Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0010s0009 Marchantia polymorpha HOM05D005689 ORTHO05D007060 4.0e-78 294.7 144 100.0
Pp3c13_19460 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.5e-64 249.6 140 84.3
SEGI_29883 Sequoiadendron giganteum HOM05D005689 ORTHO05D007060 2.5e-64 248.8 140 81.4
Potri.009G136800 Populus trichocarpa HOM05D005689 ORTHO05D007060 9.5e-64 246.9 138 82.6
MSTRG.19983 Avicennia marina HOM05D005689 ORTHO05D007060 1.6e-63 246.1 138 82.6
Duzib132G1056 Durio zibethinus HOM05D005689 ORTHO05D007060 1.6e-63 246.1 138 82.6
Aqoxy6G02106 Aquilegia oxysepala HOM05D005689 ORTHO05D007060 2.1e-63 245.7 138 82.6
QL11p051049 Quercus lobata HOM05D005689 ORTHO05D007060 2.1e-63 245.7 139 82.0
Thecc.02G057800 Theobroma cacao HOM05D005689 ORTHO05D007060 2.1e-63 245.7 142 80.3
Atru.chr5.3380 Acer truncatum HOM05D005689 ORTHO05D007060 2.8e-63 245.4 138 82.6
AUR62010026 Chenopodium quinoa HOM05D005689 ORTHO05D007060 2.8e-63 245.4 140 82.1
AUR62013016 Chenopodium quinoa HOM05D005689 ORTHO05D007060 3.6e-63 245.0 140 81.4
CSS0016500 Camellia sinensis var. sinensis HOM05D005689 ORTHO05D007060 4.7e-63 244.6 138 81.9
CANSAT25G1424 Cannabis sativa HOM05D005689 ORTHO05D007060 4.7e-63 244.6 138 81.9
GSVIVG01024004001 Vitis vinifera HOM05D005689 ORTHO05D007060 4.7e-63 244.6 138 81.9
Migut.B00070 Erythranthe guttata HOM05D005689 ORTHO05D007060 6.1e-63 244.2 138 81.2
Eucgr.I01435 Eucalyptus grandis HOM05D005689 ORTHO05D007060 6.1e-63 244.2 138 81.9
Manes.04G071800 Manihot esculenta HOM05D005689 ORTHO05D007060 6.1e-63 244.2 138 81.2
TWI31G0315 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 6.1e-63 244.2 138 82.6
Actinidia20518 Actinidia chinensis HOM05D005689 ORTHO05D007060 8.0e-63 243.8 138 81.9
Cfa005260 Carpinus fangiana HOM05D005689 ORTHO05D007060 8.0e-63 243.8 138 81.9
Ciclev10029529m.g Citrus clementina HOM05D005689 ORTHO05D007060 8.0e-63 243.8 138 81.2
Cc09_g09830 Coffea canephora HOM05D005689 ORTHO05D007060 8.0e-63 243.8 138 81.2
Hund06443 Selenicereus undatus HOM05D005689 ORTHO05D007060 8.0e-63 243.8 140 80.7
Duzib248G0128 Durio zibethinus HOM05D005689 ORTHO05D007060 1.0e-62 243.4 138 81.9
Gohir.A03G205500 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.0e-62 243.4 138 81.2
Gohir.D02G226800 Gossypium hirsutum HOM05D005689 ORTHO05D007060 1.0e-62 243.4 138 81.2
Gorai.005G254700 Gossypium raimondii HOM05D005689 ORTHO05D007060 1.0e-62 243.4 138 81.2
PGR142G2796 Punica granatum HOM05D005689 ORTHO05D007060 1.0e-62 243.4 138 81.2
Dinv41928 Davidia involucrata HOM05D005689 ORTHO05D007060 1.4e-62 243.0 138 81.9
Prupe.8G167200 Prunus persica HOM05D005689 ORTHO05D007060 1.4e-62 243.0 138 81.2
vmacro02282 Vaccinium macrocarpon HOM05D005689 ORTHO05D007060 1.4e-62 243.0 138 81.2
MD05G1123300 Malus domestica HOM05D005689 ORTHO05D007060 1.8e-62 242.7 138 81.2
PSO675G8512 Papaver somniferum HOM05D005689 ORTHO05D007060 1.8e-62 242.7 140 81.4
Sc18g0006380 Simmondsia chinensis HOM05D005689 ORTHO05D007060 1.8e-62 242.7 140 80.0
CiPaw.05G083600 Carya illinoinensis HOM05D005689 ORTHO05D007060 2.3e-62 242.3 138 81.2
EL10Ac9g21356 Beta vulgaris HOM05D005689 ORTHO05D007060 3.0e-62 241.9 140 80.7
MBI12_g17551_MAGBIO Magnolia biondii HOM05D005689 ORTHO05D007060 3.0e-62 241.9 139 80.6
FAN24G0830 Fragaria x ananassa HOM05D005689 ORTHO05D007060 4.0e-62 241.5 138 79.7
Glyma.18G247400 Glycine max HOM05D005689 ORTHO05D007060 4.0e-62 241.5 138 81.2
PSO541G0653 Papaver somniferum HOM05D005689 ORTHO05D007060 4.0e-62 241.5 140 80.7
Ca_08042_v3 Cicer arietinum L. HOM05D005689 ORTHO05D007060 5.2e-62 241.1 142 78.9
Medtr7g081040 Medicago truncatula HOM05D005689 ORTHO05D007060 5.2e-62 241.1 138 81.2
Peaxi162Scf00362g00537 Petunia axillaris HOM05D005689 ORTHO05D007060 5.2e-62 241.1 138 80.4
FvH4_2g15500 Fragaria vesca HOM05D005689 ORTHO05D007060 6.8e-62 240.7 138 79.7
FAN15G3340 Fragaria x ananassa HOM05D005689 ORTHO05D007060 6.8e-62 240.7 138 79.7
Hma1.2p1_0032F.1_g019300 Hydrangea macrophylla HOM05D005689 ORTHO05D007060 6.8e-62 240.7 138 81.2
VMungo1383G2472 Vigna mungo HOM05D005689 ORTHO05D007060 6.8e-62 240.7 138 80.4
Actinidia00628 Actinidia chinensis HOM05D005689 ORTHO05D007060 8.9e-62 240.4 138 80.4
Cpa.g.sc20.100 Carica papaya HOM05D005689 ORTHO05D007060 8.9e-62 240.4 137 81.0
Glyma.09G245600 Glycine max HOM05D005689 ORTHO05D007060 8.9e-62 240.4 138 80.4
TPR.G32114 Trifolium pratense HOM05D005689 ORTHO05D007060 8.9e-62 240.4 138 80.4
CiPaw.06G120900 Carya illinoinensis HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 80.4
ClCG02G003990 Citrullus lanatus HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 79.7
MELO3C013345.2 Cucumis melo HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 79.7
CsaV3_7G001110 Cucumis sativus L. HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 79.7
Nitab4.5_0003698g0100 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 80.4
RcHm_v2.0_Chr6g0278501 Rosa chinensis HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 79.7
Sed0024195 Sechium edule HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 79.7
Solyc01g111690.3 Solanum lycopersicum HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 80.4
Sopen01g053730 Solanum pennellii HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 80.4
PGSC0003DMG400006181 Solanum tuberosum HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 80.4
TWI75G0361 Tripterygium wilfordii HOM05D005689 ORTHO05D007060 1.2e-61 240.0 138 81.2
FAN27G1498 Fragaria x ananassa HOM05D005689 ORTHO05D007060 1.5e-61 239.6 138 79.0
TAR376G1105 Trochodendron aralioides HOM05D005689 ORTHO05D007060 1.5e-61 239.6 139 80.6
Lj1g0014054 Lotus japonicus HOM05D005689 ORTHO05D007060 2.0e-61 239.2 138 79.7
MD10G1126300 Malus domestica HOM05D005689 ORTHO05D007060 2.0e-61 239.2 138 79.7
ECA233G5373 Erigeron canadensis HOM05D005689 ORTHO05D007060 2.6e-61 238.8 136 80.9
Phvul.008G049900 Phaseolus vulgaris HOM05D005689 ORTHO05D007060 2.6e-61 238.8 138 79.7
CAN.G588.89 Capsicum annuum HOM05D005689 ORTHO05D007060 3.4e-61 238.4 138 79.7
FAN20G0310 Fragaria x ananassa HOM05D005689 ORTHO05D007060 3.4e-61 238.4 138 79.0
Lalb_Chr21g0306961 Lupinus albus HOM05D005689 ORTHO05D007060 3.4e-61 238.4 138 79.0
unitig_0.g36 Utricularia gibba HOM05D005689 ORTHO05D007060 3.4e-61 238.4 138 79.0
Lsat_1_v5_gn_8_123161 Lactuca sativa HOM05D005689 ORTHO05D007060 9.8e-61 236.9 136 79.4
Zm00001eb331790 Zea mays HOM05D005689 ORTHO05D007060 9.8e-61 236.9 140 77.9
HanXRQChr03g0080211 Helianthus annuus HOM05D005689 ORTHO05D007060 1.3e-60 236.5 136 79.4
Os09g0541500 Oryza sativa ssp. japonica HOM05D005689 ORTHO05D007060 3.7e-60 235.0 140 76.4
CDE02G0259 Ceratophyllum demersum HOM05D005689 ORTHO05D007060 6.3e-60 234.2 139 78.4
DCAR_003179 Daucus carota HOM05D005689 ORTHO05D007060 1.1e-59 233.4 139 78.4
DCAR_030423 Daucus carota HOM05D005689 ORTHO05D007060 2.4e-59 232.3 139 77.7
HPP92_012947 Vanilla planifolia HOM05D005689 ORTHO05D007060 7.0e-59 230.7 140 76.4
Sp4g00120 Schrenkiella parvula HOM05D005689 ORTHO05D007060 1.6e-58 229.6 138 75.4
THA.LOC104824758 Tarenaya hassleriana HOM05D005689 ORTHO05D007060 1.6e-58 229.6 137 77.4
AT2G20930 Arabidopsis thaliana HOM05D005689 ORTHO05D007060 2.0e-58 229.2 138 76.1
BcaB08g34950 Brassica carinata HOM05D005689 ORTHO05D007060 2.0e-58 229.2 138 75.4
BcaC07g41181 Brassica carinata HOM05D005689 ORTHO05D007060 2.0e-58 229.2 138 75.4
AL4G10060 Arabidopsis lyrata HOM05D005689 ORTHO05D007060 2.7e-58 228.8 138 76.1
Thhalv10026520m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.5e-58 228.4 137 75.9
Nitab4.5_0000283g0450 Nicotiana tabacum HOM05D005689 ORTHO05D007060 3.5e-58 228.4 148 74.3
Carub.0004s0002 Capsella rubella HOM05D005689 ORTHO05D007060 4.5e-58 228.0 138 75.4
CARHR174210 Cardamine hirsuta HOM05D005689 ORTHO05D007060 5.9e-58 227.6 138 76.1
Oeu019918.2 Olea europaea HOM05D005689 ORTHO05D007060 1.0e-57 226.9 164 67.7
Pp3c12_10830 Physcomitrium patens HOM05D005689 ORTHO05D007060 1.0e-57 226.9 140 74.3
Psat3g100360 Pisum sativum HOM05D005689 ORTHO05D007060 1.3e-57 226.5 130 80.0
SalBow5G2226 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.3e-57 226.5 161 68.3
Aa31LG6G16620 Aethionema arabicum HOM05D005689 ORTHO05D007060 2.3e-57 225.7 137 74.5
SalBow1G8746 Salvia bowleyana HOM05D005689 ORTHO05D007060 2.3e-57 225.7 137 75.9
BcaNung01978 Brassica carinata HOM05D005689 ORTHO05D007060 1.1e-56 223.4 137 73.7
Thhalv10000369m.g Eutrema salsugineum HOM05D005689 ORTHO05D007060 3.3e-56 221.9 138 74.6
Sp7g37220 Schrenkiella parvula HOM05D005689 ORTHO05D007060 4.3e-56 221.5 137 75.2
A06p48990 Brassica napus HOM05D005689 ORTHO05D007060 7.3e-56 220.7 137 73.0
BraA06t27765Z Brassica rapa HOM05D005689 ORTHO05D007060 7.3e-56 220.7 137 73.0
A09p58620 Brassica napus HOM05D005689 ORTHO05D007060 1.2e-55 219.9 138 73.9
C08p41910 Brassica napus HOM05D005689 ORTHO05D007060 1.2e-55 219.9 138 73.9
BolC8t51754H Brassica oleracea HOM05D005689 ORTHO05D007060 1.2e-55 219.9 138 73.9
BraA09t41249Z Brassica rapa HOM05D005689 ORTHO05D007060 1.2e-55 219.9 138 73.9
Sabra09G0106300 Salix brachista HOM05D005689 ORTHO05D007060 2.1e-55 219.2 202 56.9
SMO228G0084 Selaginella moellendorffii HOM05D005689 ORTHO05D007060 2.1e-55 219.2 138 68.8
C07p63680 Brassica napus HOM05D005689 ORTHO05D007060 2.8e-55 218.8 137 71.5
BolC7t46781H Brassica oleracea HOM05D005689 ORTHO05D007060 2.8e-55 218.8 137 71.5
Aa31LG7G15690 Aethionema arabicum HOM05D005689 ORTHO05D007060 4.0e-54 214.9 166 63.3
CBR_g33926 Chara braunii HOM05D000604 ORTHO05D004856 4.0e-54 214.9 134 73.1
ATR0315G041 Amborella trichopoda HOM05D005689 ORTHO05D007060 3.4e-53 211.8 127 76.4
arahy.Tifrunner.gnm1.ann1.9U6RFS Arachis hypogaea HOM05D005689 ORTHO05D007060 3.4e-53 211.8 199 55.8
SalBow5G0288 Salvia bowleyana HOM05D005689 ORTHO05D007060 1.7e-52 209.5 152 66.4
BcaC07g41184 Brassica carinata HOM05D005689 ORTHO05D007060 1.6e-50 203.0 138 68.8
Sed0010745 Sechium edule HOM05D005689 ORTHO05D007060 2.0e-50 202.6 138 68.8
HPP92_007243 Vanilla planifolia HOM05D005689 ORTHO05D007060 7.5e-45 184.1 117 70.1
CARHR111830 Cardamine hirsuta HOM05D005689 ORTHO05D007060 6.4e-44 181.0 112 73.2
SGA_v2.0_scaffold80G25838 Striga asiatica HOM05D005689 ORTHO05D007060 1.2e-42 176.8 160 55.6
Nitab4.5_0000079g0270 Nicotiana tabacum HOM05D005689 ORTHO05D007060 1.0e-41 173.7 100 78.0
Nn6g31939 Nelumbo nucifera HOM05D005689 ORTHO05D007060 6.6e-41 171.0 97 80.4
arahy.Tifrunner.gnm1.ann1.B1HGXN Arachis hypogaea HOM05D005689 ORTHO05D007060 4.3e-40 168.3 99 77.8
Potri.004G176500 Populus trichocarpa HOM05D005689 ORTHO05D007060 7.1e-35 151.0 114 64.0
Cre03.g165650 Chlamydomonas reinhardtii HOM05D005689 ORTHO05D007060 3.6e-31 138.7 143 49.0
Rhsim11G0192800 Rhododendron simsii HOM05D005689 ORTHO05D007060 2.1e-26 122.9 73 80.8
AUR62017814 Chenopodium quinoa HOM05D005689 ORTHO05D007060 8.7e-25 117.5 70 77.1
AUR62003497 Chenopodium quinoa HOM05D005689 ORTHO05D007060 7.3e-24 114.4 70 74.3
Oeu028973.1 Olea europaea HOM05D005689 ORTHO05D007060 4.7e-23 111.7 67 74.6
RcHm_v2.0_Chr4g0392001 Rosa chinensis HOM05D005689 ORTHO05D007060 5.8e-21 104.8 141 40.4
Ah.01g023120 Amaranthus hybridus HOM05D005689 ORTHO05D007060 1.2e-13 80.5 43 81.4
PRCOL_00005825 Prasinoderma coloniale HOM05D005689 ORTHO05D007060 2.9e-12 75.9 117 35.0
MCO02G011 Micromonas commoda HOM05D005689 ORTHO05D007060 4.2e-11 72.0 157 27.4
SGA_v2.0_scaffold199G41205 Striga asiatica HOM05D005689 ORTHO05D007060 7.1e-11 71.2 53 62.3
Pp3c14_6180 Physcomitrium patens HOM05D004554 ORTHO05D005360 3.5e-10 68.9 139 29.5
Mapoly0010s0129 Marchantia polymorpha HOM05D004554 ORTHO05D005360 1.3e-09 67.0 139 29.5
HanXRQChr05g0150591 Helianthus annuus HOM05D005689 ORTHO05D007060 1.9e-08 63.2 44 65.9
Cre13.g571600 Chlamydomonas reinhardtii HOM05D004554 ORTHO05D005360 1.6e-07 60.1 132 26.5
SGA_v2.0_scaffold11G05770 Striga asiatica HOM05D005689 ORTHO05D004382 4.8e-07 58.5 36 69.4


User provided reference genes

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