Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 4.3e-74 281.2 136 100.0
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 7.8e-68 260.4 136 91.2
AagrBONN_evm.TU.Sc2ySwM_362.569 Anthoceros agrestis HOM05D004554 ORTHO05D005360 1.9e-66 255.8 136 88.2
PGSC0003DMG402028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 4.1e-61 238.0 136 80.9
SEGI_00661 Sequoiadendron giganteum HOM05D004554 ORTHO05D005360 9.2e-61 236.9 136 80.9
MSTRG.4713 Avicennia marina HOM05D004554 ORTHO05D005360 3.5e-60 235.0 136 79.4
CSS0043216 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 3.5e-60 235.0 136 80.1
AL2G40970 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.6e-60 234.6 136 79.4
AL6G52910 Arabidopsis lyrata HOM05D004554 ORTHO05D005360 4.6e-60 234.6 136 79.4
AT1G80500 Arabidopsis thaliana HOM05D004554 ORTHO05D005360 4.6e-60 234.6 136 79.4
Migut.D01058 Erythranthe guttata HOM05D004554 ORTHO05D005360 6.0e-60 234.2 136 78.7
Dinv30578 Davidia involucrata HOM05D004554 ORTHO05D005360 1.3e-59 233.0 136 79.4
ECA232G3015 Erigeron canadensis HOM05D004554 ORTHO05D005360 1.3e-59 233.0 136 76.5
Carub.0002s1001 Capsella rubella HOM05D004554 ORTHO05D005360 1.7e-59 232.6 136 78.7
CARHR074020 Cardamine hirsuta HOM05D004554 ORTHO05D005360 2.3e-59 232.3 136 78.7
TWI31G0401 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 3.9e-59 231.5 136 77.2
Duzib268G0645 Durio zibethinus HOM05D004554 ORTHO05D005360 5.1e-59 231.1 136 77.2
Oeu052276.1 Olea europaea HOM05D004554 ORTHO05D005360 5.1e-59 231.1 136 78.7
Sp5g35300 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.1e-59 231.1 136 77.9
Gohir.D02G111000 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.6e-59 230.7 136 77.2
Gorai.005G125900 Gossypium raimondii HOM05D004554 ORTHO05D005360 6.6e-59 230.7 136 77.2
Nitab4.5_0005235g0030 Nicotiana tabacum HOM05D004554 ORTHO05D005360 6.6e-59 230.7 138 79.0
Solyc06g068030.3 Solanum lycopersicum HOM05D004554 ORTHO05D005360 6.6e-59 230.7 138 79.0
CANSAT56G2605 Cannabis sativa HOM05D004554 ORTHO05D005360 8.7e-59 230.3 136 76.5
Thecc.04G171500 Theobroma cacao HOM05D004554 ORTHO05D005360 8.7e-59 230.3 136 77.2
Glyma.04G207300 Glycine max HOM05D004554 ORTHO05D005360 1.1e-58 229.9 136 78.7
Nitab4.5_0000620g0010 Nicotiana tabacum HOM05D004554 ORTHO05D005360 1.5e-58 229.6 138 78.3
PSO170G6065 Papaver somniferum HOM05D004554 ORTHO05D005360 1.5e-58 229.6 136 76.5
Psat5g058840 Pisum sativum HOM05D004554 ORTHO05D005360 1.5e-58 229.6 136 77.9
TPR.G7873 Trifolium pratense HOM05D004554 ORTHO05D005360 1.5e-58 229.6 136 77.9
Zm00001eb111730 Zea mays HOM05D004554 ORTHO05D005360 1.9e-58 229.2 136 77.2
CiPaw.03G115100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.5e-58 228.8 136 76.5
Ciclev10022803m.g Citrus clementina HOM05D004554 ORTHO05D005360 2.5e-58 228.8 136 76.5
Duzib151G1169 Durio zibethinus HOM05D004554 ORTHO05D005360 2.5e-58 228.8 136 76.5
Phvul.009G152000 Phaseolus vulgaris HOM05D004554 ORTHO05D005360 2.5e-58 228.8 136 77.9
Gohir.A02G092800 Gossypium hirsutum HOM05D004554 ORTHO05D005360 3.3e-58 228.4 136 76.5
Eucgr.E03470 Eucalyptus grandis HOM05D004554 ORTHO05D005360 4.3e-58 228.0 136 75.7
PGR119G2244 Punica granatum HOM05D004554 ORTHO05D005360 4.3e-58 228.0 136 76.5
THA.LOC104819505 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 4.3e-58 228.0 136 77.2
Potri.003G183400 Populus trichocarpa HOM05D004554 ORTHO05D005360 5.6e-58 227.6 136 75.0
Sp2g09550 Schrenkiella parvula HOM05D004554 ORTHO05D005360 5.6e-58 227.6 136 77.2
Actinidia08808 Actinidia chinensis HOM05D004554 ORTHO05D005360 7.3e-58 227.3 136 76.5
Glyma.06G158300 Glycine max HOM05D004554 ORTHO05D005360 7.3e-58 227.3 136 77.2
Lsat_1_v5_gn_4_105840 Lactuca sativa HOM05D004554 ORTHO05D005360 1.6e-57 226.1 137 76.6
Potri.001G043400 Populus trichocarpa HOM05D004554 ORTHO05D005360 1.6e-57 226.1 136 75.0
CSS0011930 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.1e-57 225.7 136 77.2
MELO3C023193.2 Cucumis melo HOM05D004554 ORTHO05D005360 2.1e-57 225.7 136 75.7
Manes.04G101300 Manihot esculenta HOM05D004554 ORTHO05D005360 2.1e-57 225.7 136 75.7
Lj1g0025297 Lotus japonicus HOM05D004554 ORTHO05D005360 2.8e-57 225.3 136 75.7
Duzib212G0633 Durio zibethinus HOM05D004554 ORTHO05D005360 3.6e-57 224.9 136 73.5
THA.LOC104807163 Tarenaya hassleriana HOM05D004554 ORTHO05D005360 3.6e-57 224.9 136 76.5
Os02g0613600 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 4.7e-57 224.6 136 75.7
Sed0018246 Sechium edule HOM05D004554 ORTHO05D005360 8.1e-57 223.8 136 75.0
Hund00544 Selenicereus undatus HOM05D004554 ORTHO05D005360 8.1e-57 223.8 136 75.7
CDE01G0639 Ceratophyllum demersum HOM05D004554 ORTHO05D005360 1.4e-56 223.0 136 75.0
Hma1.2p1_0515F.1_g170190 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.4e-56 223.0 136 76.5
PSO541G2287 Papaver somniferum HOM05D004554 ORTHO05D005360 1.4e-56 223.0 136 76.5
PSO675G8776 Papaver somniferum HOM05D004554 ORTHO05D005360 1.4e-56 223.0 136 76.5
Prupe.1G580600 Prunus persica HOM05D004554 ORTHO05D005360 1.8e-56 222.6 137 76.6
Zm00001eb331160 Zea mays HOM05D004554 ORTHO05D005360 1.8e-56 222.6 137 76.6
CiPaw.04G077100 Carya illinoinensis HOM05D004554 ORTHO05D005360 2.4e-56 222.2 136 72.8
Manes.11G068800 Manihot esculenta HOM05D004554 ORTHO05D005360 3.1e-56 221.9 136 75.0
CSS0029734 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 9.0e-56 220.3 148 71.6
BraA09t37732Z Brassica rapa HOM05D004554 ORTHO05D005360 2.0e-55 219.2 149 71.1
HanXRQChr16g0500531 Helianthus annuus HOM05D004554 ORTHO05D005360 2.0e-55 219.2 172 62.8
RcHm_v2.0_Chr1g0339521 Rosa chinensis HOM05D004554 ORTHO05D005360 2.6e-55 218.8 137 75.2
CSS0017610 Camellia sinensis var. sinensis HOM05D004554 ORTHO05D005360 2.2e-54 215.7 159 66.7
vmacro21051 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 2.1e-52 209.1 153 66.0
Gorai.006G230100 Gossypium raimondii HOM05D004554 ORTHO05D005360 1.7e-51 206.1 136 70.6
VMungo1309G1053 Vigna mungo HOM05D004554 ORTHO05D005360 3.0e-51 205.3 136 72.8
Gohir.D09G206200 Gossypium hirsutum HOM05D004554 ORTHO05D005360 6.6e-51 204.1 136 69.9
A09p21270 Brassica napus HOM05D003109 ORTHO05D003578 3.3e-50 201.8 139 69.1
Medtr1g102650 Medicago truncatula HOM05D004554 ORTHO05D005360 7.3e-50 200.7 169 60.4
FAN10G0691 Fragaria x ananassa HOM05D004554 ORTHO05D005360 8.1e-49 197.2 189 54.5
Peaxi162Scf00207g00743 Petunia axillaris HOM05D004554 ORTHO05D005360 6.9e-48 194.1 136 69.1
Gohir.A09G212650 Gossypium hirsutum HOM05D004554 ORTHO05D005360 2.4e-45 185.7 120 71.7
Os04g0503800 Oryza sativa ssp. japonica HOM05D004554 ORTHO05D005360 1.0e-43 180.3 117 70.1
Hma1.2p1_1324F.1_g275710 Hydrangea macrophylla HOM05D004554 ORTHO05D005360 1.5e-42 176.4 124 67.7
Sc10g0005760 Simmondsia chinensis HOM05D004554 ORTHO05D005360 4.3e-42 174.9 105 75.2
TWI75G0475 Tripterygium wilfordii HOM05D004554 ORTHO05D005360 5.6e-42 174.5 106 72.6
Sc25g0002650 Simmondsia chinensis HOM05D004554 ORTHO05D005360 3.7e-41 171.8 105 74.3
Aa31sc43G10 Aethionema arabicum HOM05D004554 ORTHO05D005360 6.2e-41 171.0 136 63.2
Thhalv10019800m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.5e-39 164.9 169 52.7
SGA_v2.0_scaffold16G07612 Striga asiatica HOM05D004554 ORTHO05D005360 4.5e-39 164.9 107 69.2
unitig_899.g14783 Utricularia gibba HOM05D004554 ORTHO05D005360 1.3e-38 163.3 136 62.5
vmacro16909 Vaccinium macrocarpon HOM05D004554 ORTHO05D005360 4.9e-38 161.4 136 61.0
Sabra01G0029900 Salix brachista HOM05D004554 ORTHO05D005360 1.4e-37 159.8 136 58.1
MCO03G231 Micromonas commoda HOM05D004554 ORTHO05D005360 3.5e-36 155.2 142 47.9
SMO244G0023 Selaginella moellendorffii HOM05D004554 ORTHO05D005360 6.0e-36 154.5 158 56.3
FAN01G0304 Fragaria x ananassa HOM05D004554 ORTHO05D007400 7.9e-36 154.1 138 57.2
Lj1g0023737 Lotus japonicus HOM05D004554 ORTHO05D005360 2.3e-35 152.5 156 52.6
PRCOL_00001690 Prasinoderma coloniale HOM05D004554 ORTHO05D005360 3.0e-35 152.1 128 53.9
BcaB07g30930 Brassica carinata HOM05D004554 ORTHO05D005360 1.9e-34 149.4 136 55.9
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 2.5e-34 149.1 133 51.1
SGA_v2.0_scaffold117G32370 Striga asiatica HOM05D004554 ORTHO05D005360 1.6e-33 146.4 136 54.4
Thhalv10001067m.g Eutrema salsugineum HOM05D004554 ORTHO05D005360 4.8e-33 144.8 80 85.0
Carub.0002s0990 Capsella rubella HOM05D004554 ORTHO05D005360 5.3e-32 141.4 80 83.8
Sopen06g025310 Solanum pennellii HOM05D004554 ORTHO05D005360 8.4e-30 134.0 82 74.4
PGSC0003DMG401028512 Solanum tuberosum HOM05D004554 ORTHO05D005360 1.4e-29 133.3 82 74.4
CAN.G395.49 Capsicum annuum HOM05D004554 ORTHO05D005360 3.2e-29 132.1 77 76.6
HanXRQChr09g0274941 Helianthus annuus HOM05D004554 ORTHO05D005360 3.2e-29 132.1 77 74.0
SalBow2G1085 Salvia bowleyana HOM05D004554 ORTHO05D005360 4.2e-29 131.7 82 72.0
A07p45180 Brassica napus HOM05D004554 ORTHO05D005360 9.3e-29 130.6 77 74.0
C06p54030 Brassica napus HOM05D004554 ORTHO05D005360 9.3e-29 130.6 77 74.0
BolC6t40416H Brassica oleracea HOM05D004554 ORTHO05D005360 9.3e-29 130.6 77 74.0
BraA07t32021Z Brassica rapa HOM05D004554 ORTHO05D005360 9.3e-29 130.6 77 74.0
SalBow3G2596 Salvia bowleyana HOM05D004554 ORTHO05D005360 1.2e-28 130.2 77 74.0
Atru.chr2.1839 Acer truncatum HOM05D004554 ORTHO05D005360 2.1e-28 129.4 81 71.6
Rhsim08G0215600 Rhododendron simsii HOM05D004554 ORTHO05D005360 3.5e-28 128.6 77 75.3
Rhsim12G0192700 Rhododendron simsii HOM05D004554 ORTHO05D005360 4.6e-28 128.3 77 75.3
GSVIVG01017278001 Vitis vinifera HOM05D004554 ORTHO05D005360 1.0e-27 127.1 82 68.3
QL10p039943 Quercus lobata HOM05D004554 ORTHO05D005360 1.3e-27 126.7 77 71.4
Cc02_g38630 Coffea canephora HOM05D004554 ORTHO05D005360 1.8e-27 126.3 77 71.4
Oeu053426.1 Olea europaea HOM05D004554 ORTHO05D005360 2.3e-27 125.9 77 71.4
QL06p045297 Quercus lobata HOM05D004554 ORTHO05D005360 2.3e-27 125.9 77 71.4
BcaC04g21821 Brassica carinata HOM05D004554 ORTHO05D005360 3.0e-27 125.6 82 68.3
BolC9t55589H Brassica oleracea HOM05D004554 ORTHO05D005360 3.0e-27 125.6 82 68.3
COL.COLO4_28385 Corchorus olitorius HOM05D004554 ORTHO05D005360 3.0e-27 125.6 77 70.1
Lalb_Chr08g0237951 Lupinus albus HOM05D004554 ORTHO05D005360 3.9e-27 125.2 80 70.0
MD08G1243100 Malus domestica HOM05D004554 ORTHO05D005360 5.1e-27 124.8 77 70.1
ATR0138G017 Amborella trichopoda HOM05D004554 ORTHO05D005360 8.7e-27 124.0 76 75.0
arahy.Tifrunner.gnm1.ann1.HM0BYB Arachis hypogaea HOM05D004554 ORTHO05D005360 8.7e-27 124.0 77 71.4
arahy.Tifrunner.gnm1.ann1.NV3HYF Arachis hypogaea HOM05D004554 ORTHO05D005360 8.7e-27 124.0 77 71.4
arahy.Tifrunner.gnm1.ann1.YS1HQ5 Arachis hypogaea HOM05D004554 ORTHO05D005360 8.7e-27 124.0 77 71.4
arahy.Tifrunner.gnm1.ann1.Z4TQX9 Arachis hypogaea HOM05D004554 ORTHO05D005360 1.5e-26 123.2 77 71.4
MD15G1436700 Malus domestica HOM05D004554 ORTHO05D005360 1.9e-26 122.9 77 68.8
FvH4_7g07440 Fragaria vesca HOM05D004554 ORTHO05D005360 3.3e-26 122.1 77 68.8
FAN06G4122 Fragaria x ananassa HOM05D004554 ORTHO05D005360 3.3e-26 122.1 77 68.8
Ah.11g047570 Amaranthus hybridus HOM05D004554 ORTHO05D005360 4.3e-26 121.7 77 70.1
ClCG02G000050 Citrullus lanatus HOM05D004554 ORTHO05D005360 4.3e-26 121.7 77 68.8
CsaV3_2G019710 Cucumis sativus L. HOM05D004554 ORTHO05D005360 4.3e-26 121.7 77 68.8
Lj9P502T35 Lonicera japonica HOM05D004554 ORTHO05D005360 5.7e-26 121.3 87 66.7
FAN03G1590 Fragaria x ananassa HOM05D004554 ORTHO05D005360 2.8e-25 119.0 77 67.5
Hund06576 Selenicereus undatus HOM05D004554 ORTHO05D005360 4.8e-25 118.2 77 68.8
Lsat_1_v5_gn_5_132260 Lactuca sativa HOM05D004554 ORTHO05D005360 2.4e-24 115.9 126 47.6
CBR_g36380 Chara braunii HOM05D004554 ORTHO05D005360 3.1e-24 115.5 75 65.3
EL10Ac6g14261 Beta vulgaris HOM05D004554 ORTHO05D005360 9.0e-24 114.0 75 68.0
Rhsim12G0192800 Rhododendron simsii HOM05D004554 ORTHO05D005360 2.0e-23 112.8 60 86.7
DCAR_025490 Daucus carota HOM05D004554 ORTHO05D005360 3.4e-23 112.1 74 64.9
Lj5A69T38 Lonicera japonica HOM05D004554 ORTHO05D005360 4.5e-23 111.7 116 51.7
Eucgr.L03064 Eucalyptus grandis HOM05D004554 ORTHO05D005360 2.9e-22 109.0 60 81.7
Cc02_g38640 Coffea canephora HOM05D004554 ORTHO05D005360 1.2e-20 103.6 56 85.7
Lalb_Chr08g0237961 Lupinus albus HOM05D004554 ORTHO05D005360 1.2e-20 103.6 56 85.7
Atru.chr2.1838 Acer truncatum HOM05D004554 ORTHO05D005360 2.1e-20 102.8 56 83.9
CsaV3_2G019720 Cucumis sativus L. HOM05D004554 ORTHO05D005360 2.7e-20 102.4 56 82.1
HanXRQChr09g0274931 Helianthus annuus HOM05D004554 ORTHO05D005360 3.6e-20 102.1 56 82.1
Carub.0002s2706 Capsella rubella HOM05D004554 ORTHO05D005360 4.6e-20 101.7 56 85.7
MD08G1243200 Malus domestica HOM05D004554 ORTHO05D005360 4.6e-20 101.7 56 83.9
MD15G1436800 Malus domestica HOM05D004554 ORTHO05D005360 4.6e-20 101.7 56 83.9
Ca_17005_v3 Cicer arietinum L. HOM05D004554 ORTHO05D005360 3.7e-17 92.0 57 68.4
Medtr3g097015 Medicago truncatula HOM05D004554 ORTHO05D005360 6.3e-17 91.3 56 69.6
Sed0002995 Sechium edule HOM05D004554 ORTHO05D005360 2.4e-16 89.4 128 39.8
TAR626G1579 Trochodendron aralioides HOM05D004554 ORTHO05D005360 4.5e-15 85.1 50 74.0
C09p27060 Brassica napus HOM05D004554 ORTHO05D005360 1.0e-14 84.0 56 64.3
RcHm_v2.0_Chr2g0154941 Rosa chinensis HOM05D004554 ORTHO05D005360 1.9e-13 79.7 44 79.5
Haze_26443 Corylus avellana HOM05D000849 ORTHO05D005360 2.5e-13 79.3 116 37.1
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 5.7e-10 68.2 139 29.5
arahy.Tifrunner.gnm1.ann1.MTW2QA Arachis hypogaea HOM05D004554 ORTHO05D005360 7.4e-10 67.8 45 64.4
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 5.3e-08 61.6 115 30.4
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 5.3e-08 61.6 139 30.2
arahy.Tifrunner.gnm1.ann1.QTZM33 Arachis hypogaea HOM05D004554 ORTHO05D005360 5.9e-07 58.2 41 70.7


User provided reference genes

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