Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0127 Marchantia polymorpha HOM05D005866 ORTHO05D007078 2.4e-154 548.9 292 100.0
Pp3c20_9600 Physcomitrium patens HOM05D005866 ORTHO05D007078 8.9e-69 264.6 231 61.9
Pp3c23_6870 Physcomitrium patens HOM05D005866 ORTHO05D007078 3.0e-64 249.6 234 62.0
SEGI_22580 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 1.0e-48 198.0 227 48.0
Mapoly0004s0086 Marchantia polymorpha HOM05D005866 ORTHO05D007078 1.6e-25 120.9 232 38.4
AagrBONN_evm.TU.Sc2ySwM_117.2545 Anthoceros agrestis HOM05D005866 ORTHO05D007078 6.0e-25 119.0 264 33.3
Pp3c5_19930 Physcomitrium patens HOM05D005866 ORTHO05D007078 1.1e-23 114.8 262 35.1
SMO143G0029 Selaginella moellendorffii HOM05D001879 ORTHO05D007648 2.4e-21 107.1 226 34.1
Potri.006G096700 Populus trichocarpa HOM05D005866 ORTHO05D007078 4.9e-19 99.4 213 28.6
Psat3g131120 Pisum sativum HOM05D005866 ORTHO05D007078 1.6e-17 94.4 218 29.8
Ca_07614_v3 Cicer arietinum L. HOM05D005866 ORTHO05D007078 2.1e-17 94.0 234 27.8
TPR.G1580 Trifolium pratense HOM05D005866 ORTHO05D007078 2.7e-17 93.6 224 29.5
Aa31LG3G1580 Aethionema arabicum HOM05D005866 ORTHO05D007078 3.5e-17 93.2 246 28.5
Glyma.07G145800 Glycine max HOM05D005866 ORTHO05D007078 4.6e-17 92.8 216 29.2
Lj1g0011685 Lotus japonicus HOM05D005866 ORTHO05D007078 4.6e-17 92.8 248 28.2
BraA01t04319Z Brassica rapa HOM05D005866 ORTHO05D007078 7.9e-17 92.0 238 29.8
ECA247G0127 Erigeron canadensis HOM05D005866 ORTHO05D007078 7.9e-17 92.0 217 27.2
Glyma.18G197300 Glycine max HOM05D005866 ORTHO05D007078 2.3e-16 90.5 211 29.9
Phvul.008G107300 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 1.5e-15 87.8 234 29.1
arahy.Tifrunner.gnm1.ann1.LP8IIZ Arachis hypogaea HOM05D005866 ORTHO05D007078 9.7e-15 85.1 142 32.4
Medtr7g067000 Medicago truncatula HOM05D005866 ORTHO05D007078 9.7e-15 85.1 224 27.2
SEGI_33363 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 9.7e-15 85.1 203 31.5
MD04G1147400 Malus domestica HOM05D005866 ORTHO05D007078 1.6e-14 84.3 242 27.3
FAN14G3518 Fragaria x ananassa HOM05D005866 ORTHO05D007078 2.1e-14 84.0 226 29.6
arahy.Tifrunner.gnm1.ann1.Q1H550 Arachis hypogaea HOM05D005866 ORTHO05D007078 4.8e-14 82.8 142 31.7
Gohir.D01G215200 Gossypium hirsutum HOM05D005866 ORTHO05D007078 8.2e-14 82.0 196 30.1
Lj3g0009346 Lotus japonicus HOM05D005866 ORTHO05D007078 1.1e-13 81.6 166 30.1
ECA247G1841 Erigeron canadensis HOM05D005866 ORTHO05D007078 1.4e-13 81.3 133 30.8
Aqoxy1G00701 Aquilegia oxysepala HOM05D005866 ORTHO05D007078 1.8e-13 80.9 222 30.6
SEGI_17473 Sequoiadendron giganteum HOM05D005866 ORTHO05D007078 2.4e-13 80.5 165 32.1
VMungo1383G0141 Vigna mungo HOM05D005866 ORTHO05D007078 3.1e-13 80.1 244 28.3
FAN09G2814 Fragaria x ananassa HOM05D000012 ORTHO05D007078 5.3e-13 79.3 244 28.7
arahy.Tifrunner.gnm1.ann1.6JA19R Arachis hypogaea HOM05D005866 ORTHO05D007078 2.0e-12 77.4 119 31.9
AUR62042946 Chenopodium quinoa HOM05D005866 ORTHO05D007078 2.6e-12 77.0 208 27.9
AUR62025814 Chenopodium quinoa HOM05D005866 ORTHO05D007078 3.4e-12 76.6 208 27.4
Psat7g247600 Pisum sativum HOM05D005866 ORTHO05D007078 3.4e-12 76.6 125 33.6
Lalb_Chr07g0193301 Lupinus albus HOM05D005866 ORTHO05D007078 1.3e-11 74.7 118 31.4
BcaC09g48050 Brassica carinata HOM05D005866 ORTHO05D007078 3.8e-11 73.2 238 27.7
CiPaw.09G206400 Carya illinoinensis HOM05D005866 ORTHO05D007078 3.8e-11 73.2 205 26.8
FAN02G1355 Fragaria x ananassa HOM05D005866 ORTHO05D007078 3.8e-11 73.2 244 27.9
Lsat_1_v5_gn_9_36061 Lactuca sativa HOM05D005866 ORTHO05D007078 5.0e-11 72.8 237 26.2
arahy.Tifrunner.gnm1.ann1.QNAF0W Arachis hypogaea HOM05D005866 ORTHO05D007078 6.5e-11 72.4 176 30.1
vmacro08602 Vaccinium macrocarpon HOM05D005866 ORTHO05D007078 6.5e-11 72.4 244 25.8
AT3G09050 Arabidopsis thaliana HOM05D005866 ORTHO05D007078 8.5e-11 72.0 205 27.8
BcaC09g48006 Brassica carinata HOM05D005866 ORTHO05D007078 8.5e-11 72.0 215 27.0
CsaV3_4G026010 Cucumis sativus L. HOM05D005866 ORTHO05D007078 8.5e-11 72.0 236 23.7
BolC1t05477H Brassica oleracea HOM05D005866 ORTHO05D007078 1.1e-10 71.6 241 27.8
CSS0007949 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.1e-10 71.6 220 25.9
CSS0025068 Camellia sinensis var. sinensis HOM05D005866 ORTHO05D007078 1.1e-10 71.6 220 25.9
Carub.0003s0821 Capsella rubella HOM05D005866 ORTHO05D007078 1.4e-10 71.2 236 27.5
FvH4_6g11980 Fragaria vesca HOM05D005866 ORTHO05D007078 1.4e-10 71.2 225 27.6
FAN14G3397 Fragaria x ananassa HOM05D000012 ORTHO05D000567 1.4e-10 71.2 225 27.6
AL3G20110 Arabidopsis lyrata HOM05D005866 ORTHO05D007078 1.9e-10 70.9 236 26.3
arahy.Tifrunner.gnm1.ann1.F83RTD Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-10 70.9 145 25.5
arahy.Tifrunner.gnm1.ann1.T33YJ3 Arachis hypogaea HOM05D005866 ORTHO05D007078 1.9e-10 70.9 145 25.5
Lj2C80T14 Lonicera japonica HOM05D005866 ORTHO05D007078 3.2e-10 70.1 220 24.1
Sp3g07500 Schrenkiella parvula HOM05D005866 ORTHO05D007078 4.2e-10 69.7 233 27.0
Hund02698 Selenicereus undatus HOM05D005866 ORTHO05D007078 7.2e-10 68.9 227 28.6
Phvul.010G008600 Phaseolus vulgaris HOM05D005866 ORTHO05D007078 9.3e-10 68.6 190 28.9
Thhalv10021354m.g Eutrema salsugineum HOM05D005866 ORTHO05D007078 1.6e-09 67.8 214 25.7
Prupe.6G271100 Prunus persica HOM05D000012 ORTHO05D000567 2.7e-09 67.0 232 26.3
ClCG04G007220 Citrullus lanatus HOM05D005866 ORTHO05D007078 3.6e-09 66.6 224 22.8
Nitab4.5_0004912g0060 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.6e-09 66.2 234 26.1
CDE03G0505 Ceratophyllum demersum HOM05D005866 ORTHO05D007078 6.1e-09 65.9 233 23.2
VMungo0331G1214 Vigna mungo HOM05D005866 ORTHO05D007078 7.9e-09 65.5 189 28.0
BcaC09g48005 Brassica carinata HOM05D005866 ORTHO05D007078 1.3e-08 64.7 215 25.1
PGSC0003DMG400011090 Solanum tuberosum HOM05D005866 ORTHO05D007078 1.3e-08 64.7 241 27.8
Dinv35509 Davidia involucrata HOM05D005866 ORTHO05D007078 1.8e-08 64.3 256 25.0
CARHR083410 Cardamine hirsuta HOM05D005866 ORTHO05D007078 2.3e-08 63.9 244 27.0
Dinv14530 Davidia involucrata HOM05D005866 ORTHO05D007078 2.3e-08 63.9 256 25.0
Os01g0853000 Oryza sativa ssp. japonica HOM05D005866 ORTHO05D007078 5.1e-08 62.8 221 24.4
Sopen10g034540 Solanum pennellii HOM05D005866 ORTHO05D007078 5.1e-08 62.8 243 28.4
Sed0005881 Sechium edule HOM05D005866 ORTHO05D007078 6.7e-08 62.4 235 24.3
BcaC05g29639 Brassica carinata HOM05D005866 ORTHO05D007078 8.7e-08 62.0 203 26.6
MELO3C003227.2 Cucumis melo HOM05D005866 ORTHO05D007078 8.7e-08 62.0 220 23.2
PGR031G2542 Punica granatum HOM05D005866 ORTHO05D007078 1.1e-07 61.6 241 26.1
Sabra06G0074300 Salix brachista HOM05D005866 ORTHO05D007078 1.1e-07 61.6 239 22.6
FAN05G0379 Fragaria x ananassa HOM05D000012 ORTHO05D000567 2.5e-07 60.5 225 26.7
BolC5t34535H Brassica oleracea HOM05D005866 ORTHO05D007078 3.3e-07 60.1 231 26.0
Cpa.g.sc56.117 Carica papaya HOM05D005866 ORTHO05D007078 3.3e-07 60.1 219 25.6
C05p58830 Brassica napus HOM05D005866 ORTHO05D007078 4.3e-07 59.7 231 26.0
TWI74G1551 Tripterygium wilfordii HOM05D005866 ORTHO05D007078 4.3e-07 59.7 237 24.9
ATR0618G115 Amborella trichopoda HOM05D005866 ORTHO05D007078 9.7e-07 58.5 86 37.2
Thecc.05G021700 Theobroma cacao HOM05D005866 ORTHO05D007078 9.7e-07 58.5 242 24.4
Zm00001eb367320 Zea mays HOM05D005866 ORTHO05D007078 9.7e-07 58.5 238 24.4
A05p39790 Brassica napus HOM05D005866 ORTHO05D007078 2.2e-06 57.4 256 25.0
BraA05t22763Z Brassica rapa HOM05D005866 ORTHO05D007078 2.2e-06 57.4 256 25.0
TAR623G0986 Trochodendron aralioides HOM05D005866 ORTHO05D007078 3.7e-06 56.6 229 22.7
Nitab4.5_0000652g0170 Nicotiana tabacum HOM05D005866 ORTHO05D007078 4.8e-06 56.2 208 25.5
MSTRG.5595 Avicennia marina HOM05D005866 ORTHO05D007078 8.2e-06 55.5 249 25.3


User provided reference genes

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