Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0156 Marchantia polymorpha HOM05D004655 ORTHO05D005567 7.1e-154 547.4 300 100.0
Pp3c19_17570 Physcomitrium patens HOM05D004655 ORTHO05D005567 1.1e-87 327.4 226 75.2
Pp3c21_14540 Physcomitrium patens HOM05D004655 ORTHO05D005567 5.3e-85 318.5 275 66.2
AagrBONN_evm.TU.Sc2ySwM_344.251 Anthoceros agrestis HOM05D004655 ORTHO05D005567 1.0e-83 314.3 281 64.4
Gorai.012G132100 Gossypium raimondii HOM05D004655 ORTHO05D005567 1.6e-81 307.0 295 59.7
Gohir.A04G106100 Gossypium hirsutum HOM05D004655 ORTHO05D005567 3.6e-81 305.8 295 59.3
Gohir.D04G146200 Gossypium hirsutum HOM05D004655 ORTHO05D005567 4.7e-81 305.4 295 59.3
Thecc.02G170400 Theobroma cacao HOM05D004655 ORTHO05D005567 4.7e-81 305.4 295 59.3
CiPaw.04G122300 Carya illinoinensis HOM05D004655 ORTHO05D005567 1.0e-80 304.3 282 60.6
Nn1g06795 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.4e-80 303.9 278 60.4
Nn1g06798 Nelumbo nucifera HOM05D004655 ORTHO05D005567 1.4e-80 303.9 278 60.4
Cfa014528 Carpinus fangiana HOM05D004655 ORTHO05D005567 2.3e-80 303.1 239 67.8
Actinidia12466 Actinidia chinensis HOM05D004655 ORTHO05D005567 6.7e-80 301.6 296 60.8
Actinidia18535 Actinidia chinensis HOM05D004655 ORTHO05D005567 6.7e-80 301.6 296 59.8
Cc05_g06070 Coffea canephora HOM05D004655 ORTHO05D005567 1.5e-79 300.4 240 69.2
SMO266G0053 Selaginella moellendorffii HOM05D004655 ORTHO05D005567 1.5e-79 300.4 201 73.1
FAN02G1121 Fragaria x ananassa HOM05D004655 ORTHO05D005567 2.6e-79 299.7 284 59.2
Os07g0558500 Oryza sativa ssp. japonica HOM05D004655 ORTHO05D005567 3.3e-79 299.3 241 66.8
FAN02G3511 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.4e-79 298.9 284 59.5
FAN05G4368 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.4e-79 298.9 284 59.5
FAN14G2207 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.4e-79 298.9 284 59.9
TAR629G1482 Trochodendron aralioides HOM05D004655 ORTHO05D005567 4.4e-79 298.9 295 60.3
ATR0693G119 Amborella trichopoda HOM05D004655 ORTHO05D005567 5.7e-79 298.5 295 59.7
Migut.H01014 Erythranthe guttata HOM05D004655 ORTHO05D005567 5.7e-79 298.5 292 57.9
FvH4_6g44420 Fragaria vesca HOM05D004655 ORTHO05D005567 5.7e-79 298.5 284 59.9
Thhalv10002049m.g Eutrema salsugineum HOM05D004655 ORTHO05D005567 7.5e-79 298.1 295 56.6
MBI18_g27693_MAGBIO Magnolia biondii HOM05D004655 ORTHO05D005567 7.5e-79 298.1 295 60.3
Phvul.011G110700 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 1.7e-78 297.0 236 67.4
Zm00001eb324100 Zea mays HOM05D004655 ORTHO05D005567 1.7e-78 297.0 295 60.0
MSTRG.14176 Avicennia marina HOM05D004655 ORTHO05D005567 2.2e-78 296.6 295 56.9
CiPaw.03G168300 Carya illinoinensis HOM05D004655 ORTHO05D005567 2.2e-78 296.6 299 57.5
Nn1g03859 Nelumbo nucifera HOM05D004655 ORTHO05D005567 2.2e-78 296.6 289 58.1
VMungo1127G2245 Vigna mungo HOM05D004655 ORTHO05D005567 3.7e-78 295.8 244 65.6
THA.LOC104804073 Tarenaya hassleriana HOM05D004655 ORTHO05D005567 6.3e-78 295.0 291 58.8
AT2G20890 Arabidopsis thaliana HOM05D004655 ORTHO05D005567 1.1e-77 294.3 241 63.1
Duzib132G0437 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-77 294.3 295 58.6
Duzib132G0466 Durio zibethinus HOM05D004655 ORTHO05D005567 1.1e-77 294.3 295 58.6
Sopen07g028730 Solanum pennellii HOM05D004655 ORTHO05D005567 1.1e-77 294.3 290 57.9
PGSC0003DMG400018330 Solanum tuberosum HOM05D004655 ORTHO05D005567 1.1e-77 294.3 290 58.3
RcHm_v2.0_Chr2g0161411 Rosa chinensis HOM05D004655 ORTHO05D005567 1.4e-77 293.9 298 58.4
CSS0017466 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.8e-77 293.5 295 57.3
CSS0020863 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 1.8e-77 293.5 241 64.3
Carub.0003s3556 Capsella rubella HOM05D004655 ORTHO05D005567 2.4e-77 293.1 270 59.6
MD17G1085500 Malus domestica HOM05D004655 ORTHO05D005567 2.4e-77 293.1 291 58.8
Psat7g149680 Pisum sativum HOM05D004655 ORTHO05D005567 2.4e-77 293.1 241 64.7
COL.COLO4_13659 Corchorus olitorius HOM05D004655 ORTHO05D005567 3.1e-77 292.7 283 58.0
Dinv13829 Davidia involucrata HOM05D004655 ORTHO05D005567 3.1e-77 292.7 295 57.3
Phvul.005G108600 Phaseolus vulgaris HOM05D004655 ORTHO05D005567 3.1e-77 292.7 296 58.1
Lj3g0013026 Lotus japonicus HOM05D004655 ORTHO05D005567 4.1e-77 292.4 295 56.9
arahy.Tifrunner.gnm1.ann1.81TW8H Arachis hypogaea HOM05D004655 ORTHO05D005567 5.3e-77 292.0 294 58.5
Sp3g34160 Schrenkiella parvula HOM05D004655 ORTHO05D005567 5.3e-77 292.0 298 57.4
CSS0004933 Camellia sinensis var. sinensis HOM05D004655 ORTHO05D005567 7.0e-77 291.6 241 63.9
MD09G1097200 Malus domestica HOM05D004655 ORTHO05D005567 9.1e-77 291.2 295 56.9
Medtr4g045980 Medicago truncatula HOM05D004655 ORTHO05D005567 9.1e-77 291.2 220 68.6
Sed0025834 Sechium edule HOM05D004655 ORTHO05D005567 9.1e-77 291.2 237 66.2
Atru.chr6.3084 Acer truncatum HOM05D004655 ORTHO05D005567 1.2e-76 290.8 242 64.9
QL08p036998 Quercus lobata HOM05D004655 ORTHO05D005567 1.6e-76 290.4 296 57.1
arahy.Tifrunner.gnm1.ann1.S2JPPU Arachis hypogaea HOM05D004655 ORTHO05D005567 2.0e-76 290.0 294 58.2
C08p41940 Brassica napus HOM05D004655 ORTHO05D005567 2.0e-76 290.0 296 56.1
Ca_01544_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 2.0e-76 290.0 282 57.1
VMungo1080G0396 Vigna mungo HOM05D004655 ORTHO05D005567 2.0e-76 290.0 299 57.2
BcaB08g34948 Brassica carinata HOM05D004655 ORTHO05D005567 2.7e-76 289.7 295 56.3
CANSAT64G1156 Cannabis sativa HOM05D004655 ORTHO05D005567 3.5e-76 289.3 289 58.5
CARHR111640 Cardamine hirsuta HOM05D004655 ORTHO05D005567 3.5e-76 289.3 238 64.7
TAR627G0814 Trochodendron aralioides HOM05D004655 ORTHO05D005567 3.5e-76 289.3 297 58.9
Aa31LG8G17800 Aethionema arabicum HOM05D004655 ORTHO05D005567 4.5e-76 288.9 300 55.7
arahy.Tifrunner.gnm1.ann1.YR7HYJ Arachis hypogaea HOM05D004655 ORTHO05D005567 5.9e-76 288.5 299 58.2
A09p58650 Brassica napus HOM05D004655 ORTHO05D005567 5.9e-76 288.5 296 54.4
BraA09t41251Z Brassica rapa HOM05D004655 ORTHO05D005567 5.9e-76 288.5 296 54.4
Lalb_Chr22g0356311 Lupinus albus HOM05D004655 ORTHO05D005567 5.9e-76 288.5 283 58.3
TWI36G0222 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 5.9e-76 288.5 298 58.1
BcaC07g41186 Brassica carinata HOM05D004655 ORTHO05D005567 7.7e-76 288.1 296 54.7
BolC8t51757H Brassica oleracea HOM05D004655 ORTHO05D005567 7.7e-76 288.1 296 54.7
Glyma.06G299100 Glycine max HOM05D004655 ORTHO05D005567 1.0e-75 287.7 291 59.8
GSVIVG01029990001 Vitis vinifera HOM05D004655 ORTHO05D005567 1.0e-75 287.7 231 64.9
Glyma.12G106600 Glycine max HOM05D004655 ORTHO05D005567 1.3e-75 287.3 292 58.9
DCAR_019200 Daucus carota HOM05D004655 ORTHO05D005567 1.7e-75 287.0 209 68.9
Prupe.3G228700 Prunus persica HOM05D004655 ORTHO05D005567 1.7e-75 287.0 282 57.8
TWI75G0473 Tripterygium wilfordii HOM05D004655 ORTHO05D005567 1.7e-75 287.0 295 57.3
MELO3C018772.2 Cucumis melo HOM05D004655 ORTHO05D005567 2.2e-75 286.6 308 56.2
Medtr2g089795 Medicago truncatula HOM05D004655 ORTHO05D005567 2.9e-75 286.2 282 57.4
AUR62037119 Chenopodium quinoa HOM05D004655 ORTHO05D005567 3.8e-75 285.8 284 58.8
Lalb_Chr01g0005451 Lupinus albus HOM05D004655 ORTHO05D005567 3.8e-75 285.8 297 57.2
PGR042G1100 Punica granatum HOM05D004655 ORTHO05D005567 3.8e-75 285.8 295 56.3
Glyma.13G302100 Glycine max HOM05D004655 ORTHO05D005567 5.0e-75 285.4 285 57.9
Glyma.12G200200 Glycine max HOM05D004655 ORTHO05D005567 6.5e-75 285.0 299 56.9
Psat5g269080 Pisum sativum HOM05D004655 ORTHO05D005567 6.5e-75 285.0 261 59.0
SalBow1G2826 Salvia bowleyana HOM05D004655 ORTHO05D005567 6.5e-75 285.0 218 64.7
HanXRQChr06g0171121 Helianthus annuus HOM05D004655 ORTHO05D005567 8.5e-75 284.6 295 56.9
ClCG00G002920 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.1e-74 284.3 302 57.0
ClCG02G001360 Citrullus lanatus HOM05D004655 ORTHO05D005567 1.1e-74 284.3 302 57.0
TPR.G21652 Trifolium pratense HOM05D004655 ORTHO05D005567 1.1e-74 284.3 241 63.5
arahy.Tifrunner.gnm1.ann1.XZ54ZU Arachis hypogaea HOM05D004655 ORTHO05D005567 1.5e-74 283.9 299 57.2
CsaV3_7G004070 Cucumis sativus L. HOM05D004655 ORTHO05D005567 1.5e-74 283.9 304 55.3
TPR.G18073 Trifolium pratense HOM05D004655 ORTHO05D005567 1.5e-74 283.9 295 55.9
AL3G54160 Arabidopsis lyrata HOM05D004655 ORTHO05D005567 1.9e-74 283.5 289 56.7
HPP92_012362 Vanilla planifolia HOM05D004655 ORTHO05D005567 1.9e-74 283.5 233 64.8
Aqoxy1G03905 Aquilegia oxysepala HOM05D004655 ORTHO05D005567 2.5e-74 283.1 304 54.3
ECA246G4617 Erigeron canadensis HOM05D004655 ORTHO05D005567 3.2e-74 282.7 220 65.5
Manes.13G152400 Manihot esculenta HOM05D004655 ORTHO05D005567 3.2e-74 282.7 296 57.8
vmacro12257 Vaccinium macrocarpon HOM05D004655 ORTHO05D005567 3.2e-74 282.7 295 57.6
EL10Ac9g20731 Beta vulgaris HOM05D004655 ORTHO05D005567 4.2e-74 282.3 296 58.4
Hma1.2p1_0662F.1_g198360 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 4.2e-74 282.3 300 57.7
Sc12g0002690 Simmondsia chinensis HOM05D004655 ORTHO05D005567 7.2e-74 281.6 296 57.1
AUR62032763 Chenopodium quinoa HOM05D004655 ORTHO05D005567 1.2e-73 280.8 283 57.6
PSO675G0243 Papaver somniferum HOM05D004655 ORTHO05D005567 1.2e-73 280.8 295 54.9
Ah.01g005210 Amaranthus hybridus HOM05D004655 ORTHO05D005567 1.6e-73 280.4 294 57.8
Eucgr.A01774 Eucalyptus grandis HOM05D004655 ORTHO05D005567 1.6e-73 280.4 298 55.0
PSO541G1277 Papaver somniferum HOM05D004655 ORTHO05D005567 1.6e-73 280.4 295 54.9
Ciclev10016098m.g Citrus clementina HOM05D004655 ORTHO05D005567 2.1e-73 280.0 298 56.7
Lsat_1_v5_gn_3_40720 Lactuca sativa HOM05D004655 ORTHO05D005567 2.7e-73 279.6 311 53.1
unitig_21.g20001 Utricularia gibba HOM05D004655 ORTHO05D005567 2.7e-73 279.6 295 55.3
Lj1C737G5 Lonicera japonica HOM05D004655 ORTHO05D005567 3.6e-73 279.3 332 51.2
Potri.019G117900 Populus trichocarpa HOM05D004655 ORTHO05D005567 4.7e-73 278.9 231 64.1
Ca_20707_v3 Cicer arietinum L. HOM05D004655 ORTHO05D005567 1.0e-72 277.7 275 57.1
Haze_13070 Corylus avellana HOM05D004655 ORTHO05D005567 1.4e-72 277.3 300 54.3
CAN.G508.2 Capsicum annuum HOM05D004655 ORTHO05D005567 2.3e-72 276.6 211 67.8
DCAR_012973 Daucus carota HOM05D004655 ORTHO05D005567 4.0e-72 275.8 295 55.3
Potri.013G148400 Populus trichocarpa HOM05D004655 ORTHO05D005567 2.6e-71 273.1 296 56.1
Rhsim06G0153100 Rhododendron simsii HOM05D004655 ORTHO05D005567 9.8e-71 271.2 321 52.3
SGA_v2.0_scaffold70G23458 Striga asiatica HOM05D004655 ORTHO05D005567 9.8e-71 271.2 275 57.1
Lj3g0017119 Lotus japonicus HOM05D004655 ORTHO05D005567 1.7e-70 270.4 291 55.3
SGA_v2.0_scaffold34G13911 Striga asiatica HOM05D004655 ORTHO05D005567 5.4e-69 265.4 258 57.4
Duzib052G1220 Durio zibethinus HOM05D004655 ORTHO05D005567 7.0e-69 265.0 198 68.7
Hma1.2p1_0565F.1_g179650 Hydrangea macrophylla HOM05D004655 ORTHO05D005567 7.0e-69 265.0 296 56.8
SalBow7G2858 Salvia bowleyana HOM05D004655 ORTHO05D005567 7.0e-69 265.0 251 57.8
Duzib248G0290 Durio zibethinus HOM05D004655 ORTHO05D005567 5.9e-68 261.9 193 71.0
Peaxi162Scf00007g02516 Petunia axillaris HOM05D004655 ORTHO05D005567 3.6e-65 252.7 321 49.2
Sabra19G0118300 Salix brachista HOM05D004655 ORTHO05D005567 8.0e-65 251.5 343 48.7
Sabra19G0135300 Salix brachista HOM05D004655 ORTHO05D005567 6.8e-64 248.4 343 48.4
Zm00001eb106830 Zea mays HOM05D004655 ORTHO05D005567 2.0e-63 246.9 185 68.6
Nitab4.5_0000769g0070 Nicotiana tabacum HOM05D004655 ORTHO05D005567 5.7e-63 245.4 216 59.7
Lj8C118T0 Lonicera japonica HOM05D004655 ORTHO05D005567 2.8e-62 243.0 222 61.3
Nitab4.5_0001019g0090 Nicotiana tabacum HOM05D004655 ORTHO05D005567 1.4e-61 240.7 205 61.5
Sabra13G0119700 Salix brachista HOM05D004655 ORTHO05D005567 1.8e-61 240.4 239 57.7
CBR_g78876 Chara braunii HOM05D004655 ORTHO05D005567 6.6e-59 231.9 235 52.3
PRCOL_00003577 Prasinoderma coloniale HOM05D004655 ORTHO05D005567 1.6e-57 227.3 236 51.3
FAN09G1462 Fragaria x ananassa HOM05D004655 ORTHO05D005567 4.7e-57 225.7 282 50.4
Ah.01g014420 Amaranthus hybridus HOM05D004655 ORTHO05D005567 3.4e-55 219.5 236 55.5
AUR62037125 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.1e-53 214.5 267 51.7
Sc12g0003940 Simmondsia chinensis HOM05D004655 ORTHO05D005567 4.1e-53 212.6 237 52.7
AUR62032764 Chenopodium quinoa HOM05D001718 ORTHO05D008006 1.2e-49 201.1 266 47.4
Cre13.g562850 Chlamydomonas reinhardtii HOM05D004655 ORTHO05D005567 2.1e-49 200.3 257 47.5
MCO07G428 Micromonas commoda HOM05D004655 ORTHO05D005567 1.9e-42 177.2 260 42.7
Cpa.g.sc34.80 Carica papaya HOM05D004655 ORTHO05D005567 8.1e-41 171.8 197 51.3
Dinv15502 Davidia involucrata HOM05D004655 ORTHO05D005567 6.8e-40 168.7 193 51.8
CDE05G0437 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 3.4e-39 166.4 149 57.7
CDE05G0433 Ceratophyllum demersum HOM05D004655 ORTHO05D005567 4.6e-36 156.0 184 49.5
SEGI_32441 Sequoiadendron giganteum HOM05D004655 ORTHO05D005567 7.8e-36 155.2 103 70.9
VMungo0720G1089 Vigna mungo HOM05D004655 ORTHO05D005567 1.1e-16 91.7 59 76.3
Sed0002097 Sechium edule HOM05D004655 ORTHO05D005567 5.4e-13 79.3 91 47.3
Cpa.g.sc34.79 Carica papaya HOM05D004655 ORTHO05D005567 7.9e-12 75.5 50 78.0
Oeu029438.1 Olea europaea HOM05D004655 ORTHO05D005567 1.8e-11 74.3 43 79.1
ClCG02G001370 Citrullus lanatus HOM05D004655 ORTHO05D005567 2.1e-09 67.4 60 65.0
Sabra19G0118700 Salix brachista HOM05D004655 ORTHO05D005567 2.8e-09 67.0 44 72.7
Hma1.2p1_0479F.1_g161430 Hydrangea macrophylla HOM05D001315 ORTHO05D001618 9.0e-08 62.0 48 64.6


User provided reference genes

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