Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0248 Marchantia polymorpha HOM05D003971 ORTHO05D004762 0.0e+00 1077.0 610 100.0
Cc04_g05880 Coffea canephora HOM05D003971 ORTHO05D004762 9.4e-121 438.3 350 58.6
vmacro19182 Vaccinium macrocarpon HOM05D003971 ORTHO05D004762 1.6e-120 437.6 350 58.6
Cpa.g.sc13.168 Carica papaya HOM05D003971 ORTHO05D004762 1.0e-119 434.9 349 58.7
Atru.chr6.1916 Acer truncatum HOM05D003971 ORTHO05D004762 1.4e-119 434.5 350 57.4
Lj1g0015188 Lotus japonicus HOM05D003971 ORTHO05D004762 5.1e-119 432.6 350 59.1
Actinidia18301 Actinidia chinensis HOM05D003971 ORTHO05D004762 6.7e-119 432.2 350 58.3
CSS0040569 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 4.4e-118 429.5 349 57.9
PSO384G2792 Papaver somniferum HOM05D003971 ORTHO05D004762 5.7e-118 429.1 349 57.6
Lj9C486T6 Lonicera japonica HOM05D003971 ORTHO05D004762 7.4e-118 428.7 347 56.2
GSVIVG01008647001 Vitis vinifera HOM05D003971 ORTHO05D004762 7.4e-118 428.7 350 58.3
EL10Ac5g11286 Beta vulgaris HOM05D003971 ORTHO05D004762 1.3e-117 427.9 348 54.6
TAR622G0096 Trochodendron aralioides HOM05D003971 ORTHO05D004762 1.3e-117 427.9 349 57.6
Duzib084G0567 Durio zibethinus HOM05D003971 ORTHO05D004762 2.8e-117 426.8 347 56.8
Glyma.06G163900 Glycine max HOM05D003971 ORTHO05D004762 6.3e-117 425.6 349 56.4
MSTRG.22849 Avicennia marina HOM05D003971 ORTHO05D004762 1.8e-116 424.1 349 55.6
DCAR_021401 Daucus carota HOM05D003971 ORTHO05D004762 1.8e-116 424.1 349 56.2
AUR62009537 Chenopodium quinoa HOM05D003971 ORTHO05D004762 2.4e-116 423.7 348 54.3
Ciclev10031176m.g Citrus clementina HOM05D003971 ORTHO05D004762 2.4e-116 423.7 349 56.2
Eucgr.K00065 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.4e-116 423.7 351 58.4
Nitab4.5_0008403g0010 Nicotiana tabacum HOM05D003971 ORTHO05D004762 2.4e-116 423.7 373 53.9
Phvul.009G161300 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.4e-116 423.7 350 57.7
Solyc12g042200.2 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.4e-116 423.7 349 56.2
AUR62041701 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.1e-116 423.3 348 54.3
AUR62041703 Chenopodium quinoa HOM05D003971 ORTHO05D004762 3.1e-116 423.3 348 54.3
Nitab4.5_0002584g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 3.1e-116 423.3 373 54.2
PSO339G4968 Papaver somniferum HOM05D003971 ORTHO05D004762 3.1e-116 423.3 349 57.6
Hund02509 Selenicereus undatus HOM05D003971 ORTHO05D004762 3.1e-116 423.3 374 53.7
CsaV3_1G009920 Cucumis sativus L. HOM05D003971 ORTHO05D004762 5.3e-116 422.5 349 57.9
Peaxi162Scf01168g00013 Petunia axillaris HOM05D003971 ORTHO05D004762 7.0e-116 422.2 348 55.7
Lj5C87G6 Lonicera japonica HOM05D003971 ORTHO05D004762 9.1e-116 421.8 347 57.3
Sopen12g021240 Solanum pennellii HOM05D003971 ORTHO05D004762 9.1e-116 421.8 349 55.9
CiPaw.11G001000 Carya illinoinensis HOM05D003971 ORTHO05D004762 1.2e-115 421.4 347 56.8
Medtr3g098600 Medicago truncatula HOM05D003971 ORTHO05D004762 1.2e-115 421.4 352 57.7
Gohir.D03G110400 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.0e-115 420.6 347 57.3
Glyma.04G201300 Glycine max HOM05D003971 ORTHO05D004762 2.6e-115 420.2 347 55.9
MELO3C002386.2 Cucumis melo HOM05D003971 ORTHO05D004762 4.5e-115 419.5 373 55.5
Gohir.A03G056200 Gossypium hirsutum HOM05D003971 ORTHO05D004762 5.9e-115 419.1 347 57.1
Nn4g22021 Nelumbo nucifera HOM05D003971 ORTHO05D004762 7.7e-115 418.7 350 56.0
Pp3c11_18210 Physcomitrium patens HOM05D003971 ORTHO05D004762 7.7e-115 418.7 351 56.7
Psat5g055040 Pisum sativum HOM05D003971 ORTHO05D004762 7.7e-115 418.7 350 56.6
Oeu046606.1 Olea europaea HOM05D003971 ORTHO05D004762 1.0e-114 418.3 349 55.9
arahy.Tifrunner.gnm1.ann1.86AC6C Arachis hypogaea HOM05D003971 ORTHO05D004762 1.3e-114 417.9 348 56.9
Lalb_Chr11g0069181 Lupinus albus HOM05D003971 ORTHO05D004762 1.7e-114 417.5 350 57.4
Sed0008211 Sechium edule HOM05D003971 ORTHO05D004762 2.2e-114 417.2 348 56.3
arahy.Tifrunner.gnm1.ann1.9UH1TF Arachis hypogaea HOM05D003971 ORTHO05D004762 2.9e-114 416.8 351 56.4
AagrBONN_evm.TU.Sc2ySwM_117.1595 Anthoceros agrestis HOM05D003971 ORTHO05D004762 1.1e-113 414.8 352 53.7
Cfa018707 Carpinus fangiana HOM05D003971 ORTHO05D004762 1.5e-113 414.5 349 55.0
Ca_10878_v3 Cicer arietinum L. HOM05D003971 ORTHO05D004762 1.5e-113 414.5 349 56.7
Thecc.03G140300 Theobroma cacao HOM05D003971 ORTHO05D004762 3.2e-113 413.3 348 56.0
Gohir.D07G051000 Gossypium hirsutum HOM05D003971 ORTHO05D004762 7.2e-113 412.1 348 54.3
Aqoxy1G00170 Aquilegia oxysepala HOM05D003971 ORTHO05D004762 1.2e-112 411.4 349 55.9
Gohir.A07G046700 Gossypium hirsutum HOM05D003971 ORTHO05D004762 2.7e-112 410.2 348 53.4
MBI07_g41261_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 2.7e-112 410.2 348 56.0
TWI39G0398 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 2.7e-112 410.2 350 56.3
C03p19320 Brassica napus HOM05D003971 ORTHO05D004762 8.0e-112 408.7 347 55.9
Gorai.001G054100 Gossypium raimondii HOM05D003971 ORTHO05D004762 8.0e-112 408.7 348 54.0
BolC3t14318H Brassica oleracea HOM05D003971 ORTHO05D004762 1.0e-111 408.3 347 55.9
AL8G25160 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.4e-111 407.9 368 54.3
Thhalv10013209m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 1.4e-111 407.9 348 56.3
Zm00001eb210690 Zea mays HOM05D003971 ORTHO05D004762 1.4e-111 407.9 362 54.4
AT5G50970 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 1.8e-111 407.5 368 54.3
ATR0582G269 Amborella trichopoda HOM05D003971 ORTHO05D004762 3.0e-111 406.8 345 53.6
FvH4_5g09480 Fragaria vesca HOM05D003971 ORTHO05D004762 4.0e-111 406.4 349 55.9
FAN04G0277 Fragaria x ananassa HOM05D003971 ORTHO05D004762 4.0e-111 406.4 349 55.9
Gorai.003G116700 Gossypium raimondii HOM05D003971 ORTHO05D004762 4.0e-111 406.4 338 57.4
ClCG06G018370 Citrullus lanatus HOM05D003971 ORTHO05D004762 8.8e-111 405.2 349 54.7
HanXRQChr05g0155401 Helianthus annuus HOM05D003971 ORTHO05D004762 8.8e-111 405.2 598 41.8
A03p16430 Brassica napus HOM05D003971 ORTHO05D004762 1.1e-110 404.8 349 55.3
BraA03t10933Z Brassica rapa HOM05D003971 ORTHO05D004762 1.1e-110 404.8 349 55.3
FAN18G1571 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.1e-110 404.8 349 55.9
Potri.012G108100 Populus trichocarpa HOM05D003971 ORTHO05D004762 1.1e-110 404.8 350 55.1
Sp6g13140 Schrenkiella parvula HOM05D003971 ORTHO05D004762 1.5e-110 404.4 348 56.0
Migut.I00618 Erythranthe guttata HOM05D003971 ORTHO05D004762 2.0e-110 404.1 587 40.4
Carub.0008s1099 Capsella rubella HOM05D003971 ORTHO05D004762 2.6e-110 403.7 347 55.6
ClCG03G004040 Citrullus lanatus HOM05D003971 ORTHO05D004762 2.6e-110 403.7 362 54.4
FAN13G1049 Fragaria x ananassa HOM05D003971 ORTHO05D004762 3.3e-110 403.3 349 55.6
MD14G1147500 Malus domestica HOM05D003971 ORTHO05D004762 3.3e-110 403.3 348 54.3
PGSC0003DMG400014242 Solanum tuberosum HOM05D003971 ORTHO05D004762 3.3e-110 403.3 348 54.0
CANSAT56G1634 Cannabis sativa HOM05D003971 ORTHO05D004762 4.4e-110 402.9 348 54.3
PGR083G2644 Punica granatum HOM05D003971 ORTHO05D004762 4.4e-110 402.9 348 54.3
MD06G1130900 Malus domestica HOM05D003971 ORTHO05D004762 5.7e-110 402.5 348 54.3
Sabra12G0079300 Salix brachista HOM05D003971 ORTHO05D004762 7.5e-110 402.1 351 55.6
Sabra15G0126400 Salix brachista HOM05D003971 ORTHO05D004762 9.7e-110 401.7 348 54.3
Sed0022051 Sechium edule HOM05D003971 ORTHO05D004762 2.2e-109 400.6 352 54.0
CARHR257220 Cardamine hirsuta HOM05D003971 ORTHO05D004762 2.8e-109 400.2 352 56.2
ECA246G0638 Erigeron canadensis HOM05D003971 ORTHO05D004762 8.2e-109 398.7 592 40.0
Zm00001eb064630 Zea mays HOM05D003971 ORTHO05D004762 8.2e-109 398.7 345 54.8
Lsat_1_v5_gn_5_10121 Lactuca sativa HOM05D003971 ORTHO05D004762 1.8e-108 397.5 590 39.7
DCAR_016341 Daucus carota HOM05D003971 ORTHO05D004762 2.4e-108 397.1 347 53.9
MBI03_g13042_MAGBIO Magnolia biondii HOM05D003971 ORTHO05D004762 5.3e-108 396.0 348 53.2
FAN08G0744 Fragaria x ananassa HOM05D003971 ORTHO05D004762 1.6e-107 394.4 386 51.0
Medtr8g100180 Medicago truncatula HOM05D003971 ORTHO05D004762 1.6e-107 394.4 347 52.2
SEGI_34710 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 1.6e-107 394.4 305 58.4
CsaV3_1G000070 Cucumis sativus L. HOM05D003971 ORTHO05D004762 2.6e-107 393.7 349 53.3
Sopen03g037130 Solanum pennellii HOM05D003971 ORTHO05D004762 2.6e-107 393.7 348 53.4
VMungo1309G0830 Vigna mungo HOM05D003971 ORTHO05D004762 2.6e-107 393.7 298 61.4
MELO3C026159.2 Cucumis melo HOM05D003971 ORTHO05D004762 3.5e-107 393.3 349 53.3
Prupe.5G142100 Prunus persica HOM05D003971 ORTHO05D004762 3.5e-107 393.3 587 40.4
Hund10040 Selenicereus undatus HOM05D003971 ORTHO05D004762 1.7e-106 391.0 335 54.3
QL10p000509 Quercus lobata HOM05D003971 ORTHO05D004762 5.0e-106 389.4 434 45.9
Lj4g0027413 Lotus japonicus HOM05D003971 ORTHO05D004762 6.5e-106 389.0 350 50.3
Peaxi162Scf00314g00638 Petunia axillaris HOM05D003971 ORTHO05D004762 1.1e-105 388.3 338 54.4
RcHm_v2.0_Chr7g0188721 Rosa chinensis HOM05D003971 ORTHO05D004762 1.5e-105 387.9 328 56.4
TPR.G12938 Trifolium pratense HOM05D003971 ORTHO05D004762 1.9e-105 387.5 349 51.0
HPP92_028338 Vanilla planifolia HOM05D003971 ORTHO05D004762 3.2e-105 386.7 347 52.7
Rhsim08G0197300 Rhododendron simsii HOM05D003971 ORTHO05D004762 5.5e-105 386.0 419 48.2
THA.LOC104825039 Tarenaya hassleriana HOM05D003971 ORTHO05D004762 9.4e-105 385.2 587 41.2
TWI23G0486 Tripterygium wilfordii HOM05D003971 ORTHO05D004762 9.4e-105 385.2 351 53.0
Phvul.002G281600 Phaseolus vulgaris HOM05D003971 ORTHO05D004762 2.7e-104 383.6 352 50.0
Lsat_1_v5_gn_4_84501 Lactuca sativa HOM05D003971 ORTHO05D004762 4.7e-104 382.9 350 53.4
BcaC01g06062 Brassica carinata HOM05D003971 ORTHO05D004762 8.0e-104 382.1 347 53.3
Sc22g0003380 Simmondsia chinensis HOM05D003971 ORTHO05D004762 4.0e-103 379.8 351 51.3
VMungo0251G1950 Vigna mungo HOM05D000512 ORTHO05D000861 1.2e-102 378.3 320 52.8
unitig_21.g20335 Utricularia gibba HOM05D003971 ORTHO05D004762 4.4e-102 376.3 353 52.1
Haze_07098 Corylus avellana HOM05D003971 ORTHO05D004762 1.8e-95 354.4 403 46.2
SEGI_10226 Sequoiadendron giganteum HOM05D003971 ORTHO05D004762 3.0e-95 353.6 284 57.4
Ah.11g046910 Amaranthus hybridus HOM05D001469 ORTHO05D001648 1.5e-94 351.3 321 52.6
Manes.06G126801 Manihot esculenta HOM05D003971 ORTHO05D004762 2.0e-94 350.9 306 54.9
SHI34430 Sapria himalayana HOM05D003971 ORTHO05D004762 9.8e-94 348.6 369 46.6
Aa31LG3G7450 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.1e-92 343.6 266 59.0
Sp6g24460 Schrenkiella parvula HOM05D003971 ORTHO05D004762 5.4e-92 342.8 348 47.1
BcaB08g36556 Brassica carinata HOM05D003971 ORTHO05D004762 2.7e-91 340.5 348 46.3
BcaC04g19398 Brassica carinata HOM05D003971 ORTHO05D004762 5.9e-91 339.3 348 45.7
AL6G31450 Arabidopsis lyrata HOM05D003971 ORTHO05D004762 1.0e-90 338.6 323 49.2
Carub.0006s1829 Capsella rubella HOM05D003971 ORTHO05D004762 5.0e-90 336.3 323 49.2
C09p56130 Brassica napus HOM05D003971 ORTHO05D004762 6.6e-90 335.9 348 46.0
BolC9t58480H Brassica oleracea HOM05D003971 ORTHO05D004762 6.6e-90 335.9 348 46.0
A10p19810 Brassica napus HOM05D003971 ORTHO05D004762 1.5e-89 334.7 348 46.3
BraA10t44057Z Brassica rapa HOM05D003971 ORTHO05D004762 1.5e-89 334.7 348 46.3
Thhalv10013007m.g Eutrema salsugineum HOM05D003971 ORTHO05D004762 2.5e-89 334.0 349 46.1
AT5G19920 Arabidopsis thaliana HOM05D003971 ORTHO05D004762 3.3e-89 333.6 348 46.0
HanXRQChr17g0565911 Helianthus annuus HOM05D003971 ORTHO05D004762 4.0e-87 326.6 279 54.8
Aa31LG10G8100 Aethionema arabicum HOM05D003971 ORTHO05D004762 3.4e-86 323.6 363 44.1
CBR_g3752 Chara braunii HOM05D003971 ORTHO05D004762 1.1e-84 318.5 297 51.5
CARHR192940 Cardamine hirsuta HOM05D003971 ORTHO05D004762 1.4e-84 318.2 300 49.3
A02p05920 Brassica napus HOM05D003971 ORTHO05D004762 3.5e-83 313.5 324 46.6
BraA02t05544Z Brassica rapa HOM05D003971 ORTHO05D004762 3.5e-83 313.5 324 46.6
TPR.G25960 Trifolium pratense HOM05D003971 ORTHO05D004762 5.9e-83 312.8 350 46.3
BNapus_Darmor_BZH_scaffold_38p01950 Brassica napus HOM05D003971 ORTHO05D004762 7.8e-83 312.4 325 46.2
BolC2t06996H Brassica oleracea HOM05D003971 ORTHO05D004762 7.8e-83 312.4 325 46.2
Cc03_g15560 Coffea canephora HOM05D003971 ORTHO05D004762 2.3e-82 310.8 361 46.8
COL.COLO4_37254 Corchorus olitorius HOM05D003971 ORTHO05D004762 8.6e-82 308.9 244 59.4
HPP92_011657 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.2e-79 299.7 233 59.2
Nitab4.5_0000976g0020 Nicotiana tabacum HOM05D003971 ORTHO05D004762 4.4e-78 296.6 268 53.0
Eucgr.L01129 Eucalyptus grandis HOM05D003971 ORTHO05D004762 2.4e-76 290.8 208 64.9
Eucgr.L01124 Eucalyptus grandis HOM05D003971 ORTHO05D004762 7.8e-75 285.8 208 63.9
Potri.015G106300 Populus trichocarpa HOM05D003971 ORTHO05D004762 2.6e-70 270.8 245 52.7
Sc04g0000200 Simmondsia chinensis HOM05D003971 ORTHO05D004762 3.7e-69 266.9 246 49.2
Solyc03g118220.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 6.6e-66 256.1 243 50.2
Actinidia25522 Actinidia chinensis HOM05D000512 ORTHO05D004762 8.6e-66 255.8 178 66.3
RcHm_v2.0_Chr1g0373351 Rosa chinensis HOM05D003971 ORTHO05D004762 2.3e-63 247.7 230 50.9
CDE02G0369 Ceratophyllum demersum HOM05D003971 ORTHO05D004762 1.8e-47 194.9 146 61.0
Lalb_Chr12g0202501 Lupinus albus HOM05D003971 ORTHO05D004762 4.8e-40 170.2 163 50.3
SMO334G0050 Selaginella moellendorffii HOM05D003971 ORTHO05D004762 1.4e-39 168.7 249 37.3
SalBow7G2108 Salvia bowleyana HOM05D003971 ORTHO05D004762 4.6e-35 153.7 130 54.6
SGA_v2.0_scaffold74G24722 Striga asiatica HOM05D003971 ORTHO05D004762 5.6e-33 146.7 113 58.4
Solyc03g118210.3 Solanum lycopersicum HOM05D003971 ORTHO05D004762 2.1e-32 144.8 104 63.5
Oeu012846.1 Olea europaea HOM05D003971 ORTHO05D004433 1.1e-28 132.5 138 49.3
Hma1.2p1_0664F.1_g199006 Hydrangea macrophylla HOM05D003971 ORTHO05D004762 3.1e-23 114.4 121 39.7
HPP92_011707 Vanilla planifolia HOM05D003971 ORTHO05D004762 5.3e-23 113.6 140 40.0
CSS0006697 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 2.0e-22 111.7 83 61.4
CSS0040784 Camellia sinensis var. sinensis HOM05D003971 ORTHO05D004762 1.1e-20 105.9 79 62.0
Lalb_Chr12g0202511 Lupinus albus HOM05D003971 ORTHO05D004762 5.5e-20 103.6 97 45.4
Dinv13722 Davidia involucrata HOM05D000475 ORTHO05D000343 4.6e-19 100.5 67 70.1
Os08g0511500 Oryza sativa ssp. japonica HOM05D003971 ORTHO05D004762 5.1e-18 97.1 93 49.5
Dinv23224 Davidia involucrata HOM05D000475 ORTHO05D000343 2.8e-16 91.3 65 66.2
Dinv13723 Davidia involucrata HOM05D003971 ORTHO05D004762 2.4e-15 88.2 114 38.6
Oeu061253.1 Olea europaea HOM05D003971 ORTHO05D004762 2.4e-15 88.2 379 25.6
Os11g0660300 Oryza sativa ssp. japonica HOM05D005151 ORTHO05D006322 8.2e-08 63.2 244 26.6
Zm00001eb165440 Zea mays HOM05D005151 ORTHO05D006322 5.3e-07 60.5 244 26.2
Dinv23223 Davidia involucrata HOM05D003971 ORTHO05D004762 6.9e-07 60.1 69 42.0
Solyc12g009030.2 Solanum lycopersicum HOM05D005151 ORTHO05D006322 1.5e-06 58.9 285 22.8


User provided reference genes

Program Settings