Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0011s0011 Marchantia polymorpha HOM05D004805 ORTHO05D005756 0.0e+00 1302.3 707 100.0
AagrBONN_evm.TU.Sc2ySwM_362.484 Anthoceros agrestis HOM05D004805 ORTHO05D005756 2.3e-155 553.5 421 63.9
Pp3c20_23380 Physcomitrium patens HOM05D004805 ORTHO05D005756 6.1e-148 528.9 629 51.5
Pp3c3_17230 Physcomitrium patens HOM05D004805 ORTHO05D005756 2.3e-147 526.9 417 63.5
Pp3c10_25720 Physcomitrium patens HOM05D004805 ORTHO05D005756 8.8e-147 525.0 434 61.3
Pp3c13_13680 Physcomitrium patens HOM05D004805 ORTHO05D005756 1.6e-143 514.2 425 61.4
AagrBONN_evm.TU.Sc2ySwM_228.3487 Anthoceros agrestis HOM05D004805 ORTHO05D005756 3.0e-139 500.0 415 59.5
TAR626G0989 Trochodendron aralioides HOM05D004805 ORTHO05D005756 1.3e-76 292.0 254 58.7
Glyma.17G150300 Glycine max HOM05D004805 ORTHO05D005756 9.0e-75 285.8 243 57.6
BcaB01g04372 Brassica carinata HOM05D004805 ORTHO05D005756 1.2e-74 285.4 240 59.2
Glyma.14G013400 Glycine max HOM05D004805 ORTHO05D005756 2.0e-74 284.6 245 56.7
Aqoxy4G03118 Aquilegia oxysepala HOM05D004805 ORTHO05D005756 2.6e-74 284.3 242 58.7
Peaxi162Scf00139g01316 Petunia axillaris HOM05D004805 ORTHO05D005756 1.0e-73 282.3 242 57.9
THA.LOC104811668 Tarenaya hassleriana HOM05D004805 ORTHO05D005756 1.0e-73 282.3 238 58.4
CANSAT11G2385 Cannabis sativa HOM05D004805 ORTHO05D005756 1.7e-73 281.6 239 59.0
CAN.G623.13 Capsicum annuum HOM05D004805 ORTHO05D005756 2.9e-73 280.8 244 58.2
Phvul.008G279200 Phaseolus vulgaris HOM05D004805 ORTHO05D005756 2.9e-73 280.8 246 56.9
BcaC04g20199 Brassica carinata HOM05D004805 ORTHO05D005756 3.8e-73 280.4 238 57.1
RcHm_v2.0_Chr7g0241681 Rosa chinensis HOM05D004805 ORTHO05D005756 3.8e-73 280.4 238 57.6
ClCG10G004450 Citrullus lanatus HOM05D004805 ORTHO05D005756 4.9e-73 280.0 243 58.0
PGR142G3095 Punica granatum HOM05D004805 ORTHO05D005756 6.5e-73 279.6 238 56.7
Duzib268G0855 Durio zibethinus HOM05D004805 ORTHO05D005756 8.4e-73 279.3 238 58.8
TPR.G8592 Trifolium pratense HOM05D004805 ORTHO05D005756 1.4e-72 278.5 243 56.0
CiPaw.12G138400 Carya illinoinensis HOM05D004805 ORTHO05D005756 1.9e-72 278.1 243 55.6
Nn1g07520 Nelumbo nucifera HOM05D004805 ORTHO05D005756 2.5e-72 277.7 243 58.0
CARHR269130 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.2e-72 277.3 238 55.9
DCAR_013232 Daucus carota HOM05D004805 ORTHO05D005756 3.2e-72 277.3 238 58.0
Lalb_Chr09g0322761 Lupinus albus HOM05D004805 ORTHO05D005756 4.2e-72 276.9 244 56.1
Aa31LG3G11710 Aethionema arabicum HOM05D004805 ORTHO05D005756 5.5e-72 276.6 238 57.6
Cfa020188 Carpinus fangiana HOM05D004805 ORTHO05D005756 5.5e-72 276.6 243 56.4
FAN16G0962 Fragaria x ananassa HOM05D004805 ORTHO05D005756 5.5e-72 276.6 255 54.9
PSO832G0973 Papaver somniferum HOM05D004805 ORTHO05D005756 5.5e-72 276.6 238 55.0
Sed0016007 Sechium edule HOM05D004805 ORTHO05D005756 7.1e-72 276.2 250 56.0
Carub.0008s1616 Capsella rubella HOM05D004805 ORTHO05D005756 9.3e-72 275.8 238 55.9
FvH4_3g11630 Fragaria vesca HOM05D004805 ORTHO05D005756 9.3e-72 275.8 238 56.3
Lsat_1_v5_gn_9_89740 Lactuca sativa HOM05D004805 ORTHO05D005756 9.3e-72 275.8 247 56.3
Psat2g007280 Pisum sativum HOM05D004805 ORTHO05D005756 9.3e-72 275.8 245 54.3
Atru.chr13.2016 Acer truncatum HOM05D004805 ORTHO05D005756 1.2e-71 275.4 238 56.7
Haze_09828 Corylus avellana HOM05D004805 ORTHO05D005756 1.2e-71 275.4 243 56.4
FAN25G0449 Fragaria x ananassa HOM05D004805 ORTHO05D005756 1.2e-71 275.4 255 54.9
GSVIVG01014691001 Vitis vinifera HOM05D004805 ORTHO05D005756 1.6e-71 275.0 243 56.4
BcaC01g06393 Brassica carinata HOM05D004805 ORTHO05D005756 2.1e-71 274.6 238 56.7
Eucgr.F03688 Eucalyptus grandis HOM05D004805 ORTHO05D005756 2.1e-71 274.6 238 57.1
LjContig00081g0004731 Lotus japonicus HOM05D004805 ORTHO05D005756 3.5e-71 273.9 243 56.4
Atru.chr9.1539 Acer truncatum HOM05D004805 ORTHO05D005756 4.6e-71 273.5 238 55.9
AagrBONN_evm.TU.Sc2ySwM_344.1047 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.6e-71 273.5 219 58.4
AL8G31370 Arabidopsis lyrata HOM05D004805 ORTHO05D005756 4.6e-71 273.5 238 56.3
CsaV3_3G004240 Cucumis sativus L. HOM05D004805 ORTHO05D005756 4.6e-71 273.5 243 56.0
Sopen07g033800 Solanum pennellii HOM05D004805 ORTHO05D005756 4.6e-71 273.5 242 56.6
Sp6g17690 Schrenkiella parvula HOM05D004805 ORTHO05D005756 6.0e-71 273.1 240 55.8
Medtr5g095960 Medicago truncatula HOM05D004805 ORTHO05D005756 7.9e-71 272.7 243 54.3
Prupe.3G149500 Prunus persica HOM05D004805 ORTHO05D005756 7.9e-71 272.7 238 57.1
RcHm_v2.0_Chr5g0018651 Rosa chinensis HOM05D004805 ORTHO05D005756 7.9e-71 272.7 238 56.3
Ciclev10009329m.g Citrus clementina HOM05D004805 ORTHO05D005756 1.0e-70 272.3 238 56.7
Zm00001eb191530 Zea mays HOM05D004805 ORTHO05D005756 1.3e-70 271.9 237 59.1
MD05G1261800 Malus domestica HOM05D004805 ORTHO05D005756 1.8e-70 271.6 238 56.7
Actinidia05003 Actinidia chinensis HOM05D004805 ORTHO05D005756 2.3e-70 271.2 243 56.4
Actinidia30402 Actinidia chinensis HOM05D004805 ORTHO05D005756 3.0e-70 270.8 243 56.0
Ca_06397_v3 Cicer arietinum L. HOM05D004805 ORTHO05D005756 3.0e-70 270.8 243 56.0
PSO063G7513 Papaver somniferum HOM05D004805 ORTHO05D005756 3.0e-70 270.8 238 54.6
Solyc07g065590.4 Solanum lycopersicum HOM05D004805 ORTHO05D005756 3.0e-70 270.8 243 56.4
PGSC0003DMG400022170 Solanum tuberosum HOM05D004805 ORTHO05D005756 5.1e-70 270.0 218 59.6
arahy.Tifrunner.gnm1.ann1.KL44N8 Arachis hypogaea HOM05D004805 ORTHO05D005756 6.7e-70 269.6 242 55.8
CSS0002120 Camellia sinensis var. sinensis HOM05D004805 ORTHO05D005756 6.7e-70 269.6 243 55.6
Gorai.004G033700 Gossypium raimondii HOM05D004805 ORTHO05D005756 6.7e-70 269.6 243 57.2
Rhsim06G0229900 Rhododendron simsii HOM05D004805 ORTHO05D005756 6.7e-70 269.6 244 55.3
arahy.Tifrunner.gnm1.ann1.1A96RS Arachis hypogaea HOM05D004805 ORTHO05D005756 1.1e-69 268.9 241 56.0
Lj1C890G11 Lonicera japonica HOM05D004805 ORTHO05D005756 1.1e-69 268.9 243 56.4
HPP92_025829 Vanilla planifolia HOM05D004805 ORTHO05D005756 1.1e-69 268.9 243 54.7
Carub.0005s0950 Capsella rubella HOM05D004805 ORTHO05D005756 1.5e-69 268.5 237 55.7
Dinv10336 Davidia involucrata HOM05D004805 ORTHO05D005756 1.9e-69 268.1 243 53.9
ATR0090G032 Amborella trichopoda HOM05D004805 ORTHO05D005756 3.3e-69 267.3 218 60.1
Carub.0005s0937 Capsella rubella HOM05D004805 ORTHO05D005756 5.7e-69 266.5 237 55.3
AT5G55810 Arabidopsis thaliana HOM05D004805 ORTHO05D005756 7.4e-69 266.2 238 53.8
CBR_g34363 Chara braunii HOM05D000019 ORTHO05D000002 9.7e-69 265.8 213 59.2
HanXRQChr03g0074031 Helianthus annuus HOM05D004805 ORTHO05D005756 9.7e-69 265.8 234 55.6
Lj1g0004670 Lotus japonicus HOM05D004805 ORTHO05D005756 9.7e-69 265.8 243 53.9
BcaB08g35939 Brassica carinata HOM05D004805 ORTHO05D005756 1.6e-68 265.0 240 55.4
SGA_v2.0_scaffold44G16806 Striga asiatica HOM05D001081 ORTHO05D003320 3.7e-68 263.8 242 54.5
Cc00_g18290 Coffea canephora HOM05D004805 ORTHO05D005756 6.3e-68 263.1 239 55.6
ECA234G3028 Erigeron canadensis HOM05D004805 ORTHO05D005756 4.1e-67 260.4 244 53.3
Manes.03G141600 Manihot esculenta HOM05D004805 ORTHO05D005756 2.2e-65 254.6 238 52.9
MSTRG.27026 Avicennia marina HOM05D004805 ORTHO05D005756 2.9e-65 254.2 254 52.8
Sabra05G0034900 Salix brachista HOM05D004805 ORTHO05D005756 3.8e-65 253.8 253 51.0
MELO3C014119.2 Cucumis melo HOM05D004805 ORTHO05D005756 1.1e-64 252.3 280 49.3
Potri.005G032300 Populus trichocarpa HOM05D004805 ORTHO05D005756 1.1e-64 252.3 238 51.3
EL10Ac1g00341 Beta vulgaris HOM05D004805 ORTHO05D005756 1.9e-64 251.5 245 52.2
Potri.013G021900 Populus trichocarpa HOM05D004805 ORTHO05D005756 9.4e-64 249.2 238 50.0
Duzib213G0036 Durio zibethinus HOM05D004805 ORTHO05D005756 2.7e-63 247.7 238 54.2
SalBow4G0417 Salvia bowleyana HOM05D004805 ORTHO05D005756 6.1e-63 246.5 270 49.6
A03p13810 Brassica napus HOM05D004805 ORTHO05D005756 7.9e-63 246.1 213 57.3
AagrBONN_evm.TU.Sc2ySwM_344.1044 Anthoceros agrestis HOM05D004805 ORTHO05D005756 1.0e-62 245.7 204 61.8
A10p13030 Brassica napus HOM05D004805 ORTHO05D005756 1.1e-61 242.3 212 56.6
Gohir.A08G025200 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.1e-61 242.3 238 54.2
SMO364G0361 Selaginella moellendorffii HOM05D004805 ORTHO05D005756 1.1e-61 242.3 217 53.5
Gohir.D08G035700 Gossypium hirsutum HOM05D004805 ORTHO05D005756 1.5e-61 241.9 243 53.5
C03p16250 Brassica napus HOM05D004805 ORTHO05D005756 3.3e-61 240.7 211 55.9
C09p46750 Brassica napus HOM05D004805 ORTHO05D005756 3.3e-61 240.7 212 55.7
BolC9t57526H Brassica oleracea HOM05D004805 ORTHO05D005756 3.3e-61 240.7 212 55.7
BraA10t43397Z Brassica rapa HOM05D004805 ORTHO05D005756 5.7e-61 240.0 212 55.7
TWI38G2348 Tripterygium wilfordii HOM05D004805 ORTHO05D005756 6.3e-60 236.5 199 56.8
AUR62022629 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.1e-59 235.7 237 51.1
MD10G1240100 Malus domestica HOM05D004805 ORTHO05D005756 6.9e-59 233.0 199 56.8
VMungo0647G2576 Vigna mungo HOM05D004805 ORTHO05D005756 1.2e-58 232.3 193 59.1
AagrBONN_evm.TU.Sc2ySwM_344.1045 Anthoceros agrestis HOM05D004805 ORTHO05D005756 4.5e-58 230.3 196 57.7
QL08p004083 Quercus lobata HOM05D004805 ORTHO05D005756 1.0e-57 229.2 200 56.5
Nitab4.5_0002736g0040 Nicotiana tabacum HOM05D004805 ORTHO05D005756 6.5e-57 226.5 192 56.8
Hma1.2p1_1402F.1_g281100 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 4.2e-56 223.8 216 51.9
Sc16g0008090 Simmondsia chinensis HOM05D004805 ORTHO05D005756 5.5e-56 223.4 243 49.0
Hund27237 Selenicereus undatus HOM05D004805 ORTHO05D005756 4.7e-55 220.3 269 45.4
Medtr3g007850 Medicago truncatula HOM05D004805 ORTHO05D005756 1.4e-54 218.8 196 53.6
Nitab4.5_0007415g0050 Nicotiana tabacum HOM05D004805 ORTHO05D005756 2.3e-54 218.0 193 56.0
vmacro11591 Vaccinium macrocarpon HOM05D004805 ORTHO05D005756 5.7e-53 213.4 255 46.7
Lsat_1_v5_gn_4_137701 Lactuca sativa HOM05D004805 ORTHO05D005756 7.4e-53 213.0 191 54.5
Thecc.07G013300 Theobroma cacao HOM05D004805 ORTHO05D005756 1.4e-51 208.8 175 58.3
CAN.G849.12 Capsicum annuum HOM05D004805 ORTHO05D005756 2.4e-51 208.0 184 55.4
SGA_v2.0_scaffold192G40544 Striga asiatica HOM05D001081 ORTHO05D003320 1.3e-49 202.2 232 47.8
AUR62004423 Chenopodium quinoa HOM05D004805 ORTHO05D005756 1.1e-48 199.1 164 57.9
Prupe.4G103800 Prunus persica HOM05D004805 ORTHO05D005756 1.5e-48 198.7 238 46.2
SEGI_06932 Sequoiadendron giganteum HOM05D004805 ORTHO05D018109 8.0e-47 193.0 193 51.8
FAN21G3052 Fragaria x ananassa HOM05D004805 ORTHO05D005756 3.9e-46 190.7 210 51.4
Ah.05g180060 Amaranthus hybridus HOM05D004805 ORTHO05D005756 2.6e-45 188.0 174 55.2
Migut.F01027 Erythranthe guttata HOM05D004805 ORTHO05D005756 1.3e-44 185.7 242 46.3
PRCOL_00003123 Prasinoderma coloniale HOM05D004805 ORTHO05D005756 4.8e-44 183.7 224 45.5
CARHR269180 Cardamine hirsuta HOM05D004805 ORTHO05D005756 3.1e-43 181.0 164 52.4
TAR624G1110 Trochodendron aralioides HOM05D004805 ORTHO05D005756 7.0e-43 179.9 197 48.7
BraA03t10684Z Brassica rapa HOM05D004805 ORTHO05D005756 2.9e-41 174.5 229 45.4
Os02g0814900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 1.1e-40 172.6 191 48.7
Lj3g0007860 Lotus japonicus HOM05D004805 ORTHO05D005756 1.9e-40 171.8 241 45.2
COL.COLO4_09836 Corchorus olitorius HOM05D004805 ORTHO05D005756 4.4e-37 160.6 126 65.1
Glyma.19G097900 Glycine max HOM05D004805 ORTHO05D005756 4.4e-37 160.6 142 54.9
BolC3t14047H Brassica oleracea HOM05D004805 ORTHO05D005756 2.2e-36 158.3 237 40.1
DCAR_000844 Daucus carota HOM05D004805 ORTHO05D007187 6.3e-36 156.8 172 47.1
Hma1.2p1_1516F.1_g288260 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 2.4e-35 154.8 193 44.0
Rhsim04G0012600 Rhododendron simsii HOM05D004805 ORTHO05D005756 2.7e-34 151.4 166 48.8
Thhalv10015421m.g Eutrema salsugineum HOM05D004805 ORTHO05D005756 1.9e-32 145.2 192 42.7
Os09g0347900 Oryza sativa ssp. japonica HOM05D004805 ORTHO05D005756 4.1e-27 127.5 106 55.7
Cpa.g.sc26.30 Carica papaya HOM05D004805 ORTHO05D005756 5.4e-27 127.1 106 55.7
PSO170G0902 Papaver somniferum HOM05D004805 ORTHO05D005756 5.9e-26 123.6 100 59.0
SEGI_22417 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 7.7e-26 123.2 97 61.9
ECA240G4670 Erigeron canadensis HOM05D004805 ORTHO05D005756 9.5e-24 116.3 103 55.3
Cfa025186 Carpinus fangiana HOM05D004805 ORTHO05D005756 1.2e-23 115.9 161 37.9
unitig_0.g252 Utricularia gibba HOM05D004805 ORTHO05D005756 3.6e-23 114.4 103 53.4
Glyma.02G300600 Glycine max HOM05D004805 ORTHO05D005756 2.2e-20 105.1 103 53.4
CBR_g34381 Chara braunii HOM05D000019 ORTHO05D000048 2.0e-18 98.6 81 58.0
Cre14.g626950 Chlamydomonas reinhardtii HOM05D004805 ORTHO05D005756 1.6e-15 89.0 373 24.4
QL08p004070 Quercus lobata HOM05D000031 ORTHO05D005756 8.0e-15 86.7 184 35.9
SEGI_01519 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.0e-14 84.3 72 56.9
Hma1.2p1_0226F.1_g095340 Hydrangea macrophylla HOM05D004805 ORTHO05D005756 8.9e-14 83.2 156 35.3
SEGI_37983 Sequoiadendron giganteum HOM05D004805 ORTHO05D005756 4.9e-12 77.4 82 48.8
ECA234G1395 Erigeron canadensis HOM05D004805 ORTHO05D005756 3.9e-09 67.8 66 54.5
Oeu037059.1 Olea europaea HOM05D004805 ORTHO05D005756 6.6e-09 67.0 65 53.8
FAN24G2452 Fragaria x ananassa HOM05D004805 ORTHO05D005756 4.3e-08 64.3 45 62.2
PSO170G5679 Papaver somniferum HOM05D006943 ORTHO05D008565 1.6e-07 62.4 81 37.0
SMO141G0264 Selaginella moellendorffii HOM05D010558 ORTHO05D018109 1.6e-07 62.4 128 25.8
CBR_g41720 Chara braunii HOM05D000601 ORTHO05D000407 2.1e-07 62.0 164 28.0
PSO063G4511 Papaver somniferum HOM05D006943 ORTHO05D008565 2.1e-07 62.0 81 37.0
CBR_g38396 Chara braunii HOM05D002537 ORTHO05D002751 1.4e-06 59.3 130 28.5
AagrBONN_evm.TU.Sc2ySwM_362.820 Anthoceros agrestis HOM05D002537 ORTHO05D004294 1.8e-06 58.9 126 25.4
THA.LOC104825083 Tarenaya hassleriana HOM05D005963 ORTHO05D006869 1.8e-06 58.9 138 27.5
MBI07_g41899_MAGBIO Magnolia biondii HOM05D002537 ORTHO05D002751 2.3e-06 58.5 210 26.2
Mapoly0043s0010 Marchantia polymorpha HOM05D002537 ORTHO05D002751 3.1e-06 58.2 112 28.6
MD16G1130200 Malus domestica HOM05D002537 ORTHO05D002751 4.0e-06 57.8 125 28.0
SMO180G0014 Selaginella moellendorffii HOM05D010558 ORTHO05D018109 4.0e-06 57.8 128 25.8
CBR_g40490 Chara braunii HOM05D000601 ORTHO05D000407 5.2e-06 57.4 142 25.4
Mapoly0056s0059 Marchantia polymorpha HOM05D002537 ORTHO05D002751 8.9e-06 56.6 169 25.4
SHI13839 Sapria himalayana HOM05D005963 ORTHO05D006869 8.9e-06 56.6 116 29.3
Thecc.03G166100 Theobroma cacao HOM05D005963 ORTHO05D006869 8.9e-06 56.6 117 29.1
GSVIVG01018456001 Vitis vinifera HOM05D005963 ORTHO05D006869 8.9e-06 56.6 133 28.6


User provided reference genes

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