Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0190 Marchantia polymorpha HOM05D004556 ORTHO05D005298 2.1e-166 589.0 305 100.0
Pp3c22_11510 Physcomitrium patens HOM05D004556 ORTHO05D005298 8.3e-110 401.0 299 69.6
ATR0665G084 Amborella trichopoda HOM05D004556 ORTHO05D005298 4.6e-108 395.2 298 66.8
SEGI_22763 Sequoiadendron giganteum HOM05D004556 ORTHO05D005298 3.0e-107 392.5 304 66.8
SMO351G0459 Selaginella moellendorffii HOM05D004556 ORTHO05D005298 3.1e-104 382.5 290 66.9
TAR362G0361 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.1e-104 382.5 297 66.3
TAR365G0624 Trochodendron aralioides HOM05D004556 ORTHO05D005298 3.1e-104 382.5 297 66.3
Dinv11531 Davidia involucrata HOM05D004556 ORTHO05D005298 4.4e-103 378.6 297 64.6
Actinidia05768 Actinidia chinensis HOM05D004556 ORTHO05D005298 9.8e-103 377.5 297 65.0
GSVIVG01021835001 Vitis vinifera HOM05D004556 ORTHO05D005298 1.3e-102 377.1 298 65.4
Gohir.A08G214400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 2.2e-102 376.3 297 65.7
Ah.14g085270 Amaranthus hybridus HOM05D004556 ORTHO05D005298 6.4e-102 374.8 299 63.5
Thecc.05G287400 Theobroma cacao HOM05D004556 ORTHO05D005298 1.1e-101 374.0 297 65.3
Gorai.004G245800 Gossypium raimondii HOM05D004556 ORTHO05D005298 1.4e-101 373.6 297 65.0
Gohir.D08G231400 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.9e-101 373.2 297 65.0
Phvul.006G100100 Phaseolus vulgaris HOM05D004556 ORTHO05D005298 1.9e-101 373.2 305 63.6
VMungo0540G1874 Vigna mungo HOM05D004556 ORTHO05D005298 2.4e-101 372.9 305 63.3
Prupe.6G340800 Prunus persica HOM05D004556 ORTHO05D005298 4.1e-101 372.1 305 63.6
Aqoxy5G00420 Aquilegia oxysepala HOM05D004556 ORTHO05D005298 5.4e-101 371.7 297 63.3
Glyma.03G245800 Glycine max HOM05D004556 ORTHO05D005298 7.0e-101 371.3 305 63.0
Duzib128G0953 Durio zibethinus HOM05D004556 ORTHO05D005298 1.2e-100 370.5 298 65.4
Lalb_Chr15g0076861 Lupinus albus HOM05D004556 ORTHO05D005298 1.2e-100 370.5 305 62.6
Ciclev10001991m.g Citrus clementina HOM05D004556 ORTHO05D005298 1.6e-100 370.2 298 63.1
HPP92_025859 Vanilla planifolia HOM05D004556 ORTHO05D005298 3.5e-100 369.0 298 65.1
PGR083G2383 Punica granatum HOM05D004556 ORTHO05D005298 4.6e-100 368.6 306 63.7
ClCG02G016480 Citrullus lanatus HOM05D004556 ORTHO05D005298 6.0e-100 368.2 300 64.0
QL03p024856 Quercus lobata HOM05D004556 ORTHO05D005298 7.8e-100 367.9 298 63.8
arahy.Tifrunner.gnm1.ann1.SCJ0TV Arachis hypogaea HOM05D004556 ORTHO05D005298 1.0e-99 367.5 308 62.7
Dinv17770 Davidia involucrata HOM05D004556 ORTHO05D005298 1.0e-99 367.5 305 62.0
arahy.Tifrunner.gnm1.ann1.ZA55QJ Arachis hypogaea HOM05D004556 ORTHO05D005298 1.7e-99 366.7 308 62.7
CSS0028825 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 2.3e-99 366.3 305 62.3
Duzib106G0883 Durio zibethinus HOM05D004556 ORTHO05D005298 3.0e-99 365.9 297 63.6
Lalb_Chr18g0045051 Lupinus albus HOM05D004556 ORTHO05D005298 3.0e-99 365.9 305 62.3
CiPaw.07G064700 Carya illinoinensis HOM05D004556 ORTHO05D005298 3.9e-99 365.5 298 63.1
CsaV3_2G004290 Cucumis sativus L. HOM05D004556 ORTHO05D005298 6.6e-99 364.8 298 62.8
Manes.09G154700 Manihot esculenta HOM05D004556 ORTHO05D005298 6.6e-99 364.8 307 62.5
Medtr7g114810 Medicago truncatula HOM05D004556 ORTHO05D005298 1.1e-98 364.0 305 62.0
PSO832G3279 Papaver somniferum HOM05D004556 ORTHO05D005298 1.1e-98 364.0 298 62.8
COL.COLO4_15298 Corchorus olitorius HOM05D004556 ORTHO05D005298 1.5e-98 363.6 298 62.8
CSS0008105 Camellia sinensis var. sinensis HOM05D004556 ORTHO05D005298 1.9e-98 363.2 305 61.3
MELO3C004366.2 Cucumis melo HOM05D004556 ORTHO05D005298 1.9e-98 363.2 298 62.4
CANSAT54G0892 Cannabis sativa HOM05D004556 ORTHO05D005298 2.5e-98 362.8 305 62.0
Glyma.19G243300 Glycine max HOM05D004556 ORTHO05D005298 3.3e-98 362.5 305 62.0
Hma1.2p1_0083F.1_g042880 Hydrangea macrophylla HOM05D004556 ORTHO05D005298 3.3e-98 362.5 305 60.7
Ca_09410_v3 Cicer arietinum L. HOM05D004556 ORTHO05D005298 5.6e-98 361.7 305 61.6
MD04G1221600 Malus domestica HOM05D004556 ORTHO05D005298 5.6e-98 361.7 305 62.0
Hund22124 Selenicereus undatus HOM05D004556 ORTHO05D005298 5.6e-98 361.7 298 63.4
Eucgr.B01695 Eucalyptus grandis HOM05D004556 ORTHO05D005298 9.5e-98 360.9 308 62.7
Sed0026396 Sechium edule HOM05D004556 ORTHO05D005298 9.5e-98 360.9 298 62.4
EL10Ac8g19247 Beta vulgaris HOM05D004556 ORTHO05D005298 2.1e-97 359.8 305 62.0
TPR.G6984 Trifolium pratense HOM05D004556 ORTHO05D005298 2.1e-97 359.8 305 61.0
Duzib177G0375 Durio zibethinus HOM05D004556 ORTHO05D005298 2.8e-97 359.4 313 60.7
FAN02G1055 Fragaria x ananassa HOM05D004556 ORTHO05D005298 2.8e-97 359.4 305 61.3
AUR62034008 Chenopodium quinoa HOM05D004556 ORTHO05D005298 3.6e-97 359.0 298 63.1
FAN05G3160 Fragaria x ananassa HOM05D004556 ORTHO05D005298 3.6e-97 359.0 298 62.1
Thhalv10021217m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 4.7e-97 358.6 301 63.8
Gorai.007G284100 Gossypium raimondii HOM05D004556 ORTHO05D005298 4.7e-97 358.6 297 63.3
Sed0015548 Sechium edule HOM05D004556 ORTHO05D005298 4.7e-97 358.6 300 63.0
FAN14G0561 Fragaria x ananassa HOM05D004556 ORTHO05D005298 6.2e-97 358.2 298 62.1
MD12G1237600 Malus domestica HOM05D004556 ORTHO05D005298 6.2e-97 358.2 305 61.3
MSTRG.5093 Avicennia marina HOM05D004556 ORTHO05D005298 8.1e-97 357.8 297 62.3
CDE10G0245 Ceratophyllum demersum HOM05D004556 ORTHO05D005298 8.1e-97 357.8 305 60.7
Sc09g0003820 Simmondsia chinensis HOM05D004556 ORTHO05D005298 8.1e-97 357.8 305 61.6
Carub.0003s0402 Capsella rubella HOM05D004556 ORTHO05D005298 1.1e-96 357.5 309 62.8
AUR62027473 Chenopodium quinoa HOM05D004556 ORTHO05D005298 1.1e-96 357.5 299 62.9
PSO210G7536 Papaver somniferum HOM05D004556 ORTHO05D005298 1.1e-96 357.5 298 61.7
FvH4_6g03340 Fragaria vesca HOM05D004556 ORTHO05D005298 1.4e-96 357.1 305 61.3
Gohir.D11G264100 Gossypium hirsutum HOM05D004556 ORTHO05D005298 1.8e-96 356.7 297 63.0
Lj1g0006589 Lotus japonicus HOM05D004556 ORTHO05D005298 1.8e-96 356.7 308 62.0
MBI11_g10323_MAGBIO Magnolia biondii HOM05D004556 ORTHO05D005298 1.8e-96 356.7 304 62.5
RcHm_v2.0_Chr3g0451841 Rosa chinensis HOM05D004556 ORTHO05D005298 1.8e-96 356.7 305 61.3
THA.LOC104818641 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 1.8e-96 356.7 302 61.9
Sabra13G0036200 Salix brachista HOM05D004556 ORTHO05D005298 3.1e-96 355.9 293 63.1
Potri.013G038700 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.0e-96 355.5 290 62.8
BcaC01g04346 Brassica carinata HOM05D004556 ORTHO05D005298 5.2e-96 355.1 301 62.8
Cpa.g.sc117.71 Carica papaya HOM05D004556 ORTHO05D005298 6.8e-96 354.8 294 61.9
Atru.chr2.783 Acer truncatum HOM05D004556 ORTHO05D005298 8.9e-96 354.4 298 60.4
Potri.005G051300 Populus trichocarpa HOM05D004556 ORTHO05D005298 1.2e-95 354.0 305 60.0
FAN05G0551 Fragaria x ananassa HOM05D004556 ORTHO05D005298 1.5e-95 353.6 298 61.4
Lsat_1_v5_gn_1_96700 Lactuca sativa HOM05D004556 ORTHO05D005298 1.5e-95 353.6 298 62.1
BcaB04g19297 Brassica carinata HOM05D004556 ORTHO05D005298 3.4e-95 352.4 301 62.8
BraA05t22977Z Brassica rapa HOM05D004556 ORTHO05D005298 4.4e-95 352.1 301 63.5
AL3G14990 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 5.8e-95 351.7 294 63.6
A03p33860 Brassica napus HOM05D004556 ORTHO05D005298 5.8e-95 351.7 301 62.5
BraA03t12560Z Brassica rapa HOM05D004556 ORTHO05D005298 5.8e-95 351.7 301 62.5
Sp3g03660 Schrenkiella parvula HOM05D004556 ORTHO05D005298 5.8e-95 351.7 301 62.8
C03p41170 Brassica napus HOM05D004556 ORTHO05D005298 7.5e-95 351.3 302 62.6
TWI56G0949 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 7.5e-95 351.3 297 61.6
AT3G04830 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 2.2e-94 349.7 301 62.5
BolC3t16405H Brassica oleracea HOM05D004556 ORTHO05D005298 2.2e-94 349.7 301 62.5
BolC5t34901H Brassica oleracea HOM05D004556 ORTHO05D005298 2.2e-94 349.7 301 62.5
Rhsim05G0160800 Rhododendron simsii HOM05D004556 ORTHO05D005298 2.9e-94 349.4 305 60.0
C05p62480 Brassica napus HOM05D004556 ORTHO05D005298 4.9e-94 348.6 301 62.5
DCAR_029537 Daucus carota HOM05D004556 ORTHO05D005298 1.4e-93 347.1 298 60.7
HanXRQChr08g0230031 Helianthus annuus HOM05D004556 ORTHO05D005298 1.9e-93 346.7 298 60.4
unitig_0.g2302 Utricularia gibba HOM05D004556 ORTHO05D005298 1.9e-93 346.7 305 57.7
SGA_v2.0_scaffold196G40974 Striga asiatica HOM05D004556 ORTHO05D005298 3.2e-93 345.9 305 59.3
Peaxi162Scf01049g00037 Petunia axillaris HOM05D004556 ORTHO05D005298 4.1e-93 345.5 297 59.3
PGSC0003DMG400022512 Solanum tuberosum HOM05D004556 ORTHO05D005298 5.4e-93 345.1 297 58.9
A05p42760 Brassica napus HOM05D004556 ORTHO05D005298 7.1e-93 344.7 301 62.1
Aa31LG5G15220 Aethionema arabicum HOM05D004556 ORTHO05D005298 1.2e-92 344.0 312 60.9
ECA232G2012 Erigeron canadensis HOM05D004556 ORTHO05D005298 2.1e-92 343.2 293 61.1
Sopen01g041350 Solanum pennellii HOM05D004556 ORTHO05D005298 2.1e-92 343.2 297 58.6
CAN.G134.134 Capsicum annuum HOM05D004556 ORTHO05D005298 2.7e-92 342.8 297 58.6
Cfa006453 Carpinus fangiana HOM05D004556 ORTHO05D005298 4.6e-92 342.0 298 60.7
Nitab4.5_0005441g0010 Nicotiana tabacum HOM05D004556 ORTHO05D005298 7.8e-92 341.3 297 58.9
Thhalv10004492m.g Eutrema salsugineum HOM05D004556 ORTHO05D005298 2.3e-91 339.7 299 59.9
SGA_v2.0_scaffold43G16266 Striga asiatica HOM05D004556 ORTHO05D005298 5.1e-91 338.6 297 59.6
Cc02_g31820 Coffea canephora HOM05D004556 ORTHO05D005298 6.6e-91 338.2 298 58.7
SalBow4G3027 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.9e-90 336.7 305 58.0
vmacro21412 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 1.9e-90 336.7 317 56.5
Carub.0006s2567 Capsella rubella HOM05D004556 ORTHO05D005298 3.3e-90 335.9 302 58.6
Manes.08G132100 Manihot esculenta HOM05D004556 ORTHO05D005298 3.3e-90 335.9 247 67.6
AT5G28220 Arabidopsis thaliana HOM05D004556 ORTHO05D005298 5.6e-90 335.1 302 59.9
Dinv00306 Davidia involucrata HOM05D004556 ORTHO05D005298 1.6e-89 333.6 248 67.3
AL6G40460 Arabidopsis lyrata HOM05D004556 ORTHO05D005298 6.2e-89 331.6 299 58.9
Os02g0127000 Oryza sativa ssp. japonica HOM05D004556 ORTHO05D005298 8.1e-89 331.3 292 61.3
AagrBONN_evm.TU.Sc2ySwM_228.926 Anthoceros agrestis HOM05D004556 ORTHO05D005298 7.6e-87 324.7 247 67.6
Zm00001eb064390 Zea mays HOM05D004556 ORTHO05D005298 2.2e-86 323.2 272 61.8
Sabra05G0045300 Salix brachista HOM05D004556 ORTHO05D005298 4.9e-86 322.0 341 52.2
Zm00001eb210860 Zea mays HOM05D004556 ORTHO05D005298 4.9e-86 322.0 288 60.1
SalBow4G2463 Salvia bowleyana HOM05D004556 ORTHO05D005298 1.9e-85 320.1 339 52.5
Solyc01g097740.3 Solanum lycopersicum HOM05D004556 ORTHO05D005298 1.7e-83 313.5 255 60.0
Nitab4.5_0005729g0050 Nicotiana tabacum HOM05D004556 ORTHO05D005298 5.1e-83 312.0 297 55.9
SHI18353 Sapria himalayana HOM05D004556 ORTHO05D005298 4.3e-82 308.9 337 50.7
HanXRQChr11g0340961 Helianthus annuus HOM05D004556 ORTHO05D005298 2.6e-79 299.7 298 56.0
Nn1g02409 Nelumbo nucifera HOM05D004556 ORTHO05D005298 1.3e-78 297.4 297 55.2
Oeu045907.1 Olea europaea HOM05D004556 ORTHO05D005298 4.2e-77 292.4 314 51.3
TWI12G0865 Tripterygium wilfordii HOM05D004556 ORTHO05D005298 3.5e-76 289.3 297 55.2
CBR_g2743 Chara braunii HOM05D004556 ORTHO05D005298 4.6e-76 288.9 309 49.5
THA.LOC104821680 Tarenaya hassleriana HOM05D004556 ORTHO05D005298 9.0e-72 274.6 210 66.2
CARHR079090 Cardamine hirsuta HOM05D004556 ORTHO05D005298 4.5e-71 272.3 217 65.4
Psat3g008080 Pisum sativum HOM05D004556 ORTHO05D005298 7.6e-71 271.6 210 65.7
Haze_04338 Corylus avellana HOM05D004556 ORTHO05D005298 3.7e-65 252.7 196 64.8
Gohir.A11G254300 Gossypium hirsutum HOM05D004556 ORTHO05D005298 7.9e-60 235.0 297 47.8
vmacro21326 Vaccinium macrocarpon HOM05D004556 ORTHO05D005298 7.9e-60 235.0 505 34.1
Actinidia30934 Actinidia chinensis HOM05D004556 ORTHO05D005298 8.7e-59 231.5 154 72.1
Lj9C665G12 Lonicera japonica HOM05D004556 ORTHO05D005298 1.6e-57 227.3 240 52.9
PRCOL_00003723 Prasinoderma coloniale HOM05D004556 ORTHO05D005298 2.1e-57 226.9 293 44.7
Cre13.g579950 Chlamydomonas reinhardtii HOM05D004556 ORTHO05D005298 4.5e-55 219.2 302 41.1
AagrBONN_evm.TU.Sc2ySwM_228.922 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.0e-51 208.0 148 68.2
Rhsim05G0161200 Rhododendron simsii HOM05D004556 ORTHO05D005298 1.0e-51 208.0 246 48.0
TAR636G2079 Trochodendron aralioides HOM05D001851 ORTHO05D002237 6.5e-38 162.2 119 65.5
Potri.013G038501 Populus trichocarpa HOM05D004556 ORTHO05D005298 4.7e-28 129.4 84 72.6
MCO08G289 Micromonas commoda HOM05D004556 ORTHO05D005298 1.2e-23 114.8 217 32.3
CBR_g57838 Chara braunii HOM05D006582 ORTHO05D008313 1.0e-22 111.7 165 38.2
AagrBONN_evm.TU.Sc2ySwM_228.821 Anthoceros agrestis HOM05D004556 ORTHO05D005298 1.5e-21 107.8 204 36.8
Migut.O00800 Erythranthe guttata HOM05D004556 ORTHO05D005298 5.5e-21 105.9 102 56.9
Lj9C668G11 Lonicera japonica HOM05D004556 ORTHO05D005298 1.0e-19 101.7 71 67.6
RcHm_v2.0_Chr6g0244381 Rosa chinensis HOM05D004556 ORTHO05D005298 1.4e-16 91.3 85 56.5
CARHR079080 Cardamine hirsuta HOM05D004556 ORTHO05D005298 2.9e-14 83.6 85 56.5
TPR.G31876 Trifolium pratense HOM05D004556 ORTHO05D005298 2.5e-13 80.5 86 52.3
BolC3t16406H Brassica oleracea HOM05D004556 ORTHO05D005298 5.2e-11 72.8 81 50.6
Lj9C665T13 Lonicera japonica HOM05D004556 ORTHO05D005298 7.7e-07 58.9 71 47.9
HanXRQChr13g0394071 Helianthus annuus HOM05D004556 ORTHO05D005298 8.6e-06 55.5 66 51.5


User provided reference genes

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