Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0036 Marchantia polymorpha HOM05D003881 ORTHO05D004343 0.0e+00 1793.9 1077 100.0
AagrBONN_evm.TU.Sc2ySwM_344.1648 Anthoceros agrestis HOM05D003881 ORTHO05D004343 0.0e+00 1313.5 871 74.7
SMO143G0189 Selaginella moellendorffii HOM05D003881 ORTHO05D004343 0.0e+00 1302.7 881 72.8
Nn8g38678 Nelumbo nucifera HOM05D003881 ORTHO05D004343 0.0e+00 1258.4 880 69.2
TAR383G1047 Trochodendron aralioides HOM05D003881 ORTHO05D004343 0.0e+00 1248.4 880 68.8
CDE06G1176 Ceratophyllum demersum HOM05D003881 ORTHO05D004343 0.0e+00 1225.3 883 67.5
SEGI_24391 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 0.0e+00 1221.8 881 67.9
Aqoxy5G02361 Aquilegia oxysepala HOM05D003881 ORTHO05D004343 0.0e+00 1221.1 880 68.1
COL.COLO4_18111 Corchorus olitorius HOM05D003881 ORTHO05D004343 0.0e+00 1218.0 869 68.2
PSO135G0960 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1215.3 883 67.4
CSS0040077 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 0.0e+00 1213.0 880 67.6
MBI19_g11836_MAGBIO Magnolia biondii HOM05D003881 ORTHO05D004343 0.0e+00 1212.6 880 67.6
PSO724G0120 Papaver somniferum HOM05D003881 ORTHO05D004343 0.0e+00 1208.7 883 67.2
Gorai.001G015300 Gossypium raimondii HOM05D003881 ORTHO05D004343 0.0e+00 1208.4 869 67.7
CiPaw.03G207700 Carya illinoinensis HOM05D003881 ORTHO05D004343 0.0e+00 1207.6 872 68.0
Ciclev10007295m.g Citrus clementina HOM05D003881 ORTHO05D004343 0.0e+00 1207.2 869 67.5
MELO3C015512.2 Cucumis melo HOM05D003881 ORTHO05D004343 0.0e+00 1206.8 880 66.8
Gohir.D07G014500 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1206.4 869 67.5
Gohir.A07G014800 Gossypium hirsutum HOM05D003881 ORTHO05D004343 0.0e+00 1206.0 869 67.3
Sed0009854 Sechium edule HOM05D003881 ORTHO05D004343 0.0e+00 1204.5 880 66.7
CAN.G457.4 Capsicum annuum HOM05D003881 ORTHO05D004343 0.0e+00 1204.1 904 66.2
CsaV3_1G040850 Cucumis sativus L. HOM05D003881 ORTHO05D004343 0.0e+00 1203.7 880 66.6
Thecc.09G079000 Theobroma cacao HOM05D003881 ORTHO05D004343 0.0e+00 1203.7 868 68.0
Lj6g0005202 Lotus japonicus HOM05D003881 ORTHO05D004343 0.0e+00 1202.6 886 66.7
Dinv42377 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1202.2 875 67.7
HanXRQChr12g0354081 Helianthus annuus HOM05D003881 ORTHO05D004343 0.0e+00 1199.5 892 65.8
Glyma.15G176400 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1198.3 886 66.6
Glyma.09G068600 Glycine max HOM05D003881 ORTHO05D004343 0.0e+00 1198.0 881 67.0
Prupe.7G201100 Prunus persica HOM05D003881 ORTHO05D004343 0.0e+00 1196.4 880 66.5
arahy.Tifrunner.gnm1.ann1.13CNWC Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1196.0 884 67.4
Ca_26333_v3 Cicer arietinum L. HOM05D003881 ORTHO05D004343 0.0e+00 1196.0 881 67.1
Rhsim03G0228800 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1196.0 880 66.8
arahy.Tifrunner.gnm1.ann1.3W29E4 Arachis hypogaea HOM05D003881 ORTHO05D004343 0.0e+00 1194.1 900 66.4
Eucgr.C00824 Eucalyptus grandis HOM05D003881 ORTHO05D004343 0.0e+00 1194.1 876 66.1
Phvul.009G228100 Phaseolus vulgaris HOM05D003881 ORTHO05D004343 0.0e+00 1194.1 886 66.6
Medtr2g041420 Medicago truncatula HOM05D003881 ORTHO05D004343 0.0e+00 1192.9 881 67.0
FAN26G0375 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1192.6 880 66.0
Lalb_Chr11g0074291 Lupinus albus HOM05D003881 ORTHO05D004343 0.0e+00 1192.2 886 66.6
Psat1g133400 Pisum sativum HOM05D003881 ORTHO05D004343 0.0e+00 1192.2 881 66.5
THA.LOC104815327 Tarenaya hassleriana HOM05D003881 ORTHO05D004343 0.0e+00 1191.0 881 66.1
GSVIVG01015096001 Vitis vinifera HOM05D003881 ORTHO05D004343 0.0e+00 1191.0 880 66.6
FAN19G1850 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1190.6 880 66.0
CANSAT56G1084 Cannabis sativa HOM05D003881 ORTHO05D004343 0.0e+00 1187.6 886 66.0
Manes.16G096500 Manihot esculenta HOM05D003881 ORTHO05D004343 0.0e+00 1186.0 873 66.2
ClCG03G015190 Citrullus lanatus HOM05D003881 ORTHO05D004343 0.0e+00 1185.6 908 64.8
ECA232G2980 Erigeron canadensis HOM05D003881 ORTHO05D004343 0.0e+00 1185.6 890 65.2
Rhsim01G0044500 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1182.5 900 65.0
TWI34G0082 Tripterygium wilfordii HOM05D003881 ORTHO05D004343 0.0e+00 1180.6 886 65.3
PGR142G3183 Punica granatum HOM05D003881 ORTHO05D004343 0.0e+00 1179.9 864 66.7
ATR0598G033 Amborella trichopoda HOM05D003881 ORTHO05D004343 0.0e+00 1179.5 880 66.6
Atru.chr7.1693 Acer truncatum HOM05D003881 ORTHO05D004343 0.0e+00 1178.7 876 66.1
Lj7A685T51 Lonicera japonica HOM05D003881 ORTHO05D004343 0.0e+00 1177.5 916 63.6
FvH4_1g08430 Fragaria vesca HOM05D003881 ORTHO05D004343 0.0e+00 1175.2 880 65.1
FAN28G2111 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1174.5 880 64.9
FAN26G1433 Fragaria x ananassa HOM05D003881 ORTHO05D004343 0.0e+00 1173.7 920 63.2
AL3G43760 Arabidopsis lyrata HOM05D003881 ORTHO05D004343 0.0e+00 1171.0 881 65.4
Lsat_1_v5_gn_5_141221 Lactuca sativa HOM05D003881 ORTHO05D004343 0.0e+00 1170.6 916 63.2
Carub.0003s2725 Capsella rubella HOM05D003881 ORTHO05D004343 0.0e+00 1170.2 881 65.2
Cfa003017 Carpinus fangiana HOM05D003881 ORTHO05D004343 0.0e+00 1163.7 872 65.7
BcaB08g34515 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1161.7 881 64.4
Thhalv10002377m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 0.0e+00 1161.0 881 64.2
Aa31sc133G100 Aethionema arabicum HOM05D003881 ORTHO05D004343 0.0e+00 1160.2 914 63.6
Sp3g24670 Schrenkiella parvula HOM05D003881 ORTHO05D004343 0.0e+00 1159.4 881 64.4
Potri.006G143300 Populus trichocarpa HOM05D003881 ORTHO05D004343 0.0e+00 1156.0 880 64.8
MSTRG.26461 Avicennia marina HOM05D003881 ORTHO05D004343 0.0e+00 1154.4 914 63.0
Dinv25567 Davidia involucrata HOM05D003881 ORTHO05D004343 0.0e+00 1152.9 871 65.9
Sabra06G0112200 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1147.9 880 64.3
Sabra06G0113500 Salix brachista HOM05D003881 ORTHO05D004343 0.0e+00 1147.9 880 64.3
SGA_v2.0_scaffold21G09481 Striga asiatica HOM05D003881 ORTHO05D004343 0.0e+00 1147.1 920 62.9
DCAR_031930 Daucus carota HOM05D003881 ORTHO05D004343 0.0e+00 1144.4 893 63.8
Actinidia29923 Actinidia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1144.0 883 64.1
Sc14g0000600 Simmondsia chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1143.6 882 64.2
C03p55630 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1142.9 882 63.7
BolC3t17840H Brassica oleracea HOM05D003881 ORTHO05D004343 0.0e+00 1142.9 882 63.7
Haze_25994 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1142.9 900 63.8
A03p44780 Brassica napus HOM05D003881 ORTHO05D004343 0.0e+00 1141.3 882 63.6
BraA03t13613Z Brassica rapa HOM05D003881 ORTHO05D004343 0.0e+00 1141.3 882 63.6
MD02G1088500 Malus domestica HOM05D003881 ORTHO05D004343 0.0e+00 1140.6 880 63.9
RcHm_v2.0_Chr2g0094531 Rosa chinensis HOM05D003881 ORTHO05D004343 0.0e+00 1135.9 880 63.4
Duzib168G2095 Durio zibethinus HOM05D003881 ORTHO05D004343 0.0e+00 1135.2 869 64.8
Hund26018 Selenicereus undatus HOM05D003881 ORTHO05D004343 0.0e+00 1134.8 881 64.2
BcaC01g03143 Brassica carinata HOM05D003881 ORTHO05D004343 0.0e+00 1133.2 884 63.1
Rhsim01G0044300 Rhododendron simsii HOM05D003881 ORTHO05D004343 0.0e+00 1124.0 880 63.6
TPR.G28668 Trifolium pratense HOM05D003881 ORTHO05D004343 0.0e+00 1116.3 838 65.5
Oeu018066.1 Olea europaea HOM05D003881 ORTHO05D004343 0.0e+00 1115.5 946 60.0
Migut.L01552 Erythranthe guttata HOM05D003881 ORTHO05D004343 0.0e+00 1113.6 900 61.9
AUR62028984 Chenopodium quinoa HOM05D003881 ORTHO05D004343 0.0e+00 1111.3 881 62.1
Cc06_g12030 Coffea canephora HOM05D003881 ORTHO05D004343 0.0e+00 1111.3 893 62.0
Haze_25986 Corylus avellana HOM05D003881 ORTHO05D004343 0.0e+00 1109.7 900 62.6
QL11p000475 Quercus lobata HOM05D003881 ORTHO05D004343 0.0e+00 1108.2 977 58.2
Nitab4.5_0000343g0070 Nicotiana tabacum HOM05D003881 ORTHO05D004343 0.0e+00 1104.4 948 60.2
Ah.14g084990 Amaranthus hybridus HOM05D003881 ORTHO05D004343 0.0e+00 1086.6 881 61.4
Pp3c3_17140 Physcomitrium patens HOM05D003881 ORTHO05D004343 0.0e+00 1080.5 742 70.9
Duzib150G0508 Durio zibethinus HOM05D003881 ORTHO05D004343 1.5e-311 1073.2 869 62.3
EL10Ac8g19107 Beta vulgaris HOM05D003881 ORTHO05D004343 2.8e-309 1065.4 965 55.5
Oeu041279.1 Olea europaea HOM05D003881 ORTHO05D004343 2.3e-308 1062.4 894 57.9
vmacro06329 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 8.9e-308 1060.4 899 60.7
DCAR_024741 Daucus carota HOM05D003881 ORTHO05D004343 7.0e-305 1050.8 1060 53.5
AUR62025189 Chenopodium quinoa HOM05D003881 ORTHO05D004343 4.6e-304 1048.1 881 59.5
SalBow4G1287 Salvia bowleyana HOM05D003881 ORTHO05D004343 2.1e-301 1039.3 929 57.6
Nitab4.5_0001488g0030 Nicotiana tabacum HOM05D003881 ORTHO05D004343 6.6e-295 1017.7 788 64.3
Zm00001eb073540 Zea mays HOM05D003881 ORTHO05D004343 5.6e-294 1014.6 892 57.0
unitig_8.g3529 Utricularia gibba HOM05D003881 ORTHO05D004343 1.6e-261 906.7 879 54.7
Solyc07g041510.3 Solanum lycopersicum HOM05D003881 ORTHO05D004343 2.3e-255 886.3 692 63.6
Sopen07g027960 Solanum pennellii HOM05D003674 ORTHO05D004343 3.0e-255 885.9 690 63.6
TAR383G0903 Trochodendron aralioides HOM05D003881 ORTHO05D004343 5.2e-215 752.3 550 66.5
Peaxi162Scf00127g00019 Petunia axillaris HOM05D003881 ORTHO05D004343 3.1e-212 743.0 690 56.7
Cpa.g.sc28.63 Carica papaya HOM05D003881 ORTHO05D004343 3.5e-211 739.6 635 59.4
CARHR103800 Cardamine hirsuta HOM05D003881 ORTHO05D004343 5.2e-199 699.1 562 61.7
HPP92_007226 Vanilla planifolia HOM05D003881 ORTHO05D004343 1.8e-146 524.6 571 49.2
Os07g0476200 Oryza sativa ssp. japonica HOM05D003881 ORTHO05D004343 3.1e-143 513.8 456 55.9
TAR383G0300 Trochodendron aralioides HOM05D003881 ORTHO05D004343 3.1e-135 487.3 327 72.2
CARHR103810 Cardamine hirsuta HOM05D003881 ORTHO05D004343 7.2e-132 476.1 318 71.7
CBR_g74629 Chara braunii HOM05D003881 ORTHO05D004343 6.1e-131 473.0 370 61.1
SEGI_36108 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.3e-114 417.9 450 50.9
Peaxi162Scf00127g00018 Petunia axillaris HOM05D003881 ORTHO05D004343 1.0e-90 339.3 217 75.1
MCO14G023 Micromonas commoda HOM05D003881 ORTHO05D004343 8.9e-90 336.3 1017 27.0
Sopen07g021070 Solanum pennellii HOM05D003881 ORTHO05D004343 3.4e-89 334.3 214 75.7
Cre03.g189605 Chlamydomonas reinhardtii HOM05D003881 ORTHO05D004343 6.6e-85 320.1 1016 26.1
SHI23794 Sapria himalayana HOM05D003881 ORTHO05D004343 1.4e-79 302.4 322 49.7
QL01p053501 Quercus lobata HOM05D003881 ORTHO05D004343 9.2e-63 246.5 233 54.9
QL04p095684 Quercus lobata HOM05D003881 ORTHO05D004343 1.2e-62 246.1 311 45.7
QL03p010974 Quercus lobata HOM05D003881 ORTHO05D004343 5.6e-60 237.3 276 47.1
Psat4g185720 Pisum sativum HOM05D003881 ORTHO05D004343 1.2e-59 236.1 198 61.1
Zm00001eb329800 Zea mays HOM05D003881 ORTHO05D004343 2.6e-57 228.4 190 58.4
SEGI_33062 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 2.4e-50 205.3 145 64.8
CBR_g74627 Chara braunii HOM05D003881 ORTHO05D004343 8.7e-45 186.8 226 45.1
ATR0684G009 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.9e-44 185.7 375 35.7
QL10p021459 Quercus lobata HOM05D000176 ORTHO05D000106 4.8e-43 181.0 132 64.4
CSS0024068 Camellia sinensis var. sinensis HOM05D003881 ORTHO05D004343 2.0e-41 175.6 99 80.8
Thhalv10002929m.g Eutrema salsugineum HOM05D003881 ORTHO05D004343 6.0e-38 164.1 191 46.6
ATR0193G014 Amborella trichopoda HOM05D003881 ORTHO05D004343 3.0e-37 161.8 106 74.5
HPP92_012481 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.3e-36 157.9 147 56.5
MD15G1215900 Malus domestica HOM05D003881 ORTHO05D004343 4.0e-34 151.4 240 40.8
SEGI_35060 Sequoiadendron giganteum HOM05D000021 ORTHO05D000010 7.9e-30 137.1 121 54.5
ATR0193G031 Amborella trichopoda HOM05D003881 ORTHO05D004343 8.7e-29 133.7 108 57.4
Psat1g224080 Pisum sativum HOM05D003881 ORTHO05D004343 1.9e-28 132.5 89 67.4
SEGI_29160 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 7.4e-28 130.6 119 50.4
HPP92_026934 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.1e-27 129.0 258 32.9
Lsat_1_v5_gn_3_15640 Lactuca sativa HOM05D003881 ORTHO05D004343 1.4e-26 126.3 103 53.4
ATR0684G059 Amborella trichopoda HOM05D003881 ORTHO05D004343 7.6e-25 120.6 93 65.6
Actinidia38472 Actinidia chinensis HOM05D003881 ORTHO05D004343 6.1e-22 110.9 235 33.2
Hma1.2p1_0528F.1_g173040 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.5e-20 105.5 108 50.0
Hma1.2p1_0980F.1_g243635 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.5e-20 105.5 108 50.0
Hma1.2p1_1385F.1_g279633 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 2.5e-20 105.5 108 50.0
Psat0s7528g0040 Pisum sativum HOM05D003881 ORTHO05D004343 4.3e-20 104.8 149 40.9
Psat1g059560 Pisum sativum HOM05D003881 ORTHO05D004343 2.8e-19 102.1 149 40.3
HPP92_006853 Vanilla planifolia HOM05D003881 ORTHO05D004343 2.8e-19 102.1 69 71.0
HPP92_006870 Vanilla planifolia HOM05D003881 ORTHO05D004343 4.8e-19 101.3 69 71.0
Hma1.2p1_0508F.1_g168780 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 9.1e-18 97.1 66 66.7
Hma1.2p1_0430F.1_g151320 Hydrangea macrophylla HOM05D003881 ORTHO05D004343 5.9e-17 94.4 66 65.2
Rhsim03G0229000 Rhododendron simsii HOM05D003881 ORTHO05D004343 1.3e-16 93.2 84 63.1
SEGI_26438 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 3.8e-16 91.7 59 74.6
SEGI_39855 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 8.5e-16 90.5 59 74.6
HPP92_028483 Vanilla planifolia HOM05D003881 ORTHO05D004343 8.5e-16 90.5 71 57.7
SEGI_15507 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 1.1e-15 90.1 79 53.2
SEGI_11752 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 9.4e-15 87.0 141 43.3
SEGI_23032 Sequoiadendron giganteum HOM05D003881 ORTHO05D004343 6.1e-14 84.3 68 58.8
TPR.G10985 Trifolium pratense HOM05D003881 ORTHO05D004343 8.8e-13 80.5 47 85.1
Psat1g034120 Pisum sativum HOM05D003881 ORTHO05D004343 5.7e-12 77.8 86 51.2
ATR0193G048 Amborella trichopoda HOM05D003881 ORTHO05D004343 1.8e-10 72.8 105 41.9
vmacro22673 Vaccinium macrocarpon HOM05D003881 ORTHO05D004343 9.1e-10 70.5 83 51.8
CBR_g74625 Chara braunii HOM05D003881 ORTHO05D004343 1.2e-09 70.1 66 53.0
HPP92_012555 Vanilla planifolia HOM05D003881 ORTHO05D004343 3.4e-09 68.6 118 39.8
RcHm_v2.0_Chr5g0007121 Rosa chinensis HOM05D003881 ORTHO05D004343 2.5e-07 62.4 50 58.0


User provided reference genes

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