Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0209 Marchantia polymorpha HOM05D004738 ORTHO05D006439 2.4e-248 861.7 419 100.0
AagrBONN_evm.TU.Sc2ySwM_368.190 Anthoceros agrestis HOM05D004738 ORTHO05D006439 5.8e-122 441.8 379 57.0
Pp3c18_16070 Physcomitrium patens HOM05D004738 ORTHO05D006439 7.6e-122 441.4 336 62.5
Solyc03g120430.3 Solanum lycopersicum HOM05D004738 ORTHO05D006439 6.2e-116 421.8 370 53.8
Sopen00g008920 Solanum pennellii HOM05D004738 ORTHO05D006439 6.2e-116 421.8 370 53.8
Sopen03g039310 Solanum pennellii HOM05D004738 ORTHO05D006439 6.2e-116 421.8 370 53.8
COL.COLO4_02957 Corchorus olitorius HOM05D004738 ORTHO05D006439 9.0e-115 417.9 346 56.9
Nitab4.5_0005784g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 1.2e-114 417.5 371 53.6
PGSC0003DMG400002559 Solanum tuberosum HOM05D004738 ORTHO05D006439 1.2e-114 417.5 370 53.5
SGA_v2.0_scaffold37G14802 Striga asiatica HOM05D004738 ORTHO05D006439 1.5e-114 417.2 331 58.0
BcaC08g45309 Brassica carinata HOM05D004738 ORTHO05D006439 2.0e-114 416.8 331 56.5
C06p29130 Brassica napus HOM05D004738 ORTHO05D006439 2.0e-114 416.8 331 56.5
BolC6t38077H Brassica oleracea HOM05D004738 ORTHO05D006439 2.0e-114 416.8 331 56.5
A07p26650 Brassica napus HOM05D004738 ORTHO05D006439 2.6e-114 416.4 331 56.8
BraA07t30308Z Brassica rapa HOM05D004738 ORTHO05D006439 2.6e-114 416.4 331 56.8
Cc04_g03640 Coffea canephora HOM05D004738 ORTHO05D006439 4.5e-114 415.6 331 58.6
Carub.0002s2719 Capsella rubella HOM05D004738 ORTHO05D006439 5.8e-114 415.2 331 57.4
Zm00001eb156570 Zea mays HOM05D004738 ORTHO05D006439 5.8e-114 415.2 330 57.9
Aa31LG4G650 Aethionema arabicum HOM05D004738 ORTHO05D006439 1.3e-113 414.1 331 57.1
BcaB02g07276 Brassica carinata HOM05D004738 ORTHO05D006439 1.3e-113 414.1 347 54.2
Aqoxy7G03780 Aquilegia oxysepala HOM05D004738 ORTHO05D006439 1.7e-113 413.7 350 55.4
ECA247G3808 Erigeron canadensis HOM05D004738 ORTHO05D006439 2.9e-113 412.9 331 58.6
Os01g0682500 Oryza sativa ssp. japonica HOM05D004738 ORTHO05D006439 2.9e-113 412.9 331 58.3
Prupe.3G075100 Prunus persica HOM05D004738 ORTHO05D006439 4.9e-113 412.1 331 57.7
CsaV3_7G032950 Cucumis sativus L. HOM05D004738 ORTHO05D006439 6.5e-113 411.8 331 58.0
Peaxi162Scf00015g00234 Petunia axillaris HOM05D004738 ORTHO05D006439 6.5e-113 411.8 331 57.7
Ah.01g021090 Amaranthus hybridus HOM05D004738 ORTHO05D006439 1.1e-112 411.0 331 57.1
Nn8g39296 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.1e-112 411.0 331 57.7
AL2G41120 Arabidopsis lyrata HOM05D004738 ORTHO05D006439 1.4e-112 410.6 331 56.2
MELO3C023371.2 Cucumis melo HOM05D004738 ORTHO05D006439 1.4e-112 410.6 333 58.6
Glyma.15G012500 Glycine max HOM05D004738 ORTHO05D006439 1.4e-112 410.6 331 58.0
Phvul.005G173200 Phaseolus vulgaris HOM05D004738 ORTHO05D006439 1.4e-112 410.6 331 58.0
CiPaw.02G152800 Carya illinoinensis HOM05D004738 ORTHO05D006439 1.9e-112 410.2 331 57.7
VMungo1080G0347 Vigna mungo HOM05D004738 ORTHO05D006439 1.9e-112 410.2 331 58.6
HanXRQChr02g0032631 Helianthus annuus HOM05D004738 ORTHO05D006439 2.5e-112 409.8 331 57.7
BcaC08g47585 Brassica carinata HOM05D004738 ORTHO05D006439 3.2e-112 409.5 347 54.2
C06p54140 Brassica napus HOM05D004738 ORTHO05D006439 3.2e-112 409.5 347 54.2
Sp5g35430 Schrenkiella parvula HOM05D004738 ORTHO05D006439 4.2e-112 409.1 347 54.2
DCAR_026302 Daucus carota HOM05D004738 ORTHO05D006439 5.5e-112 408.7 331 56.5
Nitab4.5_0002424g0040 Nicotiana tabacum HOM05D004738 ORTHO05D006439 5.5e-112 408.7 375 52.8
Ca_01103_v3 Cicer arietinum L. HOM05D004738 ORTHO05D006439 9.3e-112 407.9 331 56.2
Glyma.13G361400 Glycine max HOM05D004738 ORTHO05D006439 9.3e-112 407.9 331 57.7
Thhalv10018540m.g Eutrema salsugineum HOM05D004738 ORTHO05D006439 1.2e-111 407.5 347 54.5
CARHR074130 Cardamine hirsuta HOM05D004738 ORTHO05D006439 1.6e-111 407.1 331 56.5
Lalb_Chr14g0373571 Lupinus albus HOM05D004738 ORTHO05D006439 2.1e-111 406.8 331 57.1
Lalb_Chr22g0351141 Lupinus albus HOM05D004738 ORTHO05D006439 2.1e-111 406.8 331 57.4
MBI01_g13569_MAGBIO Magnolia biondii HOM05D004738 ORTHO05D006439 2.1e-111 406.8 331 57.1
Gohir.A02G122900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 2.7e-111 406.4 331 56.8
BraA07t32032Z Brassica rapa HOM05D004738 ORTHO05D006439 3.5e-111 406.0 347 53.9
Medtr2g102510 Medicago truncatula HOM05D004738 ORTHO05D006439 3.5e-111 406.0 331 55.9
Nn2g11846 Nelumbo nucifera HOM05D004738 ORTHO05D006439 3.5e-111 406.0 419 50.1
THA.LOC104808210 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 3.5e-111 406.0 347 55.0
Cpa.g.sc10.174 Carica papaya HOM05D004738 ORTHO05D006439 4.6e-111 405.6 331 56.2
Lj9A505T66 Lonicera japonica HOM05D004738 ORTHO05D006439 4.6e-111 405.6 331 57.4
Manes.04G120700 Manihot esculenta HOM05D004738 ORTHO05D006439 6.0e-111 405.2 331 56.5
vmacro16939 Vaccinium macrocarpon HOM05D004738 ORTHO05D006439 6.0e-111 405.2 331 57.1
CAN.G438.45 Capsicum annuum HOM05D004738 ORTHO05D006439 7.9e-111 404.8 368 53.5
HanXRQChr04g0096441 Helianthus annuus HOM05D004738 ORTHO05D006439 7.9e-111 404.8 331 57.1
A07p45280 Brassica napus HOM05D004738 ORTHO05D006439 1.0e-110 404.4 347 53.9
Thecc.06G081700 Theobroma cacao HOM05D004738 ORTHO05D006439 1.3e-110 404.1 331 56.5
QL05p025470 Quercus lobata HOM05D004738 ORTHO05D006439 1.8e-110 403.7 331 56.8
C02p37360 Brassica napus HOM05D004738 ORTHO05D006439 2.3e-110 403.3 331 55.3
BolC2t09746H Brassica oleracea HOM05D004738 ORTHO05D006439 3.9e-110 402.5 331 55.6
Gohir.D03G073500 Gossypium hirsutum HOM05D004738 ORTHO05D006439 3.9e-110 402.5 331 56.5
MD17G1198400 Malus domestica HOM05D004738 ORTHO05D006439 3.9e-110 402.5 331 56.5
arahy.Tifrunner.gnm1.ann1.2F1L5Z Arachis hypogaea HOM05D004738 ORTHO05D006439 5.1e-110 402.1 331 58.0
TWI12G0818 Tripterygium wilfordii HOM05D004738 ORTHO05D006439 6.7e-110 401.7 351 54.1
A02p23600 Brassica napus HOM05D004738 ORTHO05D006439 8.7e-110 401.4 331 55.0
Dinv30535 Davidia involucrata HOM05D004738 ORTHO05D006439 8.7e-110 401.4 331 57.4
Migut.I00837 Erythranthe guttata HOM05D004738 ORTHO05D006439 8.7e-110 401.4 331 56.8
Gorai.002G058000 Gossypium raimondii HOM05D004738 ORTHO05D006439 8.7e-110 401.4 331 56.2
Sabra03G0032700 Salix brachista HOM05D004738 ORTHO05D006439 8.7e-110 401.4 331 56.5
BraA02t07352Z Brassica rapa HOM05D004738 ORTHO05D006439 1.1e-109 401.0 331 55.0
CANSAT56G4214 Cannabis sativa HOM05D004738 ORTHO05D006439 1.1e-109 401.0 366 52.2
Gorai.009G132100 Gossypium raimondii HOM05D004738 ORTHO05D006439 1.1e-109 401.0 369 53.4
Rhsim12G0195800 Rhododendron simsii HOM05D004738 ORTHO05D006439 1.1e-109 401.0 331 56.5
Sc12g0009100 Simmondsia chinensis HOM05D004738 ORTHO05D006439 1.1e-109 401.0 330 56.7
Zm00001eb267390 Zea mays HOM05D004738 ORTHO05D006439 1.1e-109 401.0 331 56.2
GSVIVG01017163001 Vitis vinifera HOM05D004738 ORTHO05D006439 1.5e-109 400.6 330 57.0
Duzib235G1168 Durio zibethinus HOM05D004738 ORTHO05D006439 1.9e-109 400.2 341 56.0
SMO147G0425 Selaginella moellendorffii HOM05D004738 ORTHO05D006439 1.9e-109 400.2 337 56.1
TAR383G0518 Trochodendron aralioides HOM05D004738 ORTHO05D006439 1.9e-109 400.2 331 55.3
MSTRG.11096 Avicennia marina HOM05D004738 ORTHO05D006439 3.3e-109 399.4 331 57.1
BcaB05g25272 Brassica carinata HOM05D004738 ORTHO05D006439 3.3e-109 399.4 331 54.4
Sed0002572 Sechium edule HOM05D004738 ORTHO05D006439 3.3e-109 399.4 331 56.8
Hund06597 Selenicereus undatus HOM05D004738 ORTHO05D006439 3.3e-109 399.4 332 56.3
Ciclev10025569m.g Citrus clementina HOM05D004738 ORTHO05D006439 4.3e-109 399.1 331 55.6
Gohir.A05G127000 Gossypium hirsutum HOM05D004738 ORTHO05D006439 4.3e-109 399.1 354 54.5
Lj3g0001201 Lotus japonicus HOM05D004738 ORTHO05D006439 5.7e-109 398.7 331 56.2
Potri.003G058500 Populus trichocarpa HOM05D004738 ORTHO05D006439 5.7e-109 398.7 331 56.2
THA.LOC104812476 Tarenaya hassleriana HOM05D004738 ORTHO05D006439 7.4e-109 398.3 331 55.9
BcaB02g08689 Brassica carinata HOM05D004738 ORTHO05D006439 9.7e-109 397.9 351 52.4
FvH4_6g30840 Fragaria vesca HOM05D004738 ORTHO05D006439 9.7e-109 397.9 331 55.9
AUR62011604 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.3e-108 397.5 331 55.6
Eucgr.F02574 Eucalyptus grandis HOM05D004738 ORTHO05D006439 1.3e-108 397.5 331 55.3
FAN05G5687 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.6e-108 397.1 331 55.6
RcHm_v2.0_Chr2g0137281 Rosa chinensis HOM05D004738 ORTHO05D006439 1.6e-108 397.1 331 55.9
Lj3g0008822 Lotus japonicus HOM05D004738 ORTHO05D006439 2.8e-108 396.4 331 55.9
Oeu022417.1 Olea europaea HOM05D004738 ORTHO05D006439 3.7e-108 396.0 330 57.0
TPR.G37250 Trifolium pratense HOM05D004738 ORTHO05D006439 3.7e-108 396.0 331 55.0
Actinidia08828 Actinidia chinensis HOM05D004738 ORTHO05D006439 6.3e-108 395.2 331 56.8
BolC6t40426H Brassica oleracea HOM05D004738 ORTHO05D006439 1.4e-107 394.0 378 49.7
AUR62016418 Chenopodium quinoa HOM05D004738 ORTHO05D006439 1.4e-107 394.0 342 54.4
FAN02G1331 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.8e-107 393.7 331 55.0
arahy.Tifrunner.gnm1.ann1.S5ELWT Arachis hypogaea HOM05D004738 ORTHO05D006439 3.1e-107 392.9 345 55.7
Lsat_1_v5_gn_1_34140 Lactuca sativa HOM05D004738 ORTHO05D006439 3.1e-107 392.9 332 56.6
PSO210G6241 Papaver somniferum HOM05D004738 ORTHO05D006439 4.1e-107 392.5 338 53.3
EL10Ac9g21974 Beta vulgaris HOM05D004738 ORTHO05D006439 6.9e-107 391.7 320 56.6
PSO210G3793 Papaver somniferum HOM05D004738 ORTHO05D006439 6.9e-107 391.7 338 53.0
ClCG09G002360 Citrullus lanatus HOM05D004738 ORTHO05D006439 2.0e-106 390.2 364 52.5
CSS0005409 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 3.4e-106 389.4 331 55.9
Cfa002046 Carpinus fangiana HOM05D004738 ORTHO05D006439 7.6e-106 388.3 331 55.6
FAN09G3531 Fragaria x ananassa HOM05D004738 ORTHO05D006439 1.0e-105 387.9 333 54.7
PGR102G2550 Punica granatum HOM05D004738 ORTHO05D006439 1.7e-105 387.1 330 53.6
CBR_g49861 Chara braunii HOM05D004738 ORTHO05D006439 5.0e-105 385.6 371 50.1
Haze_16464 Corylus avellana HOM05D004738 ORTHO05D006439 5.0e-105 385.6 355 52.4
FAN14G4632 Fragaria x ananassa HOM05D004738 ORTHO05D006439 5.0e-105 385.6 343 53.6
SEGI_20298 Sequoiadendron giganteum HOM05D004738 ORTHO05D006439 1.1e-104 384.4 335 54.6
ATR0083G024 Amborella trichopoda HOM05D004738 ORTHO05D006439 1.9e-104 383.6 332 54.5
CDE06G1313 Ceratophyllum demersum HOM05D004738 ORTHO05D006439 1.6e-103 380.6 331 53.8
Potri.001G177300 Populus trichocarpa HOM05D004738 ORTHO05D006439 1.6e-103 380.6 380 48.7
Gohir.D05G127900 Gossypium hirsutum HOM05D004738 ORTHO05D006439 1.3e-102 377.5 317 55.8
CSS0037007 Camellia sinensis var. sinensis HOM05D004738 ORTHO05D006439 3.8e-97 359.4 331 52.6
SHI09688 Sapria himalayana HOM05D004738 ORTHO05D006439 1.0e-94 351.3 353 48.7
Nn2g11397 Nelumbo nucifera HOM05D004738 ORTHO05D006439 4.4e-93 345.9 352 49.7
Cre12.g542300 Chlamydomonas reinhardtii HOM05D004738 ORTHO05D006439 7.4e-93 345.1 331 51.1
Duzib192G0909 Durio zibethinus HOM05D004738 ORTHO05D006439 3.1e-91 339.7 289 55.0
unitig_21.g20511 Utricularia gibba HOM05D004738 ORTHO05D006439 4.1e-91 339.3 331 52.6
HPP92_011481 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.1e-88 331.3 332 50.3
AT1G80380 Arabidopsis thaliana HOM05D004738 ORTHO05D006439 2.1e-87 327.0 270 54.8
BcaC03g15976 Brassica carinata HOM05D004738 ORTHO05D006439 2.6e-85 320.1 243 60.5
Oeu033460.1 Olea europaea HOM05D004738 ORTHO05D006439 1.0e-81 308.1 289 52.9
MCO11G539 Micromonas commoda HOM05D004738 ORTHO05D006439 2.1e-79 300.4 331 45.9
HPP92_011544 Vanilla planifolia HOM05D004738 ORTHO05D006439 1.4e-78 297.7 300 50.0
Psat5g299520 Pisum sativum HOM05D004738 ORTHO05D006439 2.2e-73 280.4 234 54.7
PRCOL_00005044 Prasinoderma coloniale HOM05D004738 ORTHO05D006439 1.2e-69 268.1 327 45.0
arahy.Tifrunner.gnm1.ann1.7R7SHJ Arachis hypogaea HOM05D004738 ORTHO05D006439 6.4e-52 209.1 239 45.6
arahy.Tifrunner.gnm1.ann1.1FY4ZR Arachis hypogaea HOM05D004738 ORTHO05D007023 1.6e-47 194.5 229 46.3
Dinv38066 Davidia involucrata HOM05D004738 ORTHO05D006439 2.1e-47 194.1 146 63.7
Hund00584 Selenicereus undatus HOM05D004738 ORTHO05D006439 5.6e-40 169.5 126 57.9
arahy.Tifrunner.gnm1.ann1.CI84PE Arachis hypogaea HOM05D004738 ORTHO05D006439 6.4e-28 129.4 154 44.2
TAR636G0147 Trochodendron aralioides HOM05D004738 ORTHO05D051490 1.2e-26 125.2 161 35.4
TAR636G3653 Trochodendron aralioides HOM05D004738 ORTHO05D051490 6.0e-26 122.9 161 34.8
Dinv38065 Davidia involucrata HOM05D004738 ORTHO05D006439 5.6e-24 116.3 79 65.8
Nn4g26563 Nelumbo nucifera HOM05D004738 ORTHO05D006439 1.4e-22 111.7 117 49.6
arahy.Tifrunner.gnm1.ann1.9N81UM Arachis hypogaea HOM05D005815 ORTHO05D007023 1.8e-22 111.3 82 65.9
Ah.09g223940 Amaranthus hybridus HOM05D004738 ORTHO05D001643 1.9e-19 101.3 92 56.5
arahy.Tifrunner.gnm1.ann1.GN5QKJ Arachis hypogaea HOM05D005815 ORTHO05D007023 4.8e-15 86.7 60 63.3
Sabra01G0149000 Salix brachista HOM05D004738 ORTHO05D006439 6.2e-15 86.3 90 42.2
Nn1g05393 Nelumbo nucifera HOM05D004738 ORTHO05D280673 1.6e-07 61.6 82 37.8
Pp3c21_6430 Physcomitrium patens HOM05D004738 ORTHO05D314778 1.8e-06 58.2 57 45.6


User provided reference genes

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