Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0049 Marchantia polymorpha HOM05D006192 ORTHO05D008003 2.2e-285 984.9 492 100.0
Pp3c10_9630 Physcomitrium patens HOM05D006192 ORTHO05D008003 3.2e-204 715.3 395 85.1
Os05g0387200 Oryza sativa ssp. japonica HOM05D006192 ORTHO05D008003 2.9e-197 692.2 421 78.1
PGSC0003DMG400019063 Solanum tuberosum HOM05D006192 ORTHO05D008003 1.1e-196 690.3 439 74.3
Sopen08g018650 Solanum pennellii HOM05D006192 ORTHO05D008003 1.4e-196 689.9 439 74.3
Sed0014899 Sechium edule HOM05D006192 ORTHO05D008003 1.9e-196 689.5 423 76.4
SMO239G0161 Selaginella moellendorffii HOM05D006192 ORTHO05D008003 2.5e-196 689.1 423 77.8
Peaxi162Scf00327g00612 Petunia axillaris HOM05D006192 ORTHO05D008003 5.5e-196 688.0 424 76.7
Nitab4.5_0002829g0050 Nicotiana tabacum HOM05D006192 ORTHO05D008003 9.4e-196 687.2 439 74.3
Nitab4.5_0005436g0010 Nicotiana tabacum HOM05D006192 ORTHO05D008003 9.4e-196 687.2 396 80.3
THA.LOC104818573 Tarenaya hassleriana HOM05D006192 ORTHO05D008003 1.6e-195 686.4 415 78.1
MELO3C016873.2 Cucumis melo HOM05D006192 ORTHO05D008003 2.1e-195 686.0 458 72.3
Solyc08g063080.3 Solanum lycopersicum HOM05D006192 ORTHO05D008003 2.1e-195 686.0 438 74.0
Potri.006G228000 Populus trichocarpa HOM05D006192 ORTHO05D008003 2.7e-195 685.6 422 77.5
Prupe.1G411000 Prunus persica HOM05D006192 ORTHO05D008003 2.7e-195 685.6 412 77.9
MD15G1058400 Malus domestica HOM05D006192 ORTHO05D008003 3.6e-195 685.3 415 78.6
ClCG05G017890 Citrullus lanatus HOM05D006192 ORTHO05D008003 2.3e-194 682.6 423 76.8
Manes.03G048700 Manihot esculenta HOM05D006192 ORTHO05D008003 3.0e-194 682.2 422 77.3
Ciclev10008149m.g Citrus clementina HOM05D006192 ORTHO05D008003 6.7e-194 681.0 481 70.5
Sp7g30790 Schrenkiella parvula HOM05D006192 ORTHO05D008003 6.7e-194 681.0 415 77.8
Eucgr.C00658 Eucalyptus grandis HOM05D006192 ORTHO05D008003 1.5e-193 679.9 422 76.1
CANSAT25G1130 Cannabis sativa HOM05D006192 ORTHO05D008003 2.0e-193 679.5 413 78.7
Lalb_Chr20g0110241 Lupinus albus HOM05D006192 ORTHO05D008003 2.0e-193 679.5 419 77.6
PSO339G5117 Papaver somniferum HOM05D006192 ORTHO05D008003 2.0e-193 679.5 412 78.4
Zm00001eb347070 Zea mays HOM05D006192 ORTHO05D008003 2.0e-193 679.5 408 77.9
DCAR_000802 Daucus carota HOM05D006192 ORTHO05D008003 3.3e-193 678.7 412 76.9
PGR031G3391 Punica granatum HOM05D006192 ORTHO05D008003 4.3e-193 678.3 420 76.4
AT4G33030 Arabidopsis thaliana HOM05D006192 ORTHO05D008003 5.7e-193 677.9 417 76.5
AagrBONN_evm.TU.Sc2ySwM_368.1072 Anthoceros agrestis HOM05D006192 ORTHO05D008003 7.4e-193 677.6 391 82.1
CsaV3_4G035660 Cucumis sativus L. HOM05D006192 ORTHO05D008003 7.4e-193 677.6 485 68.2
FAN20G2998 Fragaria x ananassa HOM05D006192 ORTHO05D008003 7.4e-193 677.6 482 69.9
PSO384G1492 Papaver somniferum HOM05D006192 ORTHO05D008003 7.4e-193 677.6 476 70.2
Dinv27994 Davidia involucrata HOM05D006192 ORTHO05D008003 9.7e-193 677.2 412 77.4
FAN27G0797 Fragaria x ananassa HOM05D006192 ORTHO05D008003 9.7e-193 677.2 482 69.9
Glyma.03G131100 Glycine max HOM05D006192 ORTHO05D008003 9.7e-193 677.2 424 76.7
FAN15G2167 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-192 676.8 482 70.1
FAN24G0058 Fragaria x ananassa HOM05D006192 ORTHO05D008003 1.3e-192 676.8 482 69.9
AUR62039119 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.2e-192 676.0 423 75.7
AUR62043945 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.2e-192 676.0 423 75.7
FvH4_2g31750 Fragaria vesca HOM05D006192 ORTHO05D008003 2.2e-192 676.0 482 69.7
AUR62009135 Chenopodium quinoa HOM05D006192 ORTHO05D008003 2.8e-192 675.6 423 75.4
Migut.A00129 Erythranthe guttata HOM05D006192 ORTHO05D008003 2.8e-192 675.6 397 78.8
Lsat_1_v5_gn_3_23900 Lactuca sativa HOM05D006192 ORTHO05D008003 2.8e-192 675.6 417 75.8
AL7G18640 Arabidopsis lyrata HOM05D006192 ORTHO05D008003 3.7e-192 675.2 417 76.0
arahy.Tifrunner.gnm1.ann1.S5W95P Arachis hypogaea HOM05D006192 ORTHO05D008003 3.7e-192 675.2 409 78.2
CARHR241040 Cardamine hirsuta HOM05D006192 ORTHO05D008003 3.7e-192 675.2 417 76.0
Cfa017964 Carpinus fangiana HOM05D006192 ORTHO05D008003 3.7e-192 675.2 412 77.4
Rhsim07G0125300 Rhododendron simsii HOM05D006192 ORTHO05D008003 3.7e-192 675.2 422 75.8
Ah.11g044810 Amaranthus hybridus HOM05D006192 ORTHO05D008003 4.8e-192 674.9 423 76.1
TWI34G1683 Tripterygium wilfordii HOM05D006192 ORTHO05D008003 4.8e-192 674.9 410 77.3
Haze_18173 Corylus avellana HOM05D006192 ORTHO05D008003 8.2e-192 674.1 412 77.2
Dinv22891 Davidia involucrata HOM05D006192 ORTHO05D008003 8.2e-192 674.1 394 79.7
RcHm_v2.0_Chr6g0311071 Rosa chinensis HOM05D006192 ORTHO05D008003 8.2e-192 674.1 482 69.7
Cc08_g10700 Coffea canephora HOM05D006192 ORTHO05D008003 1.1e-191 673.7 412 77.7
Glyma.19G133100 Glycine max HOM05D006192 ORTHO05D008003 1.1e-191 673.7 417 77.2
SalBow5G1678 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.1e-191 673.7 482 68.7
EL10Ac2g03859 Beta vulgaris HOM05D006192 ORTHO05D008003 1.4e-191 673.3 404 77.7
SalBow4G2073 Salvia bowleyana HOM05D006192 ORTHO05D008003 1.4e-191 673.3 482 68.7
arahy.Tifrunner.gnm1.ann1.44XN4P Arachis hypogaea HOM05D006192 ORTHO05D008003 1.8e-191 672.9 409 78.5
MSTRG.25952 Avicennia marina HOM05D006192 ORTHO05D008003 1.8e-191 672.9 402 78.6
CSS0041370 Camellia sinensis var. sinensis HOM05D006192 ORTHO05D008003 1.8e-191 672.9 420 76.0
Carub.0007s0745 Capsella rubella HOM05D006192 ORTHO05D008003 3.1e-191 672.2 472 69.9
CAN.G9.23 Capsicum annuum HOM05D006192 ORTHO05D008003 3.1e-191 672.2 493 66.9
C01p05650 Brassica napus HOM05D006192 ORTHO05D008003 4.1e-191 671.8 417 76.3
BolC1t00544H Brassica oleracea HOM05D006192 ORTHO05D008003 4.1e-191 671.8 417 76.3
Sc01g0008030 Simmondsia chinensis HOM05D006192 ORTHO05D008003 4.1e-191 671.8 417 76.0
Gorai.009G044500 Gossypium raimondii HOM05D006192 ORTHO05D008003 5.3e-191 671.4 394 79.2
Oeu003988.1 Olea europaea HOM05D006192 ORTHO05D008003 5.3e-191 671.4 419 76.6
VMungo1383G3565 Vigna mungo HOM05D006192 ORTHO05D008003 5.3e-191 671.4 416 76.9
ECA246G2418 Erigeron canadensis HOM05D006192 ORTHO05D008003 6.9e-191 671.0 417 76.0
QL02p001073 Quercus lobata HOM05D006192 ORTHO05D008003 6.9e-191 671.0 420 75.7
Oeu009349.1 Olea europaea HOM05D006192 ORTHO05D008003 9.1e-191 670.6 418 75.8
CBR_g23789 Chara braunii HOM05D006192 ORTHO05D008003 1.2e-190 670.2 421 75.1
Gohir.A05G041700 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.2e-190 670.2 405 77.5
A03p61760 Brassica napus HOM05D006192 ORTHO05D008003 1.5e-190 669.8 396 79.3
Hund19447 Selenicereus undatus HOM05D006192 ORTHO05D008003 1.5e-190 669.8 403 77.7
Thhalv10025085m.g Eutrema salsugineum HOM05D006192 ORTHO05D008003 2.0e-190 669.5 477 69.0
Phvul.001G127100 Phaseolus vulgaris HOM05D006192 ORTHO05D008003 2.0e-190 669.5 419 75.9
Actinidia30319 Actinidia chinensis HOM05D006192 ORTHO05D008003 2.6e-190 669.1 420 76.0
BraA01t00499Z Brassica rapa HOM05D006192 ORTHO05D008003 2.6e-190 669.1 391 79.8
BolC7t46390H Brassica oleracea HOM05D006192 ORTHO05D008003 3.4e-190 668.7 393 79.4
COL.COLO4_21071 Corchorus olitorius HOM05D006192 ORTHO05D008003 3.4e-190 668.7 420 76.2
SGA_v2.0_scaffold20G09220 Striga asiatica HOM05D006192 ORTHO05D008003 4.5e-190 668.3 395 78.0
BraA03t15213Z Brassica rapa HOM05D006192 ORTHO05D008003 5.9e-190 667.9 396 78.8
C07p59470 Brassica napus HOM05D006192 ORTHO05D008003 7.7e-190 667.5 396 78.5
HanXRQChr06g0173891 Helianthus annuus HOM05D006192 ORTHO05D008003 1.0e-189 667.2 417 75.5
Nn7g37295 Nelumbo nucifera HOM05D006192 ORTHO05D008003 1.0e-189 667.2 412 76.7
BcaC09g52100 Brassica carinata HOM05D006192 ORTHO05D008003 1.3e-189 666.8 391 79.3
Gohir.D05G043400 Gossypium hirsutum HOM05D006192 ORTHO05D008003 1.3e-189 666.8 422 74.9
Lj7A269G19 Lonicera japonica HOM05D006192 ORTHO05D008003 1.3e-189 666.8 412 75.7
A01p05160 Brassica napus HOM05D006192 ORTHO05D008003 1.7e-189 666.4 391 79.3
ATR0307G063 Amborella trichopoda HOM05D006192 ORTHO05D008003 1.4e-188 663.3 417 76.3
Duzib187G0943 Durio zibethinus HOM05D006192 ORTHO05D008003 2.5e-188 662.5 428 74.5
Ca_08416_v3 Cicer arietinum L. HOM05D006192 ORTHO05D008003 4.2e-188 661.8 391 78.3
Thecc.09G055000 Theobroma cacao HOM05D006192 ORTHO05D008003 7.2e-188 661.0 484 68.2
MBI16_g06012_MAGBIO Magnolia biondii HOM05D006192 ORTHO05D008003 9.4e-188 660.6 469 68.9
TPR.G32742 Trifolium pratense HOM05D006192 ORTHO05D008003 1.2e-187 660.2 476 68.5
Medtr7g090510 Medicago truncatula HOM05D006192 ORTHO05D008003 3.6e-187 658.7 391 78.0
Aa31LG4G11110 Aethionema arabicum HOM05D006192 ORTHO05D008003 7.9e-187 657.5 389 78.7
Lj1g0026013 Lotus japonicus HOM05D006192 ORTHO05D008003 2.3e-186 656.0 426 73.7
Psat3g076360 Pisum sativum HOM05D006192 ORTHO05D008003 6.7e-186 654.4 391 77.0
CiPaw.15G038100 Carya illinoinensis HOM05D006192 ORTHO05D008003 1.5e-185 653.3 485 67.4
Sabra06G0176500 Salix brachista HOM05D006192 ORTHO05D008003 1.3e-184 650.2 449 70.4
HPP92_006663 Vanilla planifolia HOM05D006192 ORTHO05D008003 7.0e-175 617.8 374 76.7
BcaNung02151 Brassica carinata HOM05D006192 ORTHO05D008003 9.4e-172 607.4 396 73.5
Cre16.g656400 Chlamydomonas reinhardtii HOM05D006192 ORTHO05D008003 1.8e-170 603.2 390 72.1
GSVIVG01035394001 Vitis vinifera HOM05D006192 ORTHO05D008003 3.3e-169 599.0 487 63.9
MCO15G376 Micromonas commoda HOM05D006192 ORTHO05D008003 1.8e-162 576.6 388 67.3
PRCOL_00003517 Prasinoderma coloniale HOM05D006192 ORTHO05D008003 2.0e-161 573.2 404 65.3
unitig_748.g7527 Utricularia gibba HOM05D006192 ORTHO05D008003 2.4e-151 539.7 395 67.3
SalBow5G5187 Salvia bowleyana HOM05D006192 ORTHO05D008003 2.8e-147 526.2 344 72.7
TAR369G0638 Trochodendron aralioides HOM05D006192 ORTHO05D008003 8.9e-146 521.2 354 70.3
Atru.chr7.1090 Acer truncatum HOM05D006192 ORTHO05D008003 6.0e-142 508.4 286 83.9
Lj7A268T22 Lonicera japonica HOM05D006192 ORTHO05D008003 5.6e-140 501.9 286 82.2
SEGI_22284 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.9e-135 486.9 313 74.1
CDE02G3162 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 9.9e-121 438.0 263 76.0
SalBow8G2204 Salvia bowleyana HOM05D006192 ORTHO05D008003 9.0e-90 335.1 237 66.7
CDE04G0209 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 6.5e-88 328.9 213 72.8
CDE04G3367 Ceratophyllum demersum HOM05D006192 ORTHO05D008003 3.4e-73 280.0 171 76.6
SalBow8G3463 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.2e-55 220.3 195 58.5
SEGI_03729 Sequoiadendron giganteum HOM05D006192 ORTHO05D008003 1.2e-54 218.4 136 77.2
MD08G1063500 Malus domestica HOM05D006192 ORTHO05D008003 3.4e-52 210.3 130 74.6
SalBow8G1594 Salvia bowleyana HOM05D006192 ORTHO05D008003 3.4e-52 210.3 132 75.0
SalBow5G3520 Salvia bowleyana HOM05D000200 ORTHO05D000262 2.0e-41 174.5 138 67.4
SalBow4G3004 Salvia bowleyana HOM05D006192 ORTHO05D001699 3.6e-30 137.1 94 71.3
SalBow8G4783 Salvia bowleyana HOM05D006192 ORTHO05D358531 7.0e-26 122.9 105 58.1
Atru.chr7.1089 Acer truncatum HOM05D006192 ORTHO05D008003 8.1e-22 109.4 91 57.1
BcaC01g05298 Brassica carinata HOM05D006192 ORTHO05D091607 5.2e-13 80.1 59 64.4
Mapoly0068s0034 Marchantia polymorpha HOM05D000776 ORTHO05D001624 1.0e-08 65.9 284 27.5
Mapoly0065s0029 Marchantia polymorpha HOM05D000776 ORTHO05D001624 4.3e-07 60.5 138 31.2
Glyma.10G045800 Glycine max HOM05D000739 ORTHO05D001171 2.8e-06 57.8 358 21.5
SGA_v2.0_scaffold126G33852 Striga asiatica HOM05D000739 ORTHO05D001171 2.8e-06 57.8 378 22.0
Lj5g0008814 Lotus japonicus HOM05D000739 ORTHO05D001171 4.7e-06 57.0 349 21.5
Medtr1g067530 Medicago truncatula HOM05D000739 ORTHO05D001171 8.1e-06 56.2 344 21.8


User provided reference genes

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