Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0009s0045 Marchantia polymorpha HOM05D006384 ORTHO05D007917 1.0e-128 463.4 234 100.0
SEGI_26624 Sequoiadendron giganteum HOM05D006384 ORTHO05D007917 4.3e-82 308.5 224 66.1
AagrBONN_evm.TU.Sc2ySwM_117.2066 Anthoceros agrestis HOM05D006384 ORTHO05D007917 3.6e-81 305.4 222 66.2
ATR0680G046 Amborella trichopoda HOM05D006384 ORTHO05D007917 1.5e-74 283.5 212 64.6
Peaxi162Scf00488g00042 Petunia axillaris HOM05D006384 ORTHO05D007917 1.1e-72 277.3 224 60.3
TAR369G0955 Trochodendron aralioides HOM05D006384 ORTHO05D007917 3.1e-72 275.8 216 60.6
Gorai.009G415700 Gossypium raimondii HOM05D006384 ORTHO05D007917 6.9e-72 274.6 216 60.6
COL.COLO4_26986 Corchorus olitorius HOM05D006384 ORTHO05D001525 9.0e-72 274.2 214 61.7
Sopen10g035590 Solanum pennellii HOM05D006384 ORTHO05D007917 1.2e-71 273.9 212 63.2
CAN.G509.15 Capsicum annuum HOM05D006384 ORTHO05D007917 1.5e-71 273.5 224 59.4
Gohir.A04G072900 Gossypium hirsutum HOM05D006384 ORTHO05D007917 2.6e-71 272.7 216 60.2
SGA_v2.0_scaffold452G51820 Striga asiatica HOM05D006384 ORTHO05D007917 2.6e-71 272.7 217 59.9
Gohir.D04G111800 Gossypium hirsutum HOM05D006384 ORTHO05D007917 3.4e-71 272.3 216 60.2
Nn2g11540 Nelumbo nucifera HOM05D006384 ORTHO05D007917 4.5e-71 271.9 219 59.4
Solyc10g086210.2 Solanum lycopersicum HOM05D006384 ORTHO05D007917 4.5e-71 271.9 212 62.7
Duzib093G1098 Durio zibethinus HOM05D006384 ORTHO05D007917 5.8e-71 271.6 216 59.7
arahy.Tifrunner.gnm1.ann1.TG2889 Arachis hypogaea HOM05D006384 ORTHO05D007917 7.6e-71 271.2 213 61.5
CiPaw.10G132500 Carya illinoinensis HOM05D006384 ORTHO05D007917 7.6e-71 271.2 213 61.5
CsaV3_3G035870 Cucumis sativus L. HOM05D006384 ORTHO05D007917 7.6e-71 271.2 221 58.4
Lj1g0002515 Lotus japonicus HOM05D006384 ORTHO05D007917 7.6e-71 271.2 216 60.2
arahy.Tifrunner.gnm1.ann1.FRB5VT Arachis hypogaea HOM05D006384 ORTHO05D007917 9.9e-71 270.8 213 61.5
ClCG10G020230 Citrullus lanatus HOM05D006384 ORTHO05D007917 9.9e-71 270.8 215 60.5
Thecc.05G063500 Theobroma cacao HOM05D006384 ORTHO05D007917 1.3e-70 270.4 216 59.3
MSTRG.10316 Avicennia marina HOM05D006384 ORTHO05D007917 1.7e-70 270.0 213 61.5
MD12G1115500 Malus domestica HOM05D006384 ORTHO05D007917 2.2e-70 269.6 217 59.0
MELO3C009346.2 Cucumis melo HOM05D006384 ORTHO05D007917 2.9e-70 269.2 222 57.7
Glyma.19G182800 Glycine max HOM05D006384 ORTHO05D007917 2.9e-70 269.2 213 59.6
HanXRQChr01g0027531 Helianthus annuus HOM05D006384 ORTHO05D007917 2.9e-70 269.2 216 58.8
Ah.15g092420 Amaranthus hybridus HOM05D006384 ORTHO05D007917 3.8e-70 268.9 227 58.6
Cc06_g04070 Coffea canephora HOM05D006384 ORTHO05D007917 6.4e-70 268.1 212 61.8
FAN09G1862 Fragaria x ananassa HOM05D006384 ORTHO05D007917 6.4e-70 268.1 215 57.7
GSVIVG01025711001 Vitis vinifera HOM05D006384 ORTHO05D007917 8.4e-70 267.7 213 59.6
C03p23970 Brassica napus HOM05D006384 ORTHO05D007917 1.1e-69 267.3 225 56.4
FAN14G1974 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-69 266.9 212 58.5
FAN14G4113 Fragaria x ananassa HOM05D006384 ORTHO05D007917 1.4e-69 266.9 212 58.5
Haze_20571 Corylus avellana HOM05D006384 ORTHO05D007917 1.9e-69 266.5 213 59.6
Migut.L01690 Erythranthe guttata HOM05D006384 ORTHO05D007917 1.9e-69 266.5 215 59.5
RcHm_v2.0_Chr3g0469981 Rosa chinensis HOM05D006384 ORTHO05D007917 1.9e-69 266.5 212 59.4
ECA248G2568 Erigeron canadensis HOM05D006384 ORTHO05D007917 2.4e-69 266.2 210 59.0
Sc20g0005270 Simmondsia chinensis HOM05D006384 ORTHO05D007917 2.4e-69 266.2 216 59.7
A03p20380 Brassica napus HOM05D006384 ORTHO05D007917 3.2e-69 265.8 218 57.8
BolC3t14788H Brassica oleracea HOM05D006384 ORTHO05D007917 3.2e-69 265.8 218 57.8
BraA03t11282Z Brassica rapa HOM05D006384 ORTHO05D007917 3.2e-69 265.8 218 57.8
Ca_08852_v3 Cicer arietinum L. HOM05D006384 ORTHO05D007917 3.2e-69 265.8 213 59.2
FAN02G0742 Fragaria x ananassa HOM05D006384 ORTHO05D007917 3.2e-69 265.8 212 58.5
THA.LOC104823480 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 3.2e-69 265.8 213 60.6
Os10g0443200 Oryza sativa ssp. japonica HOM05D006384 ORTHO05D007917 4.2e-69 265.4 213 58.7
Oeu016975.2 Olea europaea HOM05D006384 ORTHO05D007917 7.1e-69 264.6 219 57.1
Atru.chr8.1840 Acer truncatum HOM05D006384 ORTHO05D007917 9.3e-69 264.2 221 58.4
BcaB01g03801 Brassica carinata HOM05D006384 ORTHO05D007917 9.3e-69 264.2 218 58.3
Medtr7g101760 Medicago truncatula HOM05D006384 ORTHO05D007917 1.6e-68 263.5 213 58.2
BcaC01g05625 Brassica carinata HOM05D006384 ORTHO05D007917 2.1e-68 263.1 225 56.4
Carub.0004s1888 Capsella rubella HOM05D006384 ORTHO05D007917 2.1e-68 263.1 215 59.1
Lalb_Chr20g0112661 Lupinus albus HOM05D006384 ORTHO05D007917 2.1e-68 263.1 225 56.9
TWI74G0201 Tripterygium wilfordii HOM05D006384 ORTHO05D007917 2.1e-68 263.1 213 59.2
CARHR131500 Cardamine hirsuta HOM05D006384 ORTHO05D007917 3.5e-68 262.3 214 59.3
Psat3g043320 Pisum sativum HOM05D006384 ORTHO05D007917 3.5e-68 262.3 220 57.7
AT2G37020 Arabidopsis thaliana HOM05D006384 ORTHO05D007917 6.0e-68 261.5 215 59.1
PSO801G0099 Papaver somniferum HOM05D006384 ORTHO05D007917 6.0e-68 261.5 219 57.5
Rhsim03G0093600 Rhododendron simsii HOM05D006384 ORTHO05D007917 6.0e-68 261.5 215 59.1
AUR62040461 Chenopodium quinoa HOM05D006384 ORTHO05D007917 7.9e-68 261.2 213 58.2
Sp4g19300 Schrenkiella parvula HOM05D006384 ORTHO05D007917 1.0e-67 260.8 215 58.6
Hund20279 Selenicereus undatus HOM05D006384 ORTHO05D007917 1.0e-67 260.8 236 56.8
TPR.G9375 Trifolium pratense HOM05D006384 ORTHO05D007917 1.3e-67 260.4 219 56.6
AL4G33330 Arabidopsis lyrata HOM05D006384 ORTHO05D007917 1.8e-67 260.0 215 58.6
Lj2A115T51 Lonicera japonica HOM05D006384 ORTHO05D007917 2.3e-67 259.6 221 57.5
Hma1.2p1_0205F.1_g087265 Hydrangea macrophylla HOM05D006384 ORTHO05D007917 3.0e-67 259.2 219 58.4
Prupe.6G234600 Prunus persica HOM05D006384 ORTHO05D007917 3.9e-67 258.8 212 57.5
QL07p044018 Quercus lobata HOM05D006384 ORTHO05D007917 3.9e-67 258.8 237 54.0
CDE06G0314 Ceratophyllum demersum HOM05D006384 ORTHO05D007917 5.1e-67 258.5 212 59.0
THA.LOC104806487 Tarenaya hassleriana HOM05D006384 ORTHO05D007917 5.1e-67 258.5 215 58.6
Aa31LG5G22260 Aethionema arabicum HOM05D006384 ORTHO05D007917 6.7e-67 258.1 213 59.2
HPP92_025998 Vanilla planifolia HOM05D006384 ORTHO05D007917 6.7e-67 258.1 213 58.2
Aqoxy2G01819 Aquilegia oxysepala HOM05D006384 ORTHO05D007917 1.1e-66 257.3 223 57.0
Thhalv10016975m.g Eutrema salsugineum HOM05D006384 ORTHO05D007917 1.1e-66 257.3 215 57.7
Lsat_1_v5_gn_1_52961 Lactuca sativa HOM05D006384 ORTHO05D007917 1.1e-66 257.3 215 58.1
PSO339G6114 Papaver somniferum HOM05D006384 ORTHO05D007917 1.5e-66 256.9 219 56.6
DCAR_009302 Daucus carota HOM05D006384 ORTHO05D007917 2.5e-66 256.1 212 58.5
Phvul.001G178300 Phaseolus vulgaris HOM05D006384 ORTHO05D007917 2.5e-66 256.1 213 57.3
Potri.006G126200 Populus trichocarpa HOM05D006384 ORTHO05D007917 2.5e-66 256.1 216 56.9
SalBow5G1519 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.3e-66 255.8 228 56.6
SalBow5G1643 Salvia bowleyana HOM05D006384 ORTHO05D007917 3.3e-66 255.8 228 56.6
Sed0012269 Sechium edule HOM05D006384 ORTHO05D007917 1.6e-65 253.4 216 56.5
Eucgr.A01141 Eucalyptus grandis HOM05D006384 ORTHO05D007917 8.1e-65 251.1 224 55.8
VMungo1383G1856 Vigna mungo HOM05D006384 ORTHO05D007917 1.1e-64 250.8 213 56.3
SMO197G0035 Selaginella moellendorffii HOM05D006384 ORTHO05D007917 1.4e-64 250.4 191 60.2
CBR_g45408 Chara braunii HOM05D006384 ORTHO05D007917 4.0e-64 248.8 222 55.0
Nitab4.5_0002130g0050 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.0e-63 246.5 252 51.2
CBR_g30715 Chara braunii HOM05D001230 ORTHO05D007917 5.8e-63 245.0 219 53.9
Nitab4.5_0000754g0290 Nicotiana tabacum HOM05D006384 ORTHO05D007917 2.9e-62 242.7 252 51.6
VMungo1383G2663 Vigna mungo HOM05D006384 ORTHO05D007917 8.4e-62 241.1 213 54.9
CANSAT80G0575 Cannabis sativa HOM05D006384 ORTHO05D007917 1.6e-60 236.9 213 56.3
CSS0039092 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.7e-60 236.1 188 60.6
EL10Ac7g16562 Beta vulgaris HOM05D006384 ORTHO05D007917 6.0e-60 235.0 215 53.0
Actinidia40017 Actinidia chinensis HOM05D006384 ORTHO05D007917 1.9e-58 229.9 200 55.5
Dinv37301 Davidia involucrata HOM05D006384 ORTHO05D007917 3.7e-57 225.7 212 54.2
Sc20g0001670 Simmondsia chinensis HOM05D006384 ORTHO05D007917 7.4e-50 201.4 223 46.2
PGR004G0408 Punica granatum HOM05D006384 ORTHO05D007917 1.1e-48 197.6 164 57.9
unitig_0.g684 Utricularia gibba HOM05D006384 ORTHO05D007917 7.7e-47 191.4 159 58.5
Manes.09G064200 Manihot esculenta HOM05D006384 ORTHO05D007917 4.7e-36 155.6 139 55.4
Cpa.g.c35130 Carica papaya HOM05D006384 ORTHO05D007917 6.1e-36 155.2 146 50.0
TAR623G0498 Trochodendron aralioides HOM05D001475 ORTHO05D001525 6.7e-35 151.8 160 48.8
FvH4_6g16140 Fragaria vesca HOM05D006384 ORTHO05D007917 4.4e-34 149.1 145 49.0
vmacro07280 Vaccinium macrocarpon HOM05D006384 ORTHO05D007917 9.7e-34 147.9 150 50.7
PSO832G0438 Papaver somniferum HOM05D006384 ORTHO05D007917 2.0e-31 140.2 99 67.7
CSS0004677 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.2e-30 136.7 138 48.6
Ciclev10013845m.g Citrus clementina HOM05D006384 ORTHO05D007917 4.7e-28 129.0 122 50.8
AUR62041978 Chenopodium quinoa HOM05D006384 ORTHO05D007917 4.4e-26 122.5 118 51.7
Ciclev10013192m.g Citrus clementina HOM05D006384 ORTHO05D007917 1.7e-25 120.6 78 71.8
CSS0019463 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 2.4e-24 116.7 151 41.1
CSS0018803 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 7.0e-24 115.2 66 80.3
CSS0008908 Camellia sinensis var. sinensis HOM05D006384 ORTHO05D007917 1.2e-23 114.4 66 78.8
Cfa026119 Carpinus fangiana HOM05D006384 ORTHO05D007917 6.3e-17 92.0 236 27.1
Glyma.03G182200 Glycine max HOM05D006384 ORTHO05D007917 1.6e-12 77.4 85 44.7
Zm00001eb222550 Zea mays HOM05D006384 ORTHO05D007917 4.0e-11 72.8 83 43.4
PRCOL_00004570 Prasinoderma coloniale HOM05D006384 ORTHO05D007917 8.3e-09 65.1 209 23.9
TAR623G0863 Trochodendron aralioides HOM05D005250 ORTHO05D006342 8.3e-09 65.1 221 23.5
Migut.L01163 Erythranthe guttata HOM05D005250 ORTHO05D006342 1.8e-08 63.9 224 21.4
Os01g0265900 Oryza sativa ssp. japonica HOM05D005250 ORTHO05D006342 2.4e-08 63.5 221 24.9
CDE02G4654 Ceratophyllum demersum HOM05D005250 ORTHO05D006342 5.4e-08 62.4 228 23.2
Atru.chr11.1561 Acer truncatum HOM05D005250 ORTHO05D006342 7.0e-08 62.0 225 23.1
CAN.G263.5 Capsicum annuum HOM05D005250 ORTHO05D006342 9.2e-08 61.6 244 21.7
Gorai.005G147500 Gossypium raimondii HOM05D005250 ORTHO05D006342 1.2e-07 61.2 215 21.9
CiPaw.06G094800 Carya illinoinensis HOM05D005250 ORTHO05D006342 1.6e-07 60.8 227 24.2
Cre12.g527850 Chlamydomonas reinhardtii HOM05D006384 ORTHO05D007917 1.6e-07 60.8 92 33.7
ECA233G0908 Erigeron canadensis HOM05D005250 ORTHO05D006342 1.6e-07 60.8 221 22.6
Gohir.A03G106400 Gossypium hirsutum HOM05D005250 ORTHO05D006342 1.6e-07 60.8 215 21.9
Nn7g36775 Nelumbo nucifera HOM05D005250 ORTHO05D006342 1.6e-07 60.8 226 23.5
COL.COLO4_27807 Corchorus olitorius HOM05D005250 ORTHO05D002390 2.0e-07 60.5 215 21.9
Prupe.1G293300 Prunus persica HOM05D005250 ORTHO05D006342 3.5e-07 59.7 226 24.3
Sed0000568 Sechium edule HOM05D005250 ORTHO05D006342 4.5e-07 59.3 221 22.6
Sopen04g001290 Solanum pennellii HOM05D005250 ORTHO05D006342 7.8e-07 58.5 221 22.6
AagrBONN_evm.TU.Sc2ySwM_117.326 Anthoceros agrestis HOM05D005250 ORTHO05D006342 1.0e-06 58.2 221 25.3
Sc11g0002640 Simmondsia chinensis HOM05D005250 ORTHO05D006342 1.0e-06 58.2 226 21.7
Thecc.02G322900 Theobroma cacao HOM05D005250 ORTHO05D006342 1.0e-06 58.2 216 21.8
MSTRG.778 Avicennia marina HOM05D005250 ORTHO05D006342 1.3e-06 57.8 220 21.8
Lj2g0021011 Lotus japonicus HOM05D005250 ORTHO05D006342 1.3e-06 57.8 224 23.2
MCO04G452 Micromonas commoda HOM05D006384 ORTHO05D007917 1.3e-06 57.8 212 23.6
Zm00001eb333230 Zea mays HOM05D005250 ORTHO05D006342 1.3e-06 57.8 220 23.6
MD16G1056000 Malus domestica HOM05D005250 ORTHO05D006342 1.7e-06 57.4 222 23.9
Mapoly0009s0086 Marchantia polymorpha HOM05D005250 ORTHO05D006342 1.7e-06 57.4 227 23.3
PGR119G1921 Punica granatum HOM05D005250 ORTHO05D006342 1.7e-06 57.4 215 21.4
ATR1096G147 Amborella trichopoda HOM05D005250 ORTHO05D006342 2.3e-06 57.0 220 22.7
arahy.Tifrunner.gnm1.ann1.78R55B Arachis hypogaea HOM05D005250 ORTHO05D006342 2.3e-06 57.0 227 23.3
Potri.010G138300 Populus trichocarpa HOM05D005250 ORTHO05D006342 2.3e-06 57.0 201 23.4
Cc11_g11570 Coffea canephora HOM05D005250 ORTHO05D006342 2.9e-06 56.6 220 21.8
Lsat_1_v5_gn_8_35661 Lactuca sativa HOM05D005250 ORTHO05D006342 2.9e-06 56.6 221 21.7
Sed0024712 Sechium edule HOM05D005250 ORTHO05D006342 2.9e-06 56.6 215 21.4
Oeu048123.1 Olea europaea HOM05D005250 ORTHO05D006342 3.8e-06 56.2 201 22.9
TWI79G0919 Tripterygium wilfordii HOM05D005250 ORTHO05D006342 3.8e-06 56.2 215 20.9
DCAR_007208 Daucus carota HOM05D005250 ORTHO05D006342 5.0e-06 55.8 201 24.4
GSVIVG01010104001 Vitis vinifera HOM05D005250 ORTHO05D006342 5.0e-06 55.8 215 21.4
Gohir.D02G131600 Gossypium hirsutum HOM05D005250 ORTHO05D006342 6.6e-06 55.5 169 22.5


User provided reference genes

Program Settings