Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 2.9e-140 501.9 258 100.0
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 5.3e-73 278.5 249 54.2
SMO236G0018 Selaginella moellendorffii HOM05D005250 ORTHO05D006342 1.3e-66 257.3 224 56.7
Ah.02g126720 Amaranthus hybridus HOM05D005250 ORTHO05D006342 2.0e-64 250.0 235 52.8
Hund25156 Selenicereus undatus HOM05D005250 ORTHO05D006342 3.4e-64 249.2 243 49.8
MBI19_g36132_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 3.8e-63 245.7 240 49.2
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 4.9e-63 245.4 237 49.8
Hma1.2p1_0473F.1_g160080 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.9e-63 245.4 235 51.5
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 6.4e-63 245.0 258 48.4
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 1.1e-62 244.2 247 49.0
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.4e-62 243.8 237 49.4
HanXRQChr12g0365051 Helianthus annuus HOM05D005250 ORTHO05D006342 1.9e-62 243.4 261 46.4
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 3.2e-62 242.7 246 49.6
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 3.2e-62 242.7 243 47.7
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 5.5e-62 241.9 229 52.0
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 9.3e-62 241.1 250 48.4
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 1.6e-61 240.4 231 50.6
Actinidia13405 Actinidia chinensis HOM05D005250 ORTHO05D006342 2.1e-61 240.0 243 50.2
FAN22G1621 Fragaria x ananassa HOM05D000202 ORTHO05D006342 2.1e-61 240.0 246 49.2
Manes.01G024400 Manihot esculenta HOM05D005250 ORTHO05D006342 2.1e-61 240.0 237 50.2
Ciclev10032293m.g Citrus clementina HOM05D005250 ORTHO05D006342 3.5e-61 239.2 235 50.6
CsaV3_6G033890 Cucumis sativus L. HOM05D005250 ORTHO05D006342 3.5e-61 239.2 241 50.2
PSO339G6010 Papaver somniferum HOM05D005250 ORTHO05D006342 3.5e-61 239.2 240 48.3
RcHm_v2.0_Chr4g0437361 Rosa chinensis HOM05D005250 ORTHO05D006342 3.5e-61 239.2 248 48.4
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 3.5e-61 239.2 243 49.8
FAN17G2738 Fragaria x ananassa HOM05D000202 ORTHO05D006342 6.0e-61 238.4 246 48.8
PSO384G2373 Papaver somniferum HOM05D005250 ORTHO05D006342 6.0e-61 238.4 240 48.3
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 7.9e-61 238.0 231 51.1
FAN12G3515 Fragaria x ananassa HOM05D005250 ORTHO05D006342 1.0e-60 237.7 248 48.8
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.0e-60 237.7 233 49.4
TPR.G3346 Trifolium pratense HOM05D005250 ORTHO05D006342 1.3e-60 237.3 240 50.0
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 1.8e-60 236.9 234 51.3
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.3e-60 236.5 229 49.8
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 2.3e-60 236.5 235 50.2
SalBow2G3543 Salvia bowleyana HOM05D005250 ORTHO05D006342 2.3e-60 236.5 246 48.4
Eucgr.G02422 Eucalyptus grandis HOM05D005250 ORTHO05D006342 3.0e-60 236.1 245 48.2
Lalb_Chr16g0391841 Lupinus albus HOM05D005250 ORTHO05D006342 3.0e-60 236.1 235 48.9
Thhalv10004726m.g Eutrema salsugineum HOM05D005250 ORTHO05D006342 3.9e-60 235.7 233 51.5
Glyma.11G011400 Glycine max HOM05D005250 ORTHO05D006342 3.9e-60 235.7 236 51.3
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 5.1e-60 235.3 231 49.8
Phvul.003G280700 Phaseolus vulgaris HOM05D005250 ORTHO05D006342 5.1e-60 235.3 235 51.1
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 6.7e-60 235.0 238 49.2
SGA_v2.0_scaffold36G14486 Striga asiatica HOM05D005250 ORTHO05D006342 6.7e-60 235.0 269 46.8
arahy.Tifrunner.gnm1.ann1.F58IRU Arachis hypogaea HOM05D005250 ORTHO05D006342 8.7e-60 234.6 238 49.6
Ca_22871_v3 Cicer arietinum L. HOM05D005250 ORTHO05D006342 8.7e-60 234.6 223 51.1
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 8.7e-60 234.6 240 48.3
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 1.1e-59 234.2 245 47.3
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 1.1e-59 234.2 237 48.1
Sp2g14610 Schrenkiella parvula HOM05D005250 ORTHO05D006342 1.5e-59 233.8 233 51.5
BcaC04g21447 Brassica carinata HOM05D005250 ORTHO05D006342 1.9e-59 233.4 233 51.1
C09p31650 Brassica napus HOM05D005250 ORTHO05D006342 1.9e-59 233.4 233 51.1
Medtr8g066180 Medicago truncatula HOM05D005250 ORTHO05D006342 1.9e-59 233.4 239 49.0
Psat4g092800 Pisum sativum HOM05D005250 ORTHO05D006342 1.9e-59 233.4 225 51.6
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 2.5e-59 233.0 226 49.6
PGSC0003DMG400001920 Solanum tuberosum HOM05D005250 ORTHO05D006342 3.3e-59 232.6 244 48.0
CARHR146190 Cardamine hirsuta HOM05D005250 ORTHO05D006342 4.3e-59 232.3 246 48.0
Psat4g118880 Pisum sativum HOM05D005250 ORTHO05D006342 4.3e-59 232.3 225 51.1
BcaB07g30645 Brassica carinata HOM05D005250 ORTHO05D006342 5.6e-59 231.9 233 51.1
MELO3C011403.2 Cucumis melo HOM05D005250 ORTHO05D006342 7.4e-59 231.5 220 51.8
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 7.4e-59 231.5 231 48.9
Carub.0005s0293 Capsella rubella HOM05D005250 ORTHO05D006342 9.6e-59 231.1 233 50.6
AUR62003059 Chenopodium quinoa HOM05D005250 ORTHO05D006342 9.6e-59 231.1 262 45.0
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 9.6e-59 231.1 244 48.0
AL5G13570 Arabidopsis lyrata HOM05D005250 ORTHO05D006342 1.3e-58 230.7 233 50.2
A09p24730 Brassica napus HOM05D005250 ORTHO05D000117 1.6e-58 230.3 233 50.6
BraA09t38059Z Brassica rapa HOM05D005250 ORTHO05D000117 1.6e-58 230.3 233 50.6
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.6e-58 230.3 231 48.9
THA.LOC104805209 Tarenaya hassleriana HOM05D005250 ORTHO05D006342 2.1e-58 229.9 249 46.6
EL10Ac6g14674 Beta vulgaris HOM05D005250 ORTHO05D006342 3.7e-58 229.2 206 52.9
FvH4_4g29320 Fragaria vesca HOM05D005250 ORTHO05D006342 3.7e-58 229.2 231 48.9
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.7e-58 229.2 242 46.7
unitig_26.g10282 Utricularia gibba HOM05D005250 ORTHO05D006342 4.8e-58 228.8 231 47.6
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 6.2e-58 228.4 245 46.9
MD13G1056700 Malus domestica HOM05D005250 ORTHO05D006342 2.4e-57 226.5 224 49.1
CANSAT64G2789 Cannabis sativa HOM05D005250 ORTHO05D006342 5.3e-57 225.3 209 52.2
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 5.3e-57 225.3 209 50.7
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 2.0e-56 223.4 230 47.4
Duzib251G0604 Durio zibethinus HOM05D005250 ORTHO05D006342 4.5e-56 222.2 254 44.9
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 1.7e-55 220.3 228 46.5
Rhsim09G0122300 Rhododendron simsii HOM05D005250 ORTHO05D006342 2.2e-55 219.9 266 43.2
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.9e-55 219.5 222 47.3
Aa31LG2G6930 Aethionema arabicum HOM05D005250 ORTHO05D006342 6.5e-55 218.4 238 47.5
CSS0000657 Camellia sinensis var. sinensis HOM05D005250 ORTHO05D006342 6.5e-55 218.4 205 52.2
AUR62007874 Chenopodium quinoa HOM05D005250 ORTHO05D006342 6.5e-55 218.4 227 48.0
Nitab4.5_0000591g0010 Nicotiana tabacum HOM05D005250 ORTHO05D006342 1.9e-54 216.9 255 45.5
Aqoxy2G00415 Aquilegia oxysepala HOM05D005250 ORTHO05D006342 4.2e-54 215.7 240 45.8
Lj3A1027G83 Lonicera japonica HOM05D005250 ORTHO05D006342 5.5e-54 215.3 254 43.7
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 2.7e-53 213.0 215 49.3
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.3e-52 210.7 225 46.7
BcaC04g19887 Brassica carinata HOM05D005250 ORTHO05D006342 6.7e-52 208.4 241 46.5
Nitab4.5_0000014g0530 Nicotiana tabacum HOM05D005250 ORTHO05D006342 2.8e-50 203.0 216 47.7
Sabra10G0106500 Salix brachista HOM05D005250 ORTHO05D006342 7.6e-48 194.9 211 46.0
arahy.Tifrunner.gnm1.ann1.LMD1JY Arachis hypogaea HOM05D005250 ORTHO05D006342 1.7e-47 193.7 274 40.9
ClCG08G010590 Citrullus lanatus HOM05D005250 ORTHO05D006342 3.8e-47 192.6 237 41.4
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.9e-46 190.3 184 47.8
vmacro10476 Vaccinium macrocarpon HOM05D005250 ORTHO05D006342 5.5e-46 188.7 219 44.7
BcaC09g49168 Brassica carinata HOM05D005250 ORTHO05D006342 9.3e-46 188.0 190 50.5
SHI16015 Sapria himalayana HOM05D005250 ORTHO05D006342 2.1e-45 186.8 202 47.5
Haze_11860 Corylus avellana HOM05D005250 ORTHO05D006342 3.5e-45 186.0 270 38.9
BcaC06g35305 Brassica carinata HOM05D005250 ORTHO05D006342 6.1e-45 185.3 233 45.1
MBI19_g20787_MAGBIO Magnolia biondii HOM05D005250 ORTHO05D006342 7.9e-45 184.9 240 42.1
Solyc04g005310.3 Solanum lycopersicum HOM05D005250 ORTHO05D006342 1.8e-44 183.7 183 47.0
AT2G03780 Arabidopsis thaliana HOM05D005250 ORTHO05D006342 2.3e-44 183.3 179 49.7
BolC4t23671H Brassica oleracea HOM05D005250 ORTHO05D006342 9.7e-43 177.9 210 47.6
C04p21460 Brassica napus HOM05D005250 ORTHO05D006342 2.2e-42 176.8 234 44.9
SEGI_07586 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 2.4e-41 173.3 183 46.4
HPP92_021194 Vanilla planifolia HOM05D005250 ORTHO05D006342 1.2e-40 171.0 231 38.1
Peaxi162Scf00873g00111 Petunia axillaris HOM05D005250 ORTHO05D006342 1.7e-39 167.2 220 39.5
Hma1.2p1_1307F.1_g274740 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 2.9e-39 166.4 169 47.9
Dinv34022 Davidia involucrata HOM05D005250 ORTHO05D006342 1.4e-38 164.1 163 44.2
EL10Ac8g19720 Beta vulgaris HOM05D005250 ORTHO05D006342 6.1e-29 132.1 205 37.6
arahy.Tifrunner.gnm1.ann1.M1Z73T Arachis hypogaea HOM05D005250 ORTHO05D006342 4.8e-26 122.5 179 39.7
CBR_g489 Chara braunii HOM05D000019 ORTHO05D000048 2.4e-25 120.2 102 56.9
Hma1.2p1_0473F.1_g160070 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 4.1e-25 119.4 112 57.1
BolC9t57871H Brassica oleracea HOM05D005250 ORTHO05D006342 1.5e-22 110.9 165 40.6
C07p17630 Brassica napus HOM05D005250 ORTHO05D006342 4.7e-21 105.9 206 34.0
Cfa027242 Carpinus fangiana HOM05D005250 ORTHO05D006342 3.7e-18 96.3 242 30.6
A07p01490 Brassica napus HOM05D005250 ORTHO05D006342 6.3e-18 95.5 103 54.4
BraA04t18025Z Brassica rapa HOM05D005250 ORTHO05D006342 6.3e-18 95.5 96 55.2
A03p09860 Brassica napus HOM05D001868 ORTHO05D003985 1.0e-15 88.2 78 61.5
C09p61860 Brassica napus HOM05D005250 ORTHO05D006342 1.7e-15 87.4 103 50.5
SEGI_14635 Sequoiadendron giganteum HOM05D005250 ORTHO05D006342 3.6e-13 79.7 166 26.5
A05p26370 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-12 76.3 103 46.6
C08p18960 Brassica napus HOM05D005250 ORTHO05D006342 4.0e-12 76.3 74 54.1
Hma1.2p1_0473F.1_g160090 Hydrangea macrophylla HOM05D005250 ORTHO05D006342 1.5e-11 74.3 73 46.6
Aa31LG5G22420 Aethionema arabicum HOM05D001647 ORTHO05D001191 1.3e-10 71.2 109 37.6
PGSC0003DMG400008670 Solanum tuberosum HOM05D005250 ORTHO05D006342 1.8e-09 67.4 72 41.7
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 3.5e-08 63.2 232 23.7
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 5.9e-08 62.4 230 25.7
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 1.7e-07 60.8 218 24.3
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 3.8e-07 59.7 222 22.1
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 8.5e-07 58.5 228 22.8


User provided reference genes

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