Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0205 Marchantia polymorpha HOM05D004112 ORTHO05D004739 0.0e+00 1487.2 775 100.0
Pp3c16_2520 Physcomitrium patens HOM05D004112 ORTHO05D004739 3.3e-54 217.6 716 30.7
TAR622G0947 Trochodendron aralioides HOM05D004112 ORTHO05D004739 1.3e-45 189.1 701 29.5
Nn3g16670 Nelumbo nucifera HOM05D004112 ORTHO05D004739 3.8e-42 177.6 782 27.2
Migut.K00616 Erythranthe guttata HOM05D004112 ORTHO05D004739 1.9e-41 175.3 713 28.8
Gohir.A01G158700 Gossypium hirsutum HOM05D004112 ORTHO05D004739 3.2e-41 174.5 701 27.7
PSO478G3171 Papaver somniferum HOM05D004112 ORTHO05D004739 4.2e-41 174.1 710 28.0
TWI36G0458 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 3.5e-40 171.0 748 27.8
Gohir.D01G152000 Gossypium hirsutum HOM05D004112 ORTHO05D004739 6.1e-40 170.2 709 27.6
GSVIVG01000557001 Vitis vinifera HOM05D004112 ORTHO05D004739 3.9e-39 167.5 728 26.0
ClCG05G025880 Citrullus lanatus HOM05D004112 ORTHO05D004739 5.7e-38 163.7 720 28.1
Sed0023093 Sechium edule HOM05D004112 ORTHO05D004739 5.7e-38 163.7 742 26.3
CsaV3_5G030980 Cucumis sativus L. HOM05D004112 ORTHO05D004739 7.4e-38 163.3 720 28.6
Ciclev10030867m.g Citrus clementina HOM05D004112 ORTHO05D004739 2.8e-37 161.4 728 27.9
Lj6g0012261 Lotus japonicus HOM05D004112 ORTHO05D004739 1.1e-36 159.5 776 26.9
MELO3C011937.2 Cucumis melo HOM05D004112 ORTHO05D004739 1.4e-36 159.1 721 27.9
Thecc.02G263400 Theobroma cacao HOM05D004112 ORTHO05D004739 1.8e-36 158.7 781 27.3
Lalb_Chr08g0230891 Lupinus albus HOM05D004112 ORTHO05D004739 2.4e-36 158.3 701 26.0
THA.LOC104805277 Tarenaya hassleriana HOM05D004112 ORTHO05D004739 4.1e-36 157.5 733 25.0
Eucgr.H02474 Eucalyptus grandis HOM05D004112 ORTHO05D004739 6.9e-36 156.8 773 24.5
Phvul.001G255700 Phaseolus vulgaris HOM05D004112 ORTHO05D004739 1.2e-35 156.0 802 26.7
Duzib268G0184 Durio zibethinus HOM05D004112 ORTHO05D004739 2.0e-35 155.2 704 28.6
FAN17G0775 Fragaria x ananassa HOM05D004112 ORTHO05D004739 4.5e-35 154.1 746 25.1
FAN07G2897 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.3e-34 152.5 719 26.8
CANSAT01G3092 Cannabis sativa HOM05D004112 ORTHO05D004739 1.7e-34 152.1 699 27.0
COL.COLO4_23486 Corchorus olitorius HOM05D004112 ORTHO05D004739 1.7e-34 152.1 783 25.8
Gorai.002G188300 Gossypium raimondii HOM05D004112 ORTHO05D004739 1.7e-34 152.1 711 28.3
arahy.Tifrunner.gnm1.ann1.B4WRN4 Arachis hypogaea HOM05D004112 ORTHO05D004739 2.2e-34 151.8 728 26.8
FvH4_4g25440 Fragaria vesca HOM05D004112 ORTHO05D004739 2.2e-34 151.8 752 25.8
MD13G1102900 Malus domestica HOM05D004112 ORTHO05D004739 2.9e-34 151.4 709 26.8
ATR0122G036 Amborella trichopoda HOM05D004112 ORTHO05D004739 3.8e-34 151.0 703 26.7
MD16G1103100 Malus domestica HOM05D004112 ORTHO05D004739 3.8e-34 151.0 736 28.0
Glyma.18G013300 Glycine max HOM05D004112 ORTHO05D004739 6.5e-34 150.2 261 40.6
Prupe.1G242900 Prunus persica HOM05D004112 ORTHO05D004739 6.5e-34 150.2 718 27.3
Rhsim12G0039400 Rhododendron simsii HOM05D004112 ORTHO05D004739 8.5e-34 149.8 717 26.1
FAN12G3846 Fragaria x ananassa HOM05D004112 ORTHO05D004739 1.9e-33 148.7 758 26.0
Atru.chr11.2164 Acer truncatum HOM05D004112 ORTHO05D004739 2.5e-33 148.3 690 26.1
Sabra10G0020400 Salix brachista HOM05D004112 ORTHO05D004739 2.5e-33 148.3 753 25.2
CSS0011275 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 3.2e-33 147.9 753 27.0
ECA233G4780 Erigeron canadensis HOM05D000002 ORTHO05D000001 5.5e-33 147.1 690 26.7
Thhalv10007108m.g Eutrema salsugineum HOM05D004112 ORTHO05D004739 9.4e-33 146.4 805 25.3
SGA_v2.0_scaffold476G52145 Striga asiatica HOM05D004112 ORTHO05D004739 9.4e-33 146.4 747 25.3
Aqoxy3G01258 Aquilegia oxysepala HOM05D004112 ORTHO05D004739 1.2e-32 146.0 765 25.1
arahy.Tifrunner.gnm1.ann1.5BR3PR Arachis hypogaea HOM05D004112 ORTHO05D004739 3.6e-32 144.4 758 24.9
VMungo1383G0113 Vigna mungo HOM05D004112 ORTHO05D004739 3.6e-32 144.4 742 26.8
Cc11_g15970 Coffea canephora HOM05D004112 ORTHO05D004739 1.0e-31 142.9 799 24.5
Potri.010G048700 Populus trichocarpa HOM05D004112 ORTHO05D004739 1.4e-31 142.5 761 25.9
RcHm_v2.0_Chr4g0432751 Rosa chinensis HOM05D004112 ORTHO05D004739 1.4e-31 142.5 759 25.8
CSS0023851 Camellia sinensis var. sinensis HOM05D004112 ORTHO05D004739 1.8e-31 142.1 718 26.0
Dinv14739 Davidia involucrata HOM05D004112 ORTHO05D004739 5.1e-31 140.6 696 27.4
A06p08680 Brassica napus HOM05D000421 ORTHO05D004739 8.8e-31 139.8 804 23.6
BraA06t24065Z Brassica rapa HOM05D000421 ORTHO05D004739 8.8e-31 139.8 804 23.6
CiPaw.06G066400 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.7e-29 135.6 792 24.6
QL03p056879 Quercus lobata HOM05D004112 ORTHO05D004739 2.2e-29 135.2 747 26.4
Potri.008G185100 Populus trichocarpa HOM05D004112 ORTHO05D004739 2.8e-29 134.8 713 25.2
Actinidia01360 Actinidia chinensis HOM05D004112 ORTHO05D004739 6.3e-29 133.7 286 35.0
A09p63460 Brassica napus HOM05D004112 ORTHO05D004739 8.2e-29 133.3 717 24.5
Lalb_Chr23g0277631 Lupinus albus HOM05D004112 ORTHO05D004739 8.2e-29 133.3 707 24.8
vmacro16177 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 8.2e-29 133.3 729 26.3
Hund06041 Selenicereus undatus HOM05D004112 ORTHO05D004739 1.1e-28 132.9 819 24.4
Sp1g11580 Schrenkiella parvula HOM05D004112 ORTHO05D004739 1.4e-28 132.5 787 24.0
TWI18G0097 Tripterygium wilfordii HOM05D004112 ORTHO05D004739 1.4e-28 132.5 781 24.7
Actinidia15108 Actinidia chinensis HOM05D004112 ORTHO05D004739 1.8e-28 132.1 835 24.7
CiPaw.05G178200 Carya illinoinensis HOM05D004112 ORTHO05D004739 1.8e-28 132.1 699 26.5
Hund25400 Selenicereus undatus HOM05D004112 ORTHO05D004739 3.1e-28 131.3 714 25.2
vmacro01117 Vaccinium macrocarpon HOM05D004112 ORTHO05D004739 3.1e-28 131.3 534 30.0
Sc26g0001570 Simmondsia chinensis HOM05D004112 ORTHO05D004739 5.3e-28 130.6 689 24.4
EL10Ac6g13879 Beta vulgaris HOM05D004112 ORTHO05D004739 1.5e-27 129.0 793 24.2
Actinidia37446 Actinidia chinensis HOM05D004112 ORTHO05D004739 2.6e-27 128.3 835 24.8
BcaC05g25092 Brassica carinata HOM05D004112 ORTHO05D004739 7.7e-27 126.7 728 22.9
BolC5t29775H Brassica oleracea HOM05D000421 ORTHO05D004739 7.7e-27 126.7 728 22.9
DCAR_007043 Daucus carota HOM05D004112 ORTHO05D004739 1.0e-26 126.3 744 23.0
Psat5g091840 Pisum sativum HOM05D004112 ORTHO05D004739 1.3e-26 125.9 723 26.0
Manes.13G021500 Manihot esculenta HOM05D004112 ORTHO05D004739 1.7e-26 125.6 745 25.4
BraA09t41696Z Brassica rapa HOM05D004112 ORTHO05D004739 2.9e-26 124.8 694 24.1
BcaB08g34232 Brassica carinata HOM05D004112 ORTHO05D004739 3.8e-26 124.4 315 31.4
CARHR013360 Cardamine hirsuta HOM05D004112 ORTHO05D004739 5.0e-26 124.0 718 23.5
Ca_25135_v3 Cicer arietinum L. HOM05D004112 ORTHO05D004739 3.2e-25 121.3 437 29.7
Glyma.11G243800 Glycine max HOM05D004112 ORTHO05D004739 4.2e-25 120.9 690 25.8
PGR119G0183 Punica granatum HOM05D004112 ORTHO05D004739 4.2e-25 120.9 744 25.7
BolC8t52227H Brassica oleracea HOM05D004112 ORTHO05D004739 7.2e-25 120.2 720 23.9
Carub.0001s1278 Capsella rubella HOM05D004112 ORTHO05D004739 7.2e-25 120.2 803 24.3
AL1G24680 Arabidopsis lyrata HOM05D004112 ORTHO05D004739 9.4e-25 119.8 719 23.9
AT1G13030 Arabidopsis thaliana HOM05D004112 ORTHO05D004739 9.4e-25 119.8 356 30.9
FAN22G2105 Fragaria x ananassa HOM05D004112 ORTHO05D004739 3.6e-24 117.9 708 24.7
HPP92_024299 Vanilla planifolia HOM05D004112 ORTHO05D004739 6.1e-24 117.1 759 25.4
Os12g0288600 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 1.4e-23 115.9 471 28.2
Aa31LG1G1770 Aethionema arabicum HOM05D004112 ORTHO05D004739 3.0e-23 114.8 718 24.1
HanXRQChr12g0371721 Helianthus annuus HOM05D004112 ORTHO05D004739 3.0e-23 114.8 704 24.7
TPR.G30525 Trifolium pratense HOM05D004112 ORTHO05D004739 3.0e-23 114.8 761 23.9
unitig_22.g6943 Utricularia gibba HOM05D004112 ORTHO05D004739 3.0e-23 114.8 738 24.1
SEGI_13723 Sequoiadendron giganteum HOM05D004112 ORTHO05D004739 3.9e-23 114.4 161 46.0
Dinv15208 Davidia involucrata HOM05D004112 ORTHO05D004739 5.1e-23 114.0 816 24.4
C08p46920 Brassica napus HOM05D004112 ORTHO05D004739 8.8e-23 113.2 304 30.3
Rhsim12G0108400 Rhododendron simsii HOM05D004112 ORTHO05D004739 1.1e-22 112.8 232 33.2
Manes.12G021100 Manihot esculenta HOM05D004112 ORTHO05D004739 4.4e-22 110.9 279 33.3
C05p10290 Brassica napus HOM05D000421 ORTHO05D004739 5.7e-22 110.5 798 22.6
Cfa009235 Carpinus fangiana HOM05D004112 ORTHO05D004739 1.3e-21 109.4 280 32.1
ClCG08G017620 Citrullus lanatus HOM05D004112 ORTHO05D004739 1.3e-21 109.4 696 23.9
Lsat_1_v5_gn_8_152820 Lactuca sativa HOM05D004112 ORTHO05D004739 2.8e-21 108.2 733 25.6
AUR62024236 Chenopodium quinoa HOM05D004112 ORTHO05D004739 1.1e-20 106.3 713 24.7
HanXRQChr11g0329171 Helianthus annuus HOM05D004112 ORTHO05D004739 1.4e-20 105.9 700 25.6
CDE09G0121 Ceratophyllum demersum HOM05D004112 ORTHO05D004739 1.8e-20 105.5 416 27.6
Zm00001eb421500 Zea mays HOM05D004112 ORTHO05D004739 2.4e-20 105.1 415 30.1
ECA246G3212 Erigeron canadensis HOM05D004112 ORTHO05D004739 2.0e-19 102.1 711 25.5
Ah.02g130260 Amaranthus hybridus HOM05D004112 ORTHO05D004739 2.6e-19 101.7 699 23.3
Zm00001eb084730 Zea mays HOM05D004112 ORTHO05D004739 3.5e-19 101.3 385 30.9
Sed0015104 Sechium edule HOM05D004112 ORTHO05D004739 5.9e-19 100.5 258 31.8
CsaV3_2G025020 Cucumis sativus L. HOM05D004112 ORTHO05D004739 1.0e-18 99.8 407 27.3
AUR62005505 Chenopodium quinoa HOM05D004112 ORTHO05D004739 8.5e-18 96.7 697 23.2
SalBow2G2073 Salvia bowleyana HOM05D004112 ORTHO05D004739 1.9e-17 95.5 735 23.1
Haze_12270 Corylus avellana HOM05D004112 ORTHO05D004739 4.2e-17 94.4 649 22.7
DCAR_026503 Daucus carota HOM05D004112 ORTHO05D004739 5.5e-17 94.0 512 26.8
MELO3C010699.2 Cucumis melo HOM05D004112 ORTHO05D004739 9.4e-17 93.2 408 27.5
Ah.08g219390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 1.6e-16 92.4 107 43.9
Hma1.2p1_0815F.1_g222700 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 4.7e-16 90.9 144 41.0
AagrBONN_evm.TU.Sc2ySwM_368.3384 Anthoceros agrestis HOM05D004112 ORTHO05D004739 6.1e-16 90.5 758 24.9
Nitab4.5_0005916g0010 Nicotiana tabacum HOM05D002060 ORTHO05D002098 6.1e-16 90.5 154 37.7
Lsat_1_v5_gn_3_30221 Lactuca sativa HOM05D004112 ORTHO05D004739 1.4e-15 89.4 92 44.6
Pp3c4_25420 Physcomitrium patens HOM05D004112 ORTHO05D004739 2.3e-15 88.6 90 48.9
Hma1.2p1_0815F.1_g222710 Hydrangea macrophylla HOM05D004112 ORTHO05D004739 6.7e-15 87.0 153 37.3
Pp3c26_4720 Physcomitrium patens HOM05D027689 ORTHO05D018028 1.1e-14 86.3 86 47.7
Oeu057548.1 Olea europaea HOM05D004112 ORTHO05D004739 2.6e-14 85.1 686 21.7
Sopen02g016280 Solanum pennellii HOM05D004112 ORTHO05D004739 4.4e-14 84.3 164 34.8
Lsat_1_v5_gn_8_152740 Lactuca sativa HOM05D000214 ORTHO05D000131 7.5e-14 83.6 105 39.0
Sopen05g008660 Solanum pennellii HOM05D004112 ORTHO05D004739 7.5e-14 83.6 198 31.8
HanXRQChr17g0539921 Helianthus annuus HOM05D004112 ORTHO05D004739 1.7e-13 82.4 92 40.2
Oeu059775.2 Olea europaea HOM05D004112 ORTHO05D004739 2.2e-13 82.0 276 27.2
Solyc02g067090.4 Solanum lycopersicum HOM05D004112 ORTHO05D004739 3.7e-13 81.3 220 30.9
Peaxi162Scf00128g00449 Petunia axillaris HOM05D004112 ORTHO05D004739 8.2e-13 80.1 727 21.7
CAN.G272.6 Capsicum annuum HOM05D004112 ORTHO05D004739 4.1e-12 77.8 116 36.2
Nitab4.5_0000212g0200 Nicotiana tabacum HOM05D002060 ORTHO05D002098 4.1e-12 77.8 178 32.0
Peaxi162Scf00117g00212 Petunia axillaris HOM05D004112 ORTHO05D004739 1.6e-11 75.9 415 27.7
Ah.03g133390 Amaranthus hybridus HOM05D004112 ORTHO05D004739 3.8e-10 71.2 179 31.3
Medtr3g086550 Medicago truncatula HOM05D004112 ORTHO05D004739 3.8e-10 71.2 820 22.1
Actinidia08126 Actinidia chinensis HOM05D004112 ORTHO05D004739 5.0e-10 70.9 628 23.9
SHI17819 Sapria himalayana HOM05D004112 ORTHO05D004739 6.5e-10 70.5 145 33.8
HPP92_011276 Vanilla planifolia HOM05D004112 ORTHO05D004739 8.5e-10 70.1 87 39.1
HPP92_011297 Vanilla planifolia HOM05D004112 ORTHO05D004739 1.5e-09 69.3 87 39.1
Os12g0288801 Oryza sativa ssp. japonica HOM05D004112 ORTHO05D004739 3.2e-09 68.2 85 37.6
C05p09990 Brassica napus HOM05D004112 ORTHO05D004739 1.2e-08 66.2 98 40.8
Nitab4.5_0000524g0060 Nicotiana tabacum HOM05D004112 ORTHO05D004739 3.6e-08 64.7 814 20.5
C05p12860 Brassica napus HOM05D000639 ORTHO05D032511 1.0e-07 63.2 105 34.3
CsaV3_2G034300 Cucumis sativus L. HOM05D004112 ORTHO05D004739 8.8e-07 60.1 106 40.6
PGSC0003DMG400025149 Solanum tuberosum HOM05D004112 ORTHO05D004739 1.2e-06 59.7 421 23.8
Peaxi162Scf00067g00115 Petunia axillaris HOM05D004112 ORTHO05D004739 2.0e-06 58.9 94 34.0
CANSAT56G3164 Cannabis sativa HOM05D004112 ORTHO05D004739 5.7e-06 57.4 171 32.7


User provided reference genes

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