Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0078 Marchantia polymorpha HOM05D004740 ORTHO05D005991 1.1e-207 726.5 389 100.0
Pp3c20_19160 Physcomitrium patens HOM05D004740 ORTHO05D005991 4.9e-147 525.0 383 74.7
Ah.15g096090 Amaranthus hybridus HOM05D004740 ORTHO05D005991 3.1e-141 505.8 338 77.5
EL10Ac7g15913 Beta vulgaris HOM05D004740 ORTHO05D005991 3.1e-141 505.8 329 80.2
Os03g0297400 Oryza sativa ssp. japonica HOM05D004740 ORTHO05D005991 8.9e-141 504.2 340 77.9
Hund29009 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.2e-140 503.8 331 80.1
Hund29013 Selenicereus undatus HOM05D004740 ORTHO05D005991 1.2e-140 503.8 331 80.1
Sc12g0002010 Simmondsia chinensis HOM05D004740 ORTHO05D005991 1.5e-140 503.4 360 76.1
HanXRQChr01g0012131 Helianthus annuus HOM05D004740 ORTHO05D005991 2.0e-140 503.1 331 78.9
AUR62001878 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.4e-140 501.9 329 78.7
CSS0045632 Camellia sinensis var. sinensis HOM05D004740 ORTHO05D005991 1.7e-139 500.0 327 78.9
BraA04t17832Z Brassica rapa HOM05D004740 ORTHO05D005991 3.7e-139 498.8 331 77.9
BolC3t14364H Brassica oleracea HOM05D004740 ORTHO05D005991 4.9e-139 498.4 385 70.1
AUR62009675 Chenopodium quinoa HOM05D004740 ORTHO05D005991 4.9e-139 498.4 333 77.2
C04p59110 Brassica napus HOM05D004740 ORTHO05D005991 6.4e-139 498.0 331 77.9
BolC4t27422H Brassica oleracea HOM05D004740 ORTHO05D005991 6.4e-139 498.0 331 77.9
Eucgr.J01859 Eucalyptus grandis HOM05D004740 ORTHO05D005991 8.3e-139 497.7 327 79.8
MD03G1055800 Malus domestica HOM05D004740 ORTHO05D005991 1.1e-138 497.3 354 74.9
QL01p026440 Quercus lobata HOM05D004740 ORTHO05D005991 1.1e-138 497.3 373 70.2
BcaB06g28350 Brassica carinata HOM05D004740 ORTHO05D005991 1.4e-138 496.9 385 69.6
THA.LOC104800771 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 1.4e-138 496.9 327 78.0
Sp4g12790 Schrenkiella parvula HOM05D004740 ORTHO05D005991 1.9e-138 496.5 382 69.6
BcaC02g08041 Brassica carinata HOM05D004740 ORTHO05D005991 2.4e-138 496.1 331 77.6
CsaV3_1G036540 Cucumis sativus L. HOM05D004740 ORTHO05D005991 2.4e-138 496.1 372 71.0
TWI75G0989 Tripterygium wilfordii HOM05D004740 ORTHO05D005991 2.4e-138 496.1 338 76.9
TAR623G0659 Trochodendron aralioides HOM05D004740 ORTHO05D005991 3.2e-138 495.7 337 76.6
A05p15240 Brassica napus HOM05D004740 ORTHO05D005991 4.1e-138 495.4 379 71.0
CiPaw.13G069800 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.1e-138 495.4 327 77.4
BolC4t23568H Brassica oleracea HOM05D004740 ORTHO05D005991 5.4e-138 495.0 376 72.3
FvH4_3g39690 Fragaria vesca HOM05D004740 ORTHO05D005991 5.4e-138 495.0 339 76.1
BraA05t20443Z Brassica rapa HOM05D004740 ORTHO05D005991 7.0e-138 494.6 379 71.0
Thhalv10016751m.g Eutrema salsugineum HOM05D004740 ORTHO05D005991 7.0e-138 494.6 327 77.4
Lj2A1092T52 Lonicera japonica HOM05D004740 ORTHO05D005991 7.0e-138 494.6 334 76.0
MD11G1056800 Malus domestica HOM05D004740 ORTHO05D005991 7.0e-138 494.6 338 76.6
C04p20390 Brassica napus HOM05D004740 ORTHO05D005991 9.2e-138 494.2 379 70.7
MELO3C020514.2 Cucumis melo HOM05D004740 ORTHO05D005991 9.2e-138 494.2 327 77.4
Thecc.09G357100 Theobroma cacao HOM05D004740 ORTHO05D005991 9.2e-138 494.2 384 69.5
BcaC02g11103 Brassica carinata HOM05D004740 ORTHO05D005991 1.2e-137 493.8 378 70.4
PGR102G2346 Punica granatum HOM05D004740 ORTHO05D005991 1.2e-137 493.8 387 69.8
Duzib168G1324 Durio zibethinus HOM05D004740 ORTHO05D005991 1.6e-137 493.4 389 68.1
BcaB02g10307 Brassica carinata HOM05D004740 ORTHO05D005991 2.0e-137 493.0 336 76.8
CARHR123500 Cardamine hirsuta HOM05D004740 ORTHO05D005991 2.0e-137 493.0 340 75.9
PSO801G0690 Papaver somniferum HOM05D004740 ORTHO05D005991 2.7e-137 492.7 382 69.9
COL.COLO4_11143 Corchorus olitorius HOM05D004740 ORTHO05D005991 4.6e-137 491.9 386 69.2
Aa31LG5G6500 Aethionema arabicum HOM05D004740 ORTHO05D005991 6.0e-137 491.5 348 74.4
Carub.0004s1135 Capsella rubella HOM05D004740 ORTHO05D005991 6.0e-137 491.5 379 70.2
Peaxi162Scf00055g00057 Petunia axillaris HOM05D004740 ORTHO05D005991 6.0e-137 491.5 353 73.1
Rhsim13G0064700 Rhododendron simsii HOM05D004740 ORTHO05D005991 6.0e-137 491.5 327 78.9
RcHm_v2.0_Chr5g0071571 Rosa chinensis HOM05D004740 ORTHO05D005991 6.0e-137 491.5 339 75.8
vmacro02923 Vaccinium macrocarpon HOM05D004740 ORTHO05D005991 6.0e-137 491.5 346 76.0
arahy.Tifrunner.gnm1.ann1.T9C115 Arachis hypogaea HOM05D004740 ORTHO05D005991 7.8e-137 491.1 333 76.3
CAN.G911.42 Capsicum annuum HOM05D004740 ORTHO05D005991 7.8e-137 491.1 337 76.3
Glyma.18G057700 Glycine max HOM05D004740 ORTHO05D005991 7.8e-137 491.1 348 73.9
Gohir.A03G025700 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.0e-136 490.7 387 68.2
Solyc01g006980.4 Solanum lycopersicum HOM05D004740 ORTHO05D005991 1.0e-136 490.7 334 76.3
AL4G25030 Arabidopsis lyrata HOM05D004740 ORTHO05D005991 1.3e-136 490.3 353 73.4
AT2G30200 Arabidopsis thaliana HOM05D004740 ORTHO05D005991 1.3e-136 490.3 328 77.4
arahy.Tifrunner.gnm1.ann1.MX8U3M Arachis hypogaea HOM05D004740 ORTHO05D005991 1.3e-136 490.3 333 76.0
CDE06G2756 Ceratophyllum demersum HOM05D004740 ORTHO05D005991 1.7e-136 490.0 327 78.3
Gohir.D03G142800 Gossypium hirsutum HOM05D004740 ORTHO05D005991 1.7e-136 490.0 387 68.2
Gorai.003G150000 Gossypium raimondii HOM05D004740 ORTHO05D005991 1.7e-136 490.0 386 68.7
Nitab4.5_0002737g0070 Nicotiana tabacum HOM05D004740 ORTHO05D005991 1.7e-136 490.0 372 70.4
PSO339G6109 Papaver somniferum HOM05D004740 ORTHO05D005991 1.7e-136 490.0 397 67.3
arahy.Tifrunner.gnm1.ann1.FJ253B Arachis hypogaea HOM05D004740 ORTHO05D005991 2.3e-136 489.6 333 76.0
Ciclev10028558m.g Citrus clementina HOM05D004740 ORTHO05D005991 2.3e-136 489.6 387 68.7
Sopen01g002970 Solanum pennellii HOM05D004740 ORTHO05D005991 2.3e-136 489.6 334 76.3
CANSAT54G2578 Cannabis sativa HOM05D004740 ORTHO05D005991 3.0e-136 489.2 327 75.8
ECA248G3413 Erigeron canadensis HOM05D004740 ORTHO05D005991 3.0e-136 489.2 334 76.0
Lj6g0008641 Lotus japonicus HOM05D004740 ORTHO05D005991 3.0e-136 489.2 327 75.8
Haze_24407 Corylus avellana HOM05D004740 ORTHO05D005991 3.9e-136 488.8 343 74.1
Sed0001589 Sechium edule HOM05D004740 ORTHO05D005991 5.0e-136 488.4 333 75.4
Zm00001eb013760 Zea mays HOM05D004740 ORTHO05D005991 5.0e-136 488.4 339 75.5
THA.LOC104826277 Tarenaya hassleriana HOM05D004740 ORTHO05D005991 6.6e-136 488.0 327 76.1
Manes.18G127700 Manihot esculenta HOM05D004740 ORTHO05D005991 8.6e-136 487.6 327 77.7
Phvul.006G073300 Phaseolus vulgaris HOM05D004740 ORTHO05D005991 8.6e-136 487.6 375 69.9
Dinv28694 Davidia involucrata HOM05D004740 ORTHO05D005991 1.1e-135 487.3 392 67.9
PGSC0003DMG400021362 Solanum tuberosum HOM05D004740 ORTHO05D005991 1.1e-135 487.3 334 76.0
Cfa011772 Carpinus fangiana HOM05D004740 ORTHO05D005991 1.5e-135 486.9 343 74.1
DCAR_018228 Daucus carota HOM05D004740 ORTHO05D005991 1.5e-135 486.9 340 73.8
Potri.009G077800 Populus trichocarpa HOM05D004740 ORTHO05D005991 1.9e-135 486.5 330 76.7
Sabra09G0059400 Salix brachista HOM05D004740 ORTHO05D005991 3.3e-135 485.7 333 77.2
Nitab4.5_0001121g0110 Nicotiana tabacum HOM05D004740 ORTHO05D005991 4.3e-135 485.3 327 76.5
FAN25G0671 Fragaria x ananassa HOM05D004740 ORTHO05D005991 7.3e-135 484.6 351 73.2
Aqoxy2G00789 Aquilegia oxysepala HOM05D004740 ORTHO05D005991 9.5e-135 484.2 315 79.0
Prupe.6G048900 Prunus persica HOM05D004740 ORTHO05D005991 9.5e-135 484.2 338 74.9
SGA_v2.0_scaffold146G36123 Striga asiatica HOM05D004740 ORTHO05D005991 9.5e-135 484.2 326 77.3
VMungo0540G0639 Vigna mungo HOM05D004740 ORTHO05D005991 1.2e-134 483.8 327 76.1
Lalb_Chr18g0051371 Lupinus albus HOM05D004740 ORTHO05D005991 1.6e-134 483.4 376 68.4
SalBow2G1640 Salvia bowleyana HOM05D004740 ORTHO05D005991 1.6e-134 483.4 383 69.2
MSTRG.17889 Avicennia marina HOM05D004740 ORTHO05D005991 2.1e-134 483.0 383 69.7
Glyma.11G164500 Glycine max HOM05D004740 ORTHO05D005991 2.8e-134 482.6 327 76.1
HPP92_013770 Vanilla planifolia HOM05D004740 ORTHO05D005991 2.8e-134 482.6 328 77.1
Psat5g153440 Pisum sativum HOM05D004740 ORTHO05D005991 3.6e-134 482.3 326 76.1
FAN11G1726 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-134 481.9 362 71.3
FAN16G0900 Fragaria x ananassa HOM05D004740 ORTHO05D005991 4.7e-134 481.9 362 71.3
Ca_15002_v3 Cicer arietinum L. HOM05D004740 ORTHO05D005991 6.2e-134 481.5 379 68.9
TAR633G1387 Trochodendron aralioides HOM05D004740 ORTHO05D005991 1.4e-133 480.3 327 76.8
AagrBONN_evm.TU.Sc2ySwM_228.2654 Anthoceros agrestis HOM05D004740 ORTHO05D005991 2.3e-133 479.6 393 66.9
ClCG03G000380 Citrullus lanatus HOM05D004740 ORTHO05D005991 2.3e-133 479.6 360 70.8
FAN21G3316 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.1e-133 479.2 361 71.2
FAN21G3649 Fragaria x ananassa HOM05D004740 ORTHO05D005991 3.1e-133 479.2 361 71.2
Medtr3g031380 Medicago truncatula HOM05D004740 ORTHO05D005991 6.8e-133 478.0 380 68.2
HanXRQChr01g0012161 Helianthus annuus HOM05D004740 ORTHO05D005991 8.9e-133 477.6 389 68.1
Lalb_Chr15g0083211 Lupinus albus HOM05D004740 ORTHO05D005991 1.5e-132 476.9 376 68.1
SEGI_23058 Sequoiadendron giganteum HOM05D004740 ORTHO05D005991 4.4e-132 475.3 387 68.0
Migut.N00764 Erythranthe guttata HOM05D004740 ORTHO05D005991 5.8e-132 474.9 384 68.0
SMO200G0259 Selaginella moellendorffii HOM05D004740 ORTHO05D005991 1.7e-131 473.4 384 66.9
unitig_60.g25555 Utricularia gibba HOM05D004740 ORTHO05D005991 2.9e-131 472.6 382 67.8
MBI05_g35601_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D005991 5.4e-130 468.4 345 73.6
ATR0594G208 Amborella trichopoda HOM05D004740 ORTHO05D005991 3.5e-129 465.7 297 82.2
arahy.Tifrunner.gnm1.ann1.C8ZV0S Arachis hypogaea HOM05D004740 ORTHO05D005991 3.5e-129 465.7 326 74.5
Nn2g13251 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.0e-128 464.2 366 69.4
Cc01_g14810 Coffea canephora HOM05D004740 ORTHO05D005991 5.1e-128 461.8 297 80.5
Lsat_1_v5_gn_5_174621 Lactuca sativa HOM05D004740 ORTHO05D005991 1.9e-127 459.9 351 70.4
BcaB01g04122 Brassica carinata HOM05D004740 ORTHO05D005991 3.3e-127 459.1 350 70.3
TPR.G35611 Trifolium pratense HOM05D004740 ORTHO05D005991 4.0e-125 452.2 307 75.6
BcaC01g06023 Brassica carinata HOM05D004740 ORTHO05D005991 6.8e-125 451.4 339 71.4
CiPaw.14G054500 Carya illinoinensis HOM05D004740 ORTHO05D005991 4.4e-124 448.7 297 77.4
Actinidia32613 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.6e-121 438.7 341 68.3
Cre14.g621650 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 6.6e-120 434.9 319 71.8
Sed0003355 Sechium edule HOM05D004740 ORTHO05D005991 9.6e-119 431.0 309 72.2
A04p22970 Brassica napus HOM05D004740 ORTHO05D005991 3.1e-117 426.0 281 79.4
C03p19860 Brassica napus HOM05D004740 ORTHO05D005991 3.1e-117 426.0 336 69.9
SHI19203 Sapria himalayana HOM05D004740 ORTHO05D005991 5.8e-116 421.8 421 58.9
CBR_g33923 Chara braunii HOM05D004740 ORTHO05D005991 2.3e-112 409.8 369 62.3
Atru.chr3.4126 Acer truncatum HOM05D004740 ORTHO05D005991 3.3e-111 406.0 330 68.2
PRCOL_00005899 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 2.7e-105 386.3 277 71.5
Cpa.g.sc2.364 Carica papaya HOM05D004740 ORTHO05D005991 4.3e-103 379.0 246 81.7
MCO01G413 Micromonas commoda HOM05D004740 ORTHO05D005991 1.1e-101 374.4 313 64.5
arahy.Tifrunner.gnm1.ann1.R7F6LC Arachis hypogaea HOM05D004740 ORTHO05D005991 1.5e-100 370.5 272 72.8
Nn2g10995 Nelumbo nucifera HOM05D004740 ORTHO05D005991 1.6e-97 360.5 381 58.3
Potri.001G282600 Populus trichocarpa HOM05D004740 ORTHO05D005991 2.9e-91 339.7 275 67.3
GSVIVG01024639001 Vitis vinifera HOM05D004740 ORTHO05D005991 1.6e-81 307.4 198 79.8
A03p16880 Brassica napus HOM05D004740 ORTHO05D005991 8.2e-70 268.5 198 70.2
BraA03t10976Z Brassica rapa HOM05D004740 ORTHO05D005991 8.2e-70 268.5 198 70.2
PRCOL_00000466 Prasinoderma coloniale HOM05D004740 ORTHO05D005991 3.8e-67 259.6 294 49.0
Oeu005355.3 Olea europaea HOM05D003290 ORTHO05D005991 1.9e-66 257.3 166 79.5
MCO04G051 Micromonas commoda HOM05D004740 ORTHO05D005991 6.3e-62 242.3 310 46.1
Actinidia23202 Actinidia chinensis HOM05D004740 ORTHO05D005991 4.4e-55 219.5 355 42.0
Cre02.g088250 Chlamydomonas reinhardtii HOM05D004740 ORTHO05D005991 9.7e-55 218.4 330 42.7
Actinidia02620 Actinidia chinensis HOM05D004740 ORTHO05D005991 1.6e-49 201.1 153 72.5
GSVIVG01024638001 Vitis vinifera HOM05D004740 ORTHO05D005991 3.6e-49 199.9 129 77.5
Nitab4.5_0006359g0020 Nicotiana tabacum HOM05D004740 ORTHO05D005991 3.0e-40 170.2 197 52.3
COL.COLO4_24546 Corchorus olitorius HOM05D004740 ORTHO05D008255 8.8e-40 168.7 191 53.4
Nitab4.5_0000644g0120 Nicotiana tabacum HOM05D004740 ORTHO05D005991 2.0e-31 141.0 149 55.7
Nitab4.5_0006126g0030 Nicotiana tabacum HOM05D004740 ORTHO05D005991 5.4e-29 132.9 213 43.7
Zm00001eb396720 Zea mays HOM05D004740 ORTHO05D444996 1.5e-26 124.8 80 80.0
HPP92_013838 Vanilla planifolia HOM05D004740 ORTHO05D005991 5.8e-23 112.8 82 69.5
Oeu025052.1 Olea europaea HOM05D004740 ORTHO05D005991 7.5e-23 112.5 124 53.2
MBI10_g37352_MAGBIO Magnolia biondii HOM05D004740 ORTHO05D241996 1.3e-14 85.1 75 65.3
HPP92_012003 Vanilla planifolia HOM05D004740 ORTHO05D429499 8.6e-11 72.4 85 47.1
Nitab4.5_0000644g0100 Nicotiana tabacum HOM05D004740 ORTHO05D284956 5.6e-10 69.7 59 61.0
VMungo0331G0938 Vigna mungo HOM05D000577 ORTHO05D001093 1.2e-09 68.6 62 62.9
Carub.0004s1136 Capsella rubella HOM05D004740 ORTHO05D005991 1.4e-08 65.1 42 66.7
COL.COLO4_37924 Corchorus olitorius HOM05D004740 ORTHO05D005991 2.6e-07 60.8 45 62.2
MBI15_g35007_MAGBIO Magnolia biondii HOM05D000363 ORTHO05D017376 2.2e-06 57.8 43 69.8


User provided reference genes

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