Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0051 Marchantia polymorpha HOM05D003826 ORTHO05D004479 4.6e-121 438.0 228 100.0
SEGI_37389 Sequoiadendron giganteum HOM05D003826 ORTHO05D004479 2.6e-31 139.8 148 47.3
Pp3c1_28610 Physcomitrium patens HOM05D003826 ORTHO05D004479 4.4e-31 139.0 150 48.0
Psat1g214120 Pisum sativum HOM05D003826 ORTHO05D004479 8.3e-30 134.8 157 43.3
TPR.G9500 Trifolium pratense HOM05D003826 ORTHO05D004479 1.8e-29 133.7 159 42.8
arahy.Tifrunner.gnm1.ann1.8F9AHD Arachis hypogaea HOM05D003826 ORTHO05D004479 2.4e-29 133.3 150 45.3
CBR_g26273 Chara braunii HOM05D003826 ORTHO05D004479 2.4e-29 133.3 169 44.4
Medtr2g009600 Medicago truncatula HOM05D003826 ORTHO05D004479 2.4e-29 133.3 157 42.7
PGR042G0672 Punica granatum HOM05D003826 ORTHO05D004479 2.4e-29 133.3 154 42.2
Gorai.008G017400 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.2e-29 132.9 150 45.3
arahy.Tifrunner.gnm1.ann1.AL483W Arachis hypogaea HOM05D003826 ORTHO05D004479 4.1e-29 132.5 150 45.3
Migut.N01096 Erythranthe guttata HOM05D003826 ORTHO05D004479 7.0e-29 131.7 157 45.2
Nitab4.5_0008998g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.0e-29 131.7 155 42.6
CANSAT01G0714 Cannabis sativa HOM05D003826 ORTHO05D004479 9.2e-29 131.3 156 46.2
CARHR104200 Cardamine hirsuta HOM05D003826 ORTHO05D004479 9.2e-29 131.3 150 42.7
QL11p025207 Quercus lobata HOM05D003826 ORTHO05D004479 9.2e-29 131.3 150 44.0
TWI59G0852 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 9.2e-29 131.3 148 45.3
Manes.07G038200 Manihot esculenta HOM05D003826 ORTHO05D004479 1.2e-28 131.0 148 44.6
AL3G45800 Arabidopsis lyrata HOM05D003826 ORTHO05D004479 1.6e-28 130.6 150 42.7
Gohir.D12G017100 Gossypium hirsutum HOM05D003826 ORTHO05D004479 1.6e-28 130.6 153 45.1
BcaB02g11486 Brassica carinata HOM05D003826 ORTHO05D004479 2.0e-28 130.2 150 42.7
TPR.G2887 Trifolium pratense HOM05D003826 ORTHO05D004479 2.0e-28 130.2 148 44.6
TAR628G1674 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.0e-28 130.2 150 43.3
VMungo0540G1729 Vigna mungo HOM05D003826 ORTHO05D004479 2.0e-28 130.2 149 44.3
Atru.chr6.1261 Acer truncatum HOM05D003826 ORTHO05D004479 2.7e-28 129.8 150 44.7
Ciclev10029337m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.7e-28 129.8 150 44.0
Dinv24149 Davidia involucrata HOM05D003826 ORTHO05D004479 2.7e-28 129.8 150 44.0
Eucgr.G00988 Eucalyptus grandis HOM05D003826 ORTHO05D004479 2.7e-28 129.8 150 44.0
Glyma.13G256700 Glycine max HOM05D003826 ORTHO05D004479 2.7e-28 129.8 148 44.6
Hma1.2p1_0908F.1_g235485 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 2.7e-28 129.8 150 44.7
Rhsim05G0101900 Rhododendron simsii HOM05D003826 ORTHO05D004479 2.7e-28 129.8 151 43.0
TWI14G0912 Tripterygium wilfordii HOM05D003826 ORTHO05D004479 2.7e-28 129.8 148 43.9
TAR376G0575 Trochodendron aralioides HOM05D003826 ORTHO05D004479 2.7e-28 129.8 155 41.9
Cpa.g.sc20.1 Carica papaya HOM05D003826 ORTHO05D004479 3.5e-28 129.4 148 45.3
Gohir.A13G050900 Gossypium hirsutum HOM05D003826 ORTHO05D004479 3.5e-28 129.4 150 43.3
Gorai.013G055500 Gossypium raimondii HOM05D003826 ORTHO05D004479 3.5e-28 129.4 150 43.3
MD05G1047400 Malus domestica HOM05D003826 ORTHO05D004479 3.5e-28 129.4 148 45.3
Nn1g05569 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.5e-28 129.4 150 44.7
CANSAT54G1150 Cannabis sativa HOM05D003826 ORTHO05D004479 4.6e-28 129.0 148 45.3
Actinidia28031 Actinidia chinensis HOM05D003826 ORTHO05D004479 5.9e-28 128.6 151 43.7
Aa31LG8G12520 Aethionema arabicum HOM05D003826 ORTHO05D004479 5.9e-28 128.6 150 42.0
Migut.B00552 Erythranthe guttata HOM05D003826 ORTHO05D004479 5.9e-28 128.6 155 44.5
Sed0006788 Sechium edule HOM05D003826 ORTHO05D004479 5.9e-28 128.6 148 43.9
THA.LOC104807183 Tarenaya hassleriana HOM05D003826 ORTHO05D004479 5.9e-28 128.6 154 42.9
Thecc.02G129300 Theobroma cacao HOM05D003826 ORTHO05D004479 5.9e-28 128.6 150 43.3
GSVIVG01015652001 Vitis vinifera HOM05D003826 ORTHO05D004479 5.9e-28 128.6 150 43.3
BolC9t54449H Brassica oleracea HOM05D003826 ORTHO05D004479 7.8e-28 128.3 150 41.3
CSS0016886 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.8e-28 128.3 149 43.6
CSS0036052 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 7.8e-28 128.3 149 43.6
Carub.0003s2836 Capsella rubella HOM05D003826 ORTHO05D004479 7.8e-28 128.3 150 42.7
CsaV3_7G006880 Cucumis sativus L. HOM05D003826 ORTHO05D004479 7.8e-28 128.3 148 44.6
Manes.12G126200 Manihot esculenta HOM05D003826 ORTHO05D004479 7.8e-28 128.3 164 41.5
Mapoly0042s0019 Marchantia polymorpha HOM05D003826 ORTHO05D004479 7.8e-28 128.3 148 44.6
Nitab4.5_0011038g0020 Nicotiana tabacum HOM05D003826 ORTHO05D004479 7.8e-28 128.3 150 43.3
SMO271G0099 Selaginella moellendorffii HOM05D003826 ORTHO05D004479 7.8e-28 128.3 148 45.3
MSTRG.27816 Avicennia marina HOM05D003826 ORTHO05D004479 1.0e-27 127.9 150 44.0
A09p13020 Brassica napus HOM05D003826 ORTHO05D004479 1.0e-27 127.9 150 41.3
BraA09t36947Z Brassica rapa HOM05D003826 ORTHO05D004479 1.0e-27 127.9 150 41.3
CiPaw.05G029600 Carya illinoinensis HOM05D003826 ORTHO05D004479 1.0e-27 127.9 148 43.9
Glyma.07G181900 Glycine max HOM05D003826 ORTHO05D004479 1.0e-27 127.9 148 43.2
Psat7g101120 Pisum sativum HOM05D003826 ORTHO05D004479 1.0e-27 127.9 148 44.6
Atru.chr6.1269 Acer truncatum HOM05D003826 ORTHO05D004479 1.3e-27 127.5 150 44.0
Duzib052G0856 Durio zibethinus HOM05D003826 ORTHO05D004479 1.3e-27 127.5 150 43.3
Oeu042406.1 Olea europaea HOM05D003826 ORTHO05D004479 1.3e-27 127.5 155 43.2
Potri.017G043900 Populus trichocarpa HOM05D003826 ORTHO05D004479 1.3e-27 127.5 174 39.1
PGSC0003DMG400033580 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.3e-27 127.5 150 43.3
BcaC04g22775 Brassica carinata HOM05D003826 ORTHO05D004479 1.7e-27 127.1 150 41.3
C09p15420 Brassica napus HOM05D003826 ORTHO05D004479 1.7e-27 127.1 150 41.3
Nitab4.5_0002017g0010 Nicotiana tabacum HOM05D003826 ORTHO05D004479 1.7e-27 127.1 155 41.9
RcHm_v2.0_Chr6g0271011 Rosa chinensis HOM05D003826 ORTHO05D004479 1.7e-27 127.1 148 44.6
PGSC0003DMG400031403 Solanum tuberosum HOM05D003826 ORTHO05D004479 1.7e-27 127.1 148 43.2
Ca_00163_v3 Cicer arietinum L. HOM05D003826 ORTHO05D004479 2.3e-27 126.7 148 43.9
Potri.017G043700 Populus trichocarpa HOM05D003826 ORTHO05D004479 2.3e-27 126.7 148 42.6
Solyc01g105970.3 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.3e-27 126.7 150 43.3
Sopen01g048350 Solanum pennellii HOM05D003826 ORTHO05D004479 2.3e-27 126.7 150 43.3
Cfa005734 Carpinus fangiana HOM05D003826 ORTHO05D004479 2.9e-27 126.3 148 43.2
Thhalv10022868m.g Eutrema salsugineum HOM05D003826 ORTHO05D004479 2.9e-27 126.3 150 41.3
Lj6g0003535 Lotus japonicus HOM05D003826 ORTHO05D004479 2.9e-27 126.3 152 44.1
Manes.10G098600 Manihot esculenta HOM05D003826 ORTHO05D004479 2.9e-27 126.3 152 44.1
Aqoxy6G00874 Aquilegia oxysepala HOM05D003826 ORTHO05D004479 3.9e-27 125.9 150 42.7
CSS0050337 Camellia sinensis var. sinensis HOM05D003826 ORTHO05D004479 3.9e-27 125.9 139 45.3
ClCG09G016080 Citrullus lanatus HOM05D003826 ORTHO05D004479 3.9e-27 125.9 148 43.2
HanXRQChr08g0227191 Helianthus annuus HOM05D003826 ORTHO05D004479 3.9e-27 125.9 157 42.7
Haze_10523 Corylus avellana HOM05D003826 ORTHO05D004479 5.0e-27 125.6 148 43.2
FvH4_1g19640 Fragaria vesca HOM05D003826 ORTHO05D004479 5.0e-27 125.6 144 47.2
FAN19G1458 Fragaria x ananassa HOM05D003826 ORTHO05D004479 5.0e-27 125.6 144 47.2
Sp3g27460 Schrenkiella parvula HOM05D003826 ORTHO05D004479 5.0e-27 125.6 150 41.3
AagrBONN_evm.TU.Sc2ySwM_362.1195 Anthoceros agrestis HOM05D003826 ORTHO05D004479 6.6e-27 125.2 148 43.9
PSO541G0595 Papaver somniferum HOM05D003826 ORTHO05D004479 6.6e-27 125.2 150 43.3
Phvul.006G202000 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 6.6e-27 125.2 148 43.2
CAN.G997.2 Capsicum annuum HOM05D003826 ORTHO05D004479 8.6e-27 124.8 150 42.0
Sed0018824 Sechium edule HOM05D003826 ORTHO05D004479 8.6e-27 124.8 155 42.6
CDE04G3107 Ceratophyllum demersum HOM05D003826 ORTHO05D004479 1.1e-26 124.4 154 41.6
Cc07_g14100 Coffea canephora HOM05D003826 ORTHO05D004479 1.1e-26 124.4 151 44.4
FvH4_2g11710 Fragaria vesca HOM05D003826 ORTHO05D004479 1.1e-26 124.4 148 43.2
FAN24G2578 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.1e-26 124.4 148 43.2
Lalb_Chr16g0382941 Lupinus albus HOM05D003826 ORTHO05D004479 1.1e-26 124.4 162 41.4
Prupe.8G069800 Prunus persica HOM05D003826 ORTHO05D004479 1.1e-26 124.4 148 42.6
vmacro19957 Vaccinium macrocarpon HOM05D003826 ORTHO05D004479 1.1e-26 124.4 151 42.4
Cc02_g20920 Coffea canephora HOM05D003826 ORTHO05D004479 1.5e-26 124.0 150 42.7
FAN26G3235 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.5e-26 124.0 164 42.7
Lj5A230G39 Lonicera japonica HOM05D003826 ORTHO05D004479 1.5e-26 124.0 139 45.3
Medtr4g093560 Medicago truncatula HOM05D003826 ORTHO05D004479 1.5e-26 124.0 148 42.6
Os11g0434000 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.5e-26 124.0 155 45.2
Peaxi162Scf00003g03230 Petunia axillaris HOM05D003826 ORTHO05D004479 1.5e-26 124.0 155 42.6
MSTRG.20281 Avicennia marina HOM05D003826 ORTHO05D004479 2.5e-26 123.2 156 40.4
ECA236G1467 Erigeron canadensis HOM05D003826 ORTHO05D000778 2.5e-26 123.2 150 43.3
Lalb_Chr05g0216361 Lupinus albus HOM05D003826 ORTHO05D004479 2.5e-26 123.2 148 44.6
Phvul.002G212900 Phaseolus vulgaris HOM05D003826 ORTHO05D004479 2.5e-26 123.2 155 40.6
FAN23G0964 Fragaria x ananassa HOM05D003826 ORTHO05D004479 3.3e-26 122.9 144 46.5
Lj4g0024713 Lotus japonicus HOM05D003826 ORTHO05D004479 3.3e-26 122.9 154 40.9
Mapoly0032s0046 Marchantia polymorpha HOM05D003826 ORTHO05D004479 3.3e-26 122.9 148 44.6
DCAR_003601 Daucus carota HOM05D003826 ORTHO05D004479 5.6e-26 122.1 138 44.9
RcHm_v2.0_Chr2g0111211 Rosa chinensis HOM05D003826 ORTHO05D004479 7.3e-26 121.7 160 43.8
Cfa006882 Carpinus fangiana HOM05D003826 ORTHO05D004479 9.5e-26 121.3 143 44.8
Sabra17G0029800 Salix brachista HOM05D003826 ORTHO05D004479 9.5e-26 121.3 148 41.9
arahy.Tifrunner.gnm1.ann1.8NDV1J Arachis hypogaea HOM05D003826 ORTHO05D004479 1.2e-25 120.9 148 43.2
MBI16_g12461_MAGBIO Magnolia biondii HOM05D003826 ORTHO05D004479 1.2e-25 120.9 150 42.7
unitig_46.g18833 Utricularia gibba HOM05D003826 ORTHO05D004479 1.2e-25 120.9 150 42.7
arahy.Tifrunner.gnm1.ann1.JLXM4S Arachis hypogaea HOM05D003826 ORTHO05D004479 1.6e-25 120.6 150 42.7
arahy.Tifrunner.gnm1.ann1.QQ8XF2 Arachis hypogaea HOM05D003826 ORTHO05D004479 1.6e-25 120.6 150 42.7
Haze_03870 Corylus avellana HOM05D003826 ORTHO05D004479 1.6e-25 120.6 163 39.3
Os03g0737400 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 1.6e-25 120.6 148 42.6
Zm00001eb215290 Zea mays HOM05D003826 ORTHO05D004479 1.6e-25 120.6 148 42.6
EL10Ac9g22073 Beta vulgaris HOM05D003826 ORTHO05D004479 2.1e-25 120.2 154 40.3
MD01G1039300 Malus domestica HOM05D003826 ORTHO05D004479 2.1e-25 120.2 154 42.9
CiPaw.07G047500 Carya illinoinensis HOM05D003826 ORTHO05D004479 2.8e-25 119.8 150 44.0
AUR62003663 Chenopodium quinoa HOM05D003826 ORTHO05D004479 2.8e-25 119.8 155 43.2
unitig_37.g12793 Utricularia gibba HOM05D003826 ORTHO05D004479 2.8e-25 119.8 155 38.1
MELO3C018606.2 Cucumis melo HOM05D003826 ORTHO05D004479 4.7e-25 119.0 150 43.3
Sc18g0007060 Simmondsia chinensis HOM05D003826 ORTHO05D004479 4.7e-25 119.0 154 40.3
Atru.chr3.1247 Acer truncatum HOM05D003826 ORTHO05D004479 6.1e-25 118.6 150 44.0
arahy.Tifrunner.gnm1.ann1.MWC9N2 Arachis hypogaea HOM05D001561 ORTHO05D001715 8.0e-25 118.2 148 43.2
Prupe.6G201600 Prunus persica HOM05D003826 ORTHO05D004479 1.0e-24 117.9 156 41.0
Ah.03g139970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.4e-24 117.5 144 43.1
FAN28G0881 Fragaria x ananassa HOM05D003826 ORTHO05D004479 1.8e-24 117.1 152 43.4
Thecc.01G090400 Theobroma cacao HOM05D003826 ORTHO05D004479 1.8e-24 117.1 148 41.2
Cpa.g.sc55.25 Carica papaya HOM05D003826 ORTHO05D004479 2.3e-24 116.7 156 39.1
Duzib147G0892 Durio zibethinus HOM05D003826 ORTHO05D004479 3.1e-24 116.3 148 40.5
Dinv13602 Davidia involucrata HOM05D003826 ORTHO05D004479 4.0e-24 115.9 182 37.4
PGR102G1409 Punica granatum HOM05D003826 ORTHO05D004479 4.0e-24 115.9 154 42.2
Os03g0737300 Oryza sativa ssp. japonica HOM05D003826 ORTHO05D004479 5.8e-23 112.1 156 41.7
HPP92_016899 Vanilla planifolia HOM05D003826 ORTHO05D004479 7.5e-23 111.7 148 40.5
Hma1.2p1_1058F.1_g252870 Hydrangea macrophylla HOM05D003826 ORTHO05D004479 3.7e-22 109.4 163 37.4
Lj5A230G40 Lonicera japonica HOM05D003826 ORTHO05D004479 8.3e-22 108.2 165 38.2
AT2G14110 Arabidopsis thaliana HOM05D003826 ORTHO05D004479 1.1e-21 107.8 128 40.6
Lsat_1_v5_gn_7_82781 Lactuca sativa HOM05D003826 ORTHO05D004479 2.7e-20 103.2 150 38.7
SGA_v2.0_scaffold83G26375 Striga asiatica HOM05D003826 ORTHO05D004479 6.0e-20 102.1 129 40.3
COL.COLO4_32389 Corchorus olitorius HOM05D003826 ORTHO05D004479 5.0e-19 99.0 128 40.6
Peaxi162Scf00299g00634 Petunia axillaris HOM05D003826 ORTHO05D004479 2.5e-18 96.7 150 35.3
Nitab4.5_0002095g0060 Nicotiana tabacum HOM05D003826 ORTHO05D004479 3.6e-17 92.8 123 41.5
Hund16529 Selenicereus undatus HOM05D003826 ORTHO05D004479 3.6e-17 92.8 120 42.5
GSVIVG01015647001 Vitis vinifera HOM05D003826 ORTHO05D004479 8.9e-16 88.2 121 42.1
ATR0767G074 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.5e-15 87.4 112 42.9
RhsimUnG0154900 Rhododendron simsii HOM05D003826 ORTHO05D004479 5.8e-15 85.5 151 33.1
AUR62017972 Chenopodium quinoa HOM05D003826 ORTHO05D004479 7.5e-15 85.1 98 46.9
SalBow6G1284 Salvia bowleyana HOM05D003826 ORTHO05D004479 7.5e-15 85.1 126 42.1
Hund00378 Selenicereus undatus HOM05D003826 ORTHO05D004479 1.7e-14 84.0 113 40.7
Glyma.15G058200 Glycine max HOM05D003826 ORTHO05D004479 4.9e-14 82.4 140 37.1
ATR0767G082 Amborella trichopoda HOM05D003826 ORTHO05D004479 1.4e-13 80.9 116 37.9
SalBow8G4107 Salvia bowleyana HOM05D003826 ORTHO05D004479 1.6e-12 77.4 150 32.7
Ah.01g023970 Amaranthus hybridus HOM05D003826 ORTHO05D004479 1.5e-10 70.9 149 29.5
AUR62012887 Chenopodium quinoa HOM05D003826 ORTHO05D004479 1.9e-10 70.5 145 30.3
AUR62027111 Chenopodium quinoa HOM05D003826 ORTHO05D004479 5.6e-10 68.9 145 30.3
Lalb_Chr18g0060401 Lupinus albus HOM05D003826 ORTHO05D004479 2.1e-09 67.0 150 31.3
VMungo0251G2759 Vigna mungo HOM05D003826 ORTHO05D004479 8.1e-09 65.1 82 39.0
Ciclev10026755m.g Citrus clementina HOM05D003826 ORTHO05D004479 2.3e-08 63.5 84 40.5
GSVIVG01015646001 Vitis vinifera HOM05D003826 ORTHO05D004479 2.3e-08 63.5 105 37.1
Nn5g29884 Nelumbo nucifera HOM05D003826 ORTHO05D004479 3.1e-08 63.2 90 38.9
Solyc10g047310.1 Solanum lycopersicum HOM05D003826 ORTHO05D004479 2.0e-07 60.5 82 40.2
MD10G1054300 Malus domestica HOM05D003826 ORTHO05D004479 2.9e-06 56.6 63 41.3


User provided reference genes

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