Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0212 Marchantia polymorpha HOM05D006477 ORTHO05D008311 3.8e-42 174.5 91 100.0
Eucgr.E04248 Eucalyptus grandis HOM05D006477 ORTHO05D008311 4.8e-21 104.4 86 61.6
Cc02_g26330 Coffea canephora HOM05D006477 ORTHO05D008311 1.1e-20 103.2 86 60.5
HanXRQChr17g0567251 Helianthus annuus HOM05D006477 ORTHO05D008311 1.1e-20 103.2 83 61.4
MELO3C020371.2 Cucumis melo HOM05D006477 ORTHO05D008311 1.4e-20 102.8 86 60.5
HanXRQChr15g0495711 Helianthus annuus HOM05D006477 ORTHO05D008311 1.4e-20 102.8 86 59.3
HanXRQChr16g0522681 Helianthus annuus HOM05D006477 ORTHO05D008311 1.4e-20 102.8 86 59.3
MD07G1076600 Malus domestica HOM05D006477 ORTHO05D008311 1.4e-20 102.8 86 60.5
Rhsim07G0044200 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.8e-20 102.4 86 61.6
Rhsim07G0044700 Rhododendron simsii HOM05D006477 ORTHO05D008311 1.8e-20 102.4 86 61.6
ATR0829G122 Amborella trichopoda HOM05D006477 ORTHO05D008311 2.4e-20 102.1 86 59.3
CSS0043287 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 2.4e-20 102.1 86 59.3
FAN10G2338 Fragaria x ananassa HOM05D006477 ORTHO05D008311 2.4e-20 102.1 83 61.4
Os02g0695700 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 2.4e-20 102.1 85 58.8
TWI59G0878 Tripterygium wilfordii HOM05D006477 ORTHO05D008311 2.4e-20 102.1 86 60.5
CSS0025225 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 3.1e-20 101.7 86 59.3
Prupe.2G097300 Prunus persica HOM05D006477 ORTHO05D008311 3.1e-20 101.7 86 59.3
GSVIVG01001179001 Vitis vinifera HOM05D006477 ORTHO05D008311 3.1e-20 101.7 86 60.5
ClCG06G008130 Citrullus lanatus HOM05D006477 ORTHO05D008311 4.1e-20 101.3 86 59.3
FvH4_7g07070 Fragaria vesca HOM05D006477 ORTHO05D008311 4.1e-20 101.3 83 61.4
FAN06G1803 Fragaria x ananassa HOM05D006477 ORTHO05D008311 4.1e-20 101.3 83 61.4
Lsat_1_v5_gn_4_40501 Lactuca sativa HOM05D006477 ORTHO05D008311 4.1e-20 101.3 86 59.3
MBI04_g32195_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 4.1e-20 101.3 86 60.5
QL05p054895 Quercus lobata HOM05D006477 ORTHO05D008311 4.1e-20 101.3 86 59.3
QL05p056339 Quercus lobata HOM05D006477 ORTHO05D008311 4.1e-20 101.3 86 59.3
FAN03G3069 Fragaria x ananassa HOM05D006477 ORTHO05D029725 6.9e-20 100.5 83 60.2
Zm00001eb326860 Zea mays HOM05D006477 ORTHO05D008311 6.9e-20 100.5 85 57.6
Actinidia05816 Actinidia chinensis HOM05D006477 ORTHO05D008311 9.0e-20 100.1 86 58.1
Actinidia31748 Actinidia chinensis HOM05D006477 ORTHO05D008311 9.0e-20 100.1 86 59.3
vmacro13578 Vaccinium macrocarpon HOM05D006477 ORTHO05D008311 9.0e-20 100.1 83 61.4
CiPaw.03G039600 Carya illinoinensis HOM05D006477 ORTHO05D008311 1.2e-19 99.8 86 58.1
Manes.06G016700 Manihot esculenta HOM05D006477 ORTHO05D008311 2.0e-19 99.0 86 57.0
Manes.06G016750 Manihot esculenta HOM05D006477 ORTHO05D008311 2.0e-19 99.0 86 57.0
Rhsim07G0124700 Rhododendron simsii HOM05D006477 ORTHO05D008311 2.0e-19 99.0 86 60.5
RcHm_v2.0_Chr1g0337021 Rosa chinensis HOM05D006477 ORTHO05D008311 2.0e-19 99.0 86 58.1
Aqoxy7G00962 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.6e-19 98.6 86 58.1
Migut.J00830 Erythranthe guttata HOM05D006477 ORTHO05D008311 2.6e-19 98.6 86 58.1
Nitab4.5_0004594g0090 Nicotiana tabacum HOM05D006477 ORTHO05D008311 2.6e-19 98.6 86 57.0
EL10Ac6g14607 Beta vulgaris HOM05D006477 ORTHO05D008311 3.4e-19 98.2 86 59.3
Duzib128G0861 Durio zibethinus HOM05D006477 ORTHO05D008311 3.4e-19 98.2 86 58.1
Pp3c3_2840 Physcomitrium patens HOM05D006477 ORTHO05D008311 4.5e-19 97.8 89 55.1
AUR62007820 Chenopodium quinoa HOM05D006477 ORTHO05D008311 5.9e-19 97.4 86 57.0
COL.COLO4_37808 Corchorus olitorius HOM05D006477 ORTHO05D008311 5.9e-19 97.4 86 58.1
Hma1.2p1_2755F.1_g327960 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 5.9e-19 97.4 86 58.1
SGA_v2.0_scaffold120G32938 Striga asiatica HOM05D006477 ORTHO05D008311 5.9e-19 97.4 86 55.8
MD02G1240300 Malus domestica HOM05D006477 ORTHO05D008311 7.6e-19 97.1 83 59.0
Potri.005G094100 Populus trichocarpa HOM05D006477 ORTHO05D008311 7.6e-19 97.1 86 57.0
ECA234G3546 Erigeron canadensis HOM05D006477 ORTHO05D008311 1.0e-18 96.7 86 57.0
Zm00001eb251360 Zea mays HOM05D006477 ORTHO05D008311 1.0e-18 96.7 85 55.3
arahy.Tifrunner.gnm1.ann1.2E1B03 Arachis hypogaea HOM05D006477 ORTHO05D008311 1.3e-18 96.3 86 54.7
arahy.Tifrunner.gnm1.ann1.B2599V Arachis hypogaea HOM05D006477 ORTHO05D008311 1.3e-18 96.3 86 54.7
Gohir.A12G270700 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.3e-18 96.3 86 57.0
Gohir.D12G271100 Gossypium hirsutum HOM05D006477 ORTHO05D008311 1.3e-18 96.3 86 57.0
Gorai.008G291500 Gossypium raimondii HOM05D006477 ORTHO05D008311 1.3e-18 96.3 86 57.0
CAN.G700.29 Capsicum annuum HOM05D006477 ORTHO05D008311 1.7e-18 95.9 83 54.2
COL.COLO4_15215 Corchorus olitorius HOM05D006477 ORTHO05D008311 1.7e-18 95.9 86 57.0
Cfa003675 Carpinus fangiana HOM05D006477 ORTHO05D008311 2.2e-18 95.5 86 57.0
Hma1.2p1_0915F.1_g236330 Hydrangea macrophylla HOM05D006477 ORTHO05D008311 2.2e-18 95.5 86 57.0
SEGI_06535 Sequoiadendron giganteum HOM05D006477 ORTHO05D008311 2.2e-18 95.5 86 54.7
PGSC0003DMG400001789 Solanum tuberosum HOM05D006477 ORTHO05D008311 2.2e-18 95.5 83 56.6
Haze_15813 Corylus avellana HOM05D006477 ORTHO05D008311 2.9e-18 95.1 86 57.0
Aqoxy6G02884 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 3.8e-18 94.7 86 54.7
ECA234G1029 Erigeron canadensis HOM05D006477 ORTHO05D008311 3.8e-18 94.7 86 55.8
SalBow6G6803 Salvia bowleyana HOM05D006477 ORTHO05D008311 3.8e-18 94.7 86 53.5
Thecc.07G155600 Theobroma cacao HOM05D006477 ORTHO05D008311 3.8e-18 94.7 86 57.0
Nitab4.5_0004800g0020 Nicotiana tabacum HOM05D006477 ORTHO05D008311 6.5e-18 94.0 86 54.7
Ca_18942_v3 Cicer arietinum L. HOM05D006477 ORTHO05D008311 8.5e-18 93.6 86 51.2
MBI04_g32196_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 8.5e-18 93.6 86 55.8
PGR042G2475 Punica granatum HOM05D006477 ORTHO05D008311 8.5e-18 93.6 86 55.8
HPP92_026480 Vanilla planifolia HOM05D006477 ORTHO05D008311 8.5e-18 93.6 86 52.3
Solyc01g081120.2 Solanum lycopersicum HOM05D006477 ORTHO05D008311 1.1e-17 93.2 83 54.2
Sopen01g032730 Solanum pennellii HOM05D006477 ORTHO05D008311 1.1e-17 93.2 83 54.2
Aqoxy7G00965 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.5e-17 92.0 83 56.6
Lalb_Chr25g0285311 Lupinus albus HOM05D006477 ORTHO05D008311 3.2e-17 91.7 85 51.8
QL03p061357 Quercus lobata HOM05D006477 ORTHO05D008311 3.2e-17 91.7 86 55.8
SHI34920 Sapria himalayana HOM05D006477 ORTHO05D008311 3.2e-17 91.7 79 59.5
unitig_27.g24761 Utricularia gibba HOM05D006477 ORTHO05D008311 4.2e-17 91.3 82 54.9
Phvul.011G119800 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 7.2e-17 90.5 81 54.3
QL05p056259 Quercus lobata HOM05D006477 ORTHO05D008311 7.2e-17 90.5 82 56.1
Cpa.g.sc53.139 Carica papaya HOM05D006477 ORTHO05D008311 9.3e-17 90.1 83 54.2
Phvul.010G094300 Phaseolus vulgaris HOM05D006477 ORTHO05D008311 9.3e-17 90.1 84 52.4
TPR.G24136 Trifolium pratense HOM05D006477 ORTHO05D008311 1.2e-16 89.7 86 50.0
Lj1g0022259 Lotus japonicus HOM05D006477 ORTHO05D008311 2.1e-16 89.0 86 50.0
TPR.G19239 Trifolium pratense HOM05D006477 ORTHO05D008311 2.1e-16 89.0 86 50.0
Aqoxy5G03392 Aquilegia oxysepala HOM05D006477 ORTHO05D008311 2.7e-16 88.6 79 57.0
Medtr4g078485 Medicago truncatula HOM05D006477 ORTHO05D008311 3.6e-16 88.2 82 53.7
Os04g0624900 Oryza sativa ssp. japonica HOM05D006477 ORTHO05D008311 3.6e-16 88.2 79 55.7
Sabra05G0077900 Salix brachista HOM05D006477 ORTHO05D008311 2.3e-15 85.5 82 53.7
Glyma.12G115400 Glycine max HOM05D006477 ORTHO05D008311 3.0e-15 85.1 84 48.8
CsaV3_2G011040 Cucumis sativus L. HOM05D006477 ORTHO05D008311 5.1e-15 84.3 73 58.9
Glyma.06G291500 Glycine max HOM05D006477 ORTHO05D008311 5.1e-15 84.3 86 46.5
Ciclev10023972m.g Citrus clementina HOM05D006477 ORTHO05D008311 6.7e-15 84.0 83 51.8
THA.LOC104823802 Tarenaya hassleriana HOM05D006477 ORTHO05D008311 6.3e-13 77.4 82 48.8
PSO017G7014 Papaver somniferum HOM05D006477 ORTHO05D008311 1.1e-12 76.6 71 52.1
AL2G19670 Arabidopsis lyrata HOM05D006477 ORTHO05D008311 4.1e-12 74.7 85 44.7
Atru.chr3.3240 Acer truncatum HOM05D006477 ORTHO05D008311 5.3e-12 74.3 82 51.2
AT1G65032 Arabidopsis thaliana HOM05D006477 ORTHO05D008311 5.3e-12 74.3 85 44.7
C06p41870 Brassica napus HOM05D006477 ORTHO05D008311 9.1e-12 73.6 85 42.4
BolC6t39243H Brassica oleracea HOM05D006477 ORTHO05D008311 9.1e-12 73.6 85 42.4
Carub.0002s1025 Capsella rubella HOM05D006477 ORTHO05D008311 9.1e-12 73.6 85 43.5
BcaNung05073 Brassica carinata HOM05D006477 ORTHO05D008311 1.5e-11 72.8 85 43.5
CSS0008051 Camellia sinensis var. sinensis HOM05D006477 ORTHO05D008311 1.5e-11 72.8 86 47.7
A07p34050 Brassica napus HOM05D006477 ORTHO05D008311 2.6e-11 72.0 85 42.4
C06p42740 Brassica napus HOM05D006477 ORTHO05D008311 2.6e-11 72.0 85 42.4
C06p42790 Brassica napus HOM05D006477 ORTHO05D008311 2.6e-11 72.0 85 42.4
BolC6t39165H Brassica oleracea HOM05D006477 ORTHO05D008311 2.6e-11 72.0 85 42.4
Sp5g22520 Schrenkiella parvula HOM05D006477 ORTHO05D008311 2.6e-11 72.0 85 42.4
Thhalv10019379m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 3.4e-11 71.6 85 42.4
BraA07t31031Z Brassica rapa HOM05D006477 ORTHO05D008311 1.0e-10 70.1 85 41.2
Peaxi162Scf00592g00428 Petunia axillaris HOM05D000001 ORTHO05D000003 1.0e-10 70.1 60 56.7
DCAR_024347 Daucus carota HOM05D006477 ORTHO05D008311 2.9e-10 68.6 60 61.7
BcaB03g15190 Brassica carinata HOM05D006477 ORTHO05D008311 2.3e-07 58.9 85 41.2
BcaC08g46243 Brassica carinata HOM05D006477 ORTHO05D008311 3.0e-07 58.5 85 37.6
Thhalv10019610m.g Eutrema salsugineum HOM05D006477 ORTHO05D008311 3.0e-07 58.5 70 44.3
Sed0027346 Sechium edule HOM05D006477 ORTHO05D008311 3.9e-07 58.2 51 56.9
SGA_v2.0_scaffold195G40833 Striga asiatica HOM05D006477 ORTHO05D404429 2.0e-06 55.8 60 53.3
MBI16_g31701_MAGBIO Magnolia biondii HOM05D006477 ORTHO05D008311 3.3e-06 55.1 60 53.3
Sc21g0001600 Simmondsia chinensis HOM05D006477 ORTHO05D008311 4.4e-06 54.7 44 59.1
arahy.Tifrunner.gnm1.ann1.HM6XW1 Arachis hypogaea HOM05D006477 ORTHO05D008311 5.7e-06 54.3 67 43.3
Rhsim13G0110700 Rhododendron simsii HOM05D006477 ORTHO05D008311 5.7e-06 54.3 45 62.2


User provided reference genes

Program Settings