub.0006s1891 Capsella rubella HOM05D002335 ORTHO05D006282 2.8e-65 253.4 323 45.2
THA.LOC104799620 Tarenaya hassleriana HOM05D002335 ORTHO05D006282 3.7e-65 253.1 322 44.7
TWI34G0307 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 6.3e-65 252.3 340 43.8
Aqoxy7G04129 Aquilegia oxysepala HOM05D002335 ORTHO05D006282 8.2e-65 251.9 354 43.8
Nitab4.5_0011754g0010 Nicotiana tabacum HOM05D002335 ORTHO05D006282 8.2e-65 251.9 338 44.7
AT5G20580 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 1.1e-64 251.5 323 44.9
BraA07t28424Z Brassica rapa HOM05D002335 ORTHO05D006282 1.2e-63 248.1 339 42.5
Haze_26014 Corylus avellana HOM05D002335 ORTHO05D006282 2.0e-63 247.3 267 49.1
PGR044G1875 Punica granatum HOM05D002335 ORTHO05D006282 2.0e-63 247.3 277 48.0
Dinv25558 Davidia involucrata HOM05D002335 ORTHO05D006282 2.6e-63 246.9 324 43.5
Sp3g24570 Schrenkiella parvula HOM05D002335 ORTHO05D006282 2.6e-63 246.9 338 42.0
Manes.03G040500 Manihot esculenta HOM05D002335 ORTHO05D006282 5.9e-63 245.7 324 43.5
CSS0005090 Camellia sinensis var. sinensis HOM05D002335 ORTHO05D006282 1.7e-62 244.2 336 42.6
Lsat_1_v5_gn_8_86481 Lactuca sativa HOM05D002335 ORTHO05D006282 1.7e-62 244.2 324 42.9
HPP92_004364 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.7e-62 244.2 324 44.4
Ca_02205_v3 Cicer arietinum L. HOM05D002335 ORTHO05D006282 2.9e-62 243.4 336 41.4
Thecc.09G076700 Theobroma cacao HOM05D002335 ORTHO05D006282 3.2e-61 240.0 324 42.6
Carub.0003s2712 Capsella rubella HOM05D002335 ORTHO05D006282 4.2e-61 239.6 323 42.7
MD02G1091400 Malus domestica HOM05D002335 ORTHO05D006282 5.5e-61 239.2 324 42.3
Sabra18G0052300 Salix brachista HOM05D002335 ORTHO05D006282 5.5e-61 239.2 407 36.9
Cc06_g12190 Coffea canephora HOM05D002335 ORTHO05D006282 7.2e-61 238.8 338 42.3
AL3G43580 Arabidopsis lyrata HOM05D002335 ORTHO05D006282 9.4e-61 238.4 324 42.6
BolC3t13639H Brassica oleracea HOM05D005537 ORTHO05D006776 1.2e-60 238.0 301 45.8
Medtr2g041690 Medicago truncatula HOM05D002335 ORTHO05D006282 1.2e-60 238.0 337 40.1
SGA_v2.0_scaffold308G48076 Striga asiatica HOM05D002335 ORTHO05D006282 1.2e-60 238.0 294 46.3
GSVIVG01015081001 Vitis vinifera HOM05D002335 ORTHO05D006282 3.6e-60 236.5 337 43.3
Dinv42395 Davidia involucrata HOM05D002335 ORTHO05D006282 6.1e-60 235.7 336 41.7
COL.COLO4_18096 Corchorus olitorius HOM05D002335 ORTHO05D006282 1.0e-59 235.0 322 41.6
CARHR192220 Cardamine hirsuta HOM05D002335 ORTHO05D006282 1.8e-59 234.2 288 46.5
Duzib187G0696 Durio zibethinus HOM05D002335 ORTHO05D006282 2.3e-59 233.8 323 41.8
Psat1g134320 Pisum sativum HOM05D002335 ORTHO05D006282 6.7e-59 232.3 273 45.1
MSTRG.19458 Avicennia marina HOM05D002335 ORTHO05D006282 1.1e-58 231.5 338 40.5
Actinidia29935 Actinidia chinensis HOM05D002335 ORTHO05D006282 1.5e-58 231.1 323 42.4
Duzib168G0796 Durio zibethinus HOM05D002335 ORTHO05D006282 2.0e-58 230.7 323 40.2
RcHm_v2.0_Chr2g0095141 Rosa chinensis HOM05D002335 ORTHO05D006282 3.3e-58 229.9 323 42.1
FAN28G1803 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.7e-57 227.6 324 42.3
FAN26G1551 Fragaria x ananassa HOM05D002335 ORTHO05D006282 3.7e-57 226.5 324 42.0
AT2G06005 Arabidopsis thaliana HOM05D002335 ORTHO05D006282 3.1e-56 223.4 270 45.6
vmacro06343 Vaccinium macrocarpon HOM05D002335 ORTHO05D006282 4.1e-56 223.0 374 40.1
CARHR103630 Cardamine hirsuta HOM05D002335 ORTHO05D006282 9.1e-56 221.9 270 44.8
MELO3C015522.2 Cucumis melo HOM05D002335 ORTHO05D006282 3.8e-54 216.5 343 38.5
CsaV3_1G041060 Cucumis sativus L. HOM05D002335 ORTHO05D006282 6.5e-54 215.7 343 38.2
CANSAT56G2952 Cannabis sativa HOM05D002335 ORTHO05D006282 1.5e-53 214.5 336 39.0
SMO358G0254 Selaginella moellendorffii HOM05D002335 ORTHO05D006282 9.4e-53 211.8 195 61.5
SHI23809 Sapria himalayana HOM05D002335 ORTHO05D006282 1.2e-52 211.5 237 47.7
HPP92_004366 Vanilla planifolia HOM05D002335 ORTHO05D006282 1.4e-51 208.0 324 40.4
Aa31LG1G14100 Aethionema arabicum HOM05D002335 ORTHO05D006282 2.3e-51 207.2 416 35.6
Sopen07g021360 Solanum pennellii HOM05D002335 ORTHO05D006282 8.8e-51 205.3 324 39.8
MD15G1217700 Malus domestica HOM05D002335 ORTHO05D006282 1.2e-50 204.9 306 39.9
Atru.chr7.1708 Acer truncatum HOM05D002335 ORTHO05D006282 2.6e-50 203.8 253 43.1
Lsat_1_v5_gn_7_35121 Lactuca sativa HOM05D002335 ORTHO05D006692 1.1e-48 198.4 343 36.7
QL11p000781 Quercus lobata HOM05D002335 ORTHO05D006282 1.8e-48 197.6 257 42.8
Lj7C687T14 Lonicera japonica HOM05D002335 ORTHO05D006282 2.4e-48 197.2 252 47.2
CDE02G0868 Ceratophyllum demersum HOM05D002335 ORTHO05D006282 3.1e-48 196.8 232 48.3
arahy.Tifrunner.gnm1.ann1.UHGN3W Arachis hypogaea HOM05D002335 ORTHO05D006282 1.6e-47 194.5 326 35.3
FAN23G1616 Fragaria x ananassa HOM05D002335 ORTHO05D006282 1.6e-47 194.5 235 48.5
Nitab4.5_0000073g0170 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.3e-46 191.4 390 34.4
CAN.G1661.12 Capsicum annuum HOM05D002335 ORTHO05D006282 1.5e-45 188.0 335 36.7
Rhsim03G0227400 Rhododendron simsii HOM05D002335 ORTHO05D005129 4.2e-45 186.4 377 36.3
Sc18g0002560 Simmondsia chinensis HOM05D002335 ORTHO05D006282 8.0e-44 182.2 245 43.7
Prupe.7G198700 Prunus persica HOM05D002335 ORTHO05D006282 1.0e-43 181.8 323 36.8
Peaxi162Scf00127g01814 Petunia axillaris HOM05D002335 ORTHO05D006282 1.5e-42 177.9 270 42.6
TWI63G1279 Tripterygium wilfordii HOM05D002335 ORTHO05D006282 2.0e-42 177.6 323 36.8
DCAR_028335 Daucus carota HOM05D002335 ORTHO05D006282 7.5e-42 175.6 193 50.8
AagrBONN_evm.TU.Sc2ySwM_344.5493 Anthoceros agrestis HOM05D002335 ORTHO05D006282 1.7e-41 174.5 289 40.1
Psat3g025000 Pisum sativum HOM05D002335 ORTHO05D006282 1.7e-41 174.5 232 39.2
Nitab4.5_0009436g0040 Nicotiana tabacum HOM05D002335 ORTHO05D006282 9.1e-40 168.7 401 31.7
Lalb_Chr23g0276381 Lupinus albus HOM05D002335 ORTHO05D006282 4.7e-36 156.4 127 64.6
Cpa.g.sc28.33 Carica papaya HOM05D002335 ORTHO05D006282 5.4e-32 142.9 254 35.8
CAN.G404.48 Capsicum annuum HOM05D002335 ORTHO05D006282 2.3e-30 137.5 242 36.8
CBR_g26318 Chara braunii HOM05D002335 ORTHO05D006282 7.3e-29 132.5 217 39.6
Lalb_Chr07g0181181 Lupinus albus HOM05D002335 ORTHO05D006282 2.0e-26 124.4 153 46.4
Lalb_Chr23g0276371 Lupinus albus HOM05D002335 ORTHO05D006282 2.4e-24 117.5 187 33.7
Cpa.g.sc28.37 Carica papaya HOM05D002335 ORTHO05D006282 3.2e-24 117.1 96 64.6
Nitab4.5_0000343g0210 Nicotiana tabacum HOM05D002335 ORTHO05D006282 3.9e-22 110.2 92 60.9
Lalb_Chr07g0181191 Lupinus albus HOM05D002335 ORTHO05D006282 6.6e-22 109.4 221 29.9
arahy.Tifrunner.gnm1.ann1.3UYF95 Arachis hypogaea HOM05D002335 ORTHO05D006282 1.9e-21 107.8 206 30.1
Actinidia38481 Actinidia chinensis HOM05D002335 ORTHO05D006282 9.5e-21 105.5 110 54.5
Nitab4.5_0000343g0220 Nicotiana tabacum HOM05D002335 ORTHO05D006282 1.6e-15 88.2 117 42.7
MD02G1091600 Malus domestica HOM05D002335 ORTHO05D006282 3.5e-15 87.0 119 37.8
Ah.14g084930 Amaranthus hybridus HOM05D002335 ORTHO05D006282 1.7e-14 84.7 70 61.4
Actinidia38482 Actinidia chinensis HOM05D002335 ORTHO05D006282 5.0e-14 83.2 141 34.0
Medtr2g041390 Medicago truncatula HOM05D002335 ORTHO05D006282 1.5e-10 71.6 108 41.7
PRCOL_00002582 Prasinoderma coloniale HOM05D002335 ORTHO05D006282 2.0e-10 71.2 283 27.6
Cpa.g.c47777 Carica papaya HOM05D002335 ORTHO05D006282 7.5e-10 69.3 51 68.6
Psat6g064600 Pisum sativum HOM05D004726 ORTHO05D005986 2.4e-08 64.3 53 58.5
PGSC0003DMG400019032 Solanum tuberosum HOM05D002335 ORTHO05D006282 2.7e-07 60.8 48 60.4
PSO210G7126 Papaver somniferum HOM05D002335 ORTHO05D006282 2.3e-06 57.8 61 42.6


User provided reference genes

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