Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0230 Marchantia polymorpha HOM05D005867 ORTHO05D254737 1.1e-110 403.3 202 100.0
Mapoly0061s0125 Marchantia polymorpha HOM05D005867 ORTHO05D007273 2.3e-47 193.0 159 66.0
SMO147G0033 Selaginella moellendorffii HOM05D005867 ORTHO05D007273 3.1e-28 129.4 155 43.2
CARHR200400 Cardamine hirsuta HOM05D005867 ORTHO05D007273 8.4e-26 121.3 158 38.0
A02p01670 Brassica napus HOM05D005867 ORTHO05D007273 1.4e-25 120.6 158 38.0
BolC2t06533H Brassica oleracea HOM05D005867 ORTHO05D007273 1.4e-25 120.6 158 38.0
BraA02t05146Z Brassica rapa HOM05D005867 ORTHO05D007273 1.4e-25 120.6 158 38.0
AL6G23670 Arabidopsis lyrata HOM05D005867 ORTHO05D007273 1.9e-25 120.2 158 38.0
AT5G13070 Arabidopsis thaliana HOM05D005867 ORTHO05D007273 2.4e-25 119.8 158 38.0
C02p05880 Brassica napus HOM05D005867 ORTHO05D007273 2.4e-25 119.8 158 37.3
Actinidia16309 Actinidia chinensis HOM05D005867 ORTHO05D007273 3.2e-25 119.4 154 39.0
BcaNung01174 Brassica carinata HOM05D005867 ORTHO05D007273 3.2e-25 119.4 158 37.3
BcaNung01858 Brassica carinata HOM05D005867 ORTHO05D007273 3.2e-25 119.4 158 37.3
DCAR_002056 Daucus carota HOM05D005867 ORTHO05D007273 3.2e-25 119.4 154 39.6
Dinv36283 Davidia involucrata HOM05D005867 ORTHO05D007273 3.2e-25 119.4 157 38.2
Carub.0006s1124 Capsella rubella HOM05D005867 ORTHO05D007273 5.4e-25 118.6 158 37.3
Cc01_g01980 Coffea canephora HOM05D005867 ORTHO05D007273 5.4e-25 118.6 159 37.7
Thhalv10014788m.g Eutrema salsugineum HOM05D005867 ORTHO05D007273 5.4e-25 118.6 158 37.3
Sp6g30910 Schrenkiella parvula HOM05D005867 ORTHO05D007273 5.4e-25 118.6 158 37.3
BcaC04g19155 Brassica carinata HOM05D002203 ORTHO05D007273 7.1e-25 118.2 158 37.3
ECA238G1591 Erigeron canadensis HOM05D005867 ORTHO05D007273 9.3e-25 117.9 156 38.5
Rhsim13G0224100 Rhododendron simsii HOM05D005867 ORTHO05D007273 1.2e-24 117.5 157 37.6
BraA10t44575Z Brassica rapa HOM05D005867 ORTHO05D007273 1.6e-24 117.1 158 36.7
ATR0605G298 Amborella trichopoda HOM05D005867 ORTHO05D007273 2.1e-24 116.7 156 37.2
A10p25130 Brassica napus HOM05D005867 ORTHO05D007273 2.1e-24 116.7 158 36.7
Aa31LG3G14590 Aethionema arabicum HOM05D005867 ORTHO05D007273 2.7e-24 116.3 157 35.7
C09p64030 Brassica napus HOM05D005867 ORTHO05D007273 2.7e-24 116.3 158 36.7
BolC9t59241H Brassica oleracea HOM05D005867 ORTHO05D007273 2.7e-24 116.3 158 36.7
EL10Ac4g10299 Beta vulgaris HOM05D005867 ORTHO05D007273 3.5e-24 115.9 157 37.6
QL01p005337 Quercus lobata HOM05D005867 ORTHO05D007273 4.6e-24 115.5 154 37.7
CSS0048722 Camellia sinensis var. sinensis HOM05D005867 ORTHO05D007273 6.0e-24 115.2 154 39.0
SHI29727 Sapria himalayana HOM05D005867 ORTHO05D007273 6.0e-24 115.2 157 37.6
PGSC0003DMG400013588 Solanum tuberosum HOM05D005867 ORTHO05D007273 1.0e-23 114.4 157 36.3
THA.LOC104804975 Tarenaya hassleriana HOM05D005867 ORTHO05D007273 1.0e-23 114.4 157 35.0
AUR62000096 Chenopodium quinoa HOM05D005867 ORTHO05D007273 1.3e-23 114.0 157 36.9
AUR62019269 Chenopodium quinoa HOM05D005867 ORTHO05D007273 1.3e-23 114.0 157 36.9
Thecc.09G227900 Theobroma cacao HOM05D005867 ORTHO05D007273 1.8e-23 113.6 157 35.0
Dinv08036 Davidia involucrata HOM05D005867 ORTHO05D007273 2.3e-23 113.2 147 39.5
Peaxi162Scf00029g00326 Petunia axillaris HOM05D005867 ORTHO05D007273 2.3e-23 113.2 154 37.0
Gohir.A05G068300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 3.0e-23 112.8 157 35.7
PGR119G1510 Punica granatum HOM05D005867 ORTHO05D007273 3.0e-23 112.8 154 37.7
COL.COLO4_24845 Corchorus olitorius HOM05D005867 ORTHO05D007273 3.9e-23 112.5 154 35.1
MELO3C015200.2 Cucumis melo HOM05D005867 ORTHO05D007273 3.9e-23 112.5 155 35.5
Gorai.009G072300 Gossypium raimondii HOM05D005867 ORTHO05D007273 3.9e-23 112.5 157 35.7
Manes.06G166900 Manihot esculenta HOM05D005867 ORTHO05D007273 3.9e-23 112.5 154 37.0
Sed0004394 Sechium edule HOM05D005867 ORTHO05D007273 3.9e-23 112.5 157 35.0
Solyc11g061760.3 Solanum lycopersicum HOM05D005867 ORTHO05D007273 3.9e-23 112.5 154 36.4
Sopen11g023660 Solanum pennellii HOM05D005867 ORTHO05D007273 3.9e-23 112.5 154 36.4
Aqoxy1G00241 Aquilegia oxysepala HOM05D005867 ORTHO05D007273 5.1e-23 112.1 156 34.6
CANSAT54G1708 Cannabis sativa HOM05D005867 ORTHO05D007273 5.1e-23 112.1 157 35.0
Cpa.g.sc84.80 Carica papaya HOM05D005867 ORTHO05D007273 6.7e-23 111.7 157 33.8
Eucgr.J00791 Eucalyptus grandis HOM05D005867 ORTHO05D007273 6.7e-23 111.7 154 35.1
Gohir.D05G071300 Gossypium hirsutum HOM05D005867 ORTHO05D007273 6.7e-23 111.7 157 35.7
ClCG03G013300 Citrullus lanatus HOM05D005867 ORTHO05D007273 8.7e-23 111.3 155 35.5
Migut.N02304 Erythranthe guttata HOM05D005867 ORTHO05D007273 8.7e-23 111.3 159 35.8
Lsat_1_v5_gn_2_100781 Lactuca sativa HOM05D005867 ORTHO05D007273 8.7e-23 111.3 156 36.5
GSVIVG01025306001 Vitis vinifera HOM05D005867 ORTHO05D007273 8.7e-23 111.3 154 37.0
CsaV3_1G042730 Cucumis sativus L. HOM05D005867 ORTHO05D007273 1.1e-22 110.9 155 34.8
HanXRQChr02g0036871 Helianthus annuus HOM05D005867 ORTHO05D007273 1.1e-22 110.9 156 35.9
Nn2g15416 Nelumbo nucifera HOM05D005867 ORTHO05D007273 1.5e-22 110.5 157 35.7
Cfa009733 Carpinus fangiana HOM05D005867 ORTHO05D007273 1.9e-22 110.2 157 35.0
CiPaw.13G163600 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.9e-22 110.2 157 36.3
CBR_g20418 Chara braunii HOM05D005867 ORTHO05D007273 1.9e-22 110.2 152 41.4
Pp3c14_26010 Physcomitrium patens HOM05D005867 ORTHO05D007273 1.9e-22 110.2 156 39.7
MBI17_g30524_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 3.3e-22 109.4 147 38.1
Oeu035742.1 Olea europaea HOM05D005867 ORTHO05D007273 3.3e-22 109.4 154 35.7
TAR633G2552 Trochodendron aralioides HOM05D005867 ORTHO05D007273 3.3e-22 109.4 157 35.7
Ah.04g161870 Amaranthus hybridus HOM05D005867 ORTHO05D007273 4.3e-22 109.0 154 35.7
Ah.06g193630 Amaranthus hybridus HOM05D005867 ORTHO05D007273 4.3e-22 109.0 154 35.7
Duzib168G0296 Durio zibethinus HOM05D005867 ORTHO05D007273 4.3e-22 109.0 157 34.4
HanXRQChr14g0453051 Helianthus annuus HOM05D005867 ORTHO05D007273 4.3e-22 109.0 156 34.6
Sabra01G0013100 Salix brachista HOM05D005867 ORTHO05D007273 4.3e-22 109.0 154 35.1
TAR636G0304 Trochodendron aralioides HOM05D005867 ORTHO05D007273 4.3e-22 109.0 157 35.0
VMungo1080G0295 Vigna mungo HOM05D005867 ORTHO05D007273 4.3e-22 109.0 157 34.4
FAN25G0812 Fragaria x ananassa HOM05D005867 ORTHO05D007273 5.6e-22 108.6 157 36.3
Nitab4.5_0008868g0020 Nicotiana tabacum HOM05D005867 ORTHO05D007273 5.6e-22 108.6 157 34.4
PSO384G4422 Papaver somniferum HOM05D005867 ORTHO05D007273 5.6e-22 108.6 154 35.7
Phvul.L010243 Phaseolus vulgaris HOM05D005867 ORTHO05D007273 5.6e-22 108.6 157 33.8
Nitab4.5_0002766g0030 Nicotiana tabacum HOM05D005867 ORTHO05D007273 7.4e-22 108.2 157 33.8
PGSC0003DMG400023838 Solanum tuberosum HOM05D005867 ORTHO05D007273 7.4e-22 108.2 154 36.4
Ciclev10016610m.g Citrus clementina HOM05D005867 ORTHO05D007273 9.6e-22 107.8 154 35.1
Haze_23087 Corylus avellana HOM05D005867 ORTHO05D007273 9.6e-22 107.8 147 36.1
Glyma.15G033100 Glycine max HOM05D005867 ORTHO05D007273 9.6e-22 107.8 157 33.8
MSTRG.21396 Avicennia marina HOM05D005867 ORTHO05D007273 1.3e-21 107.5 154 35.7
FvH4_3g43090 Fragaria vesca HOM05D005867 ORTHO05D007273 1.3e-21 107.5 157 35.7
FAN11G1123 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.3e-21 107.5 157 35.7
FAN16G1279 Fragaria x ananassa HOM05D005867 ORTHO05D007273 1.3e-21 107.5 157 35.7
Nitab4.5_0008647g0010 Nicotiana tabacum HOM05D005867 ORTHO05D007273 1.3e-21 107.5 154 35.1
Sopen12g034670 Solanum pennellii HOM05D005867 ORTHO05D007273 1.3e-21 107.5 154 36.4
SalBow4G1382 Salvia bowleyana HOM05D005867 ORTHO05D007273 2.1e-21 106.7 154 35.7
Solyc12g100050.2 Solanum lycopersicum HOM05D005867 ORTHO05D007273 2.1e-21 106.7 154 36.4
FAN21G2433 Fragaria x ananassa HOM05D005867 ORTHO05D007273 2.8e-21 106.3 157 35.7
Nitab4.5_0001925g0100 Nicotiana tabacum HOM05D005867 ORTHO05D007273 2.8e-21 106.3 154 35.1
SGA_v2.0_scaffold8G04610 Striga asiatica HOM05D005867 ORTHO05D007273 2.8e-21 106.3 154 35.1
TWI60G1455 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 3.7e-21 105.9 157 33.1
RcHm_v2.0_Chr5g0077191 Rosa chinensis HOM05D005867 ORTHO05D007273 6.2e-21 105.1 154 35.1
SalBow4G0034 Salvia bowleyana HOM05D005867 ORTHO05D007273 6.2e-21 105.1 154 35.1
MSTRG.17581 Avicennia marina HOM05D005867 ORTHO05D007273 1.1e-20 104.4 154 36.4
Oeu052048.1 Olea europaea HOM05D005867 ORTHO05D007273 1.1e-20 104.4 154 35.1
PSO339G4569 Papaver somniferum HOM05D005867 ORTHO05D007273 1.1e-20 104.4 154 34.4
Potri.001G018500 Populus trichocarpa HOM05D005867 ORTHO05D007273 1.1e-20 104.4 154 33.8
Atru.chr3.2589 Acer truncatum HOM05D005867 ORTHO05D007273 1.4e-20 104.0 157 35.0
Migut.D00576 Erythranthe guttata HOM05D005867 ORTHO05D007273 1.4e-20 104.0 155 33.5
Prupe.6G023200 Prunus persica HOM05D005867 ORTHO05D007273 1.8e-20 103.6 157 33.8
Sc06g0004490 Simmondsia chinensis HOM05D005867 ORTHO05D007273 1.8e-20 103.6 157 35.0
CAN.G575.64 Capsicum annuum HOM05D005867 ORTHO05D007273 2.4e-20 103.2 154 34.4
Lalb_Chr14g0372181 Lupinus albus HOM05D005867 ORTHO05D007273 3.1e-20 102.8 155 32.9
MD11G1028900 Malus domestica HOM05D005867 ORTHO05D007273 4.0e-20 102.4 154 34.4
TWI34G0922 Tripterygium wilfordii HOM05D005867 ORTHO05D007273 4.0e-20 102.4 146 34.2
MD03G1024000 Malus domestica HOM05D005867 ORTHO05D007273 5.3e-20 102.1 154 34.4
unitig_21.g20645 Utricularia gibba HOM05D005867 ORTHO05D007273 6.9e-20 101.7 157 35.0
Cfa009734 Carpinus fangiana HOM05D005867 ORTHO05D007273 9.0e-20 101.3 154 33.1
Pp3c1_37310 Physcomitrium patens HOM05D005867 ORTHO05D007273 9.0e-20 101.3 149 39.6
arahy.Tifrunner.gnm1.ann1.2D2P15 Arachis hypogaea HOM05D005867 ORTHO05D007273 2.6e-19 99.8 155 32.3
arahy.Tifrunner.gnm1.ann1.V9D8IR Arachis hypogaea HOM05D005867 ORTHO05D007273 2.6e-19 99.8 155 32.3
Lj3g0003495 Lotus japonicus HOM05D005867 ORTHO05D007273 1.0e-18 97.8 156 34.6
TPR.G6870 Trifolium pratense HOM05D005867 ORTHO05D007273 2.2e-18 96.7 156 34.0
Ca_01285_v3 Cicer arietinum L. HOM05D005867 ORTHO05D007273 2.9e-18 96.3 156 34.6
Psat5g287440 Pisum sativum HOM05D005867 ORTHO05D007273 3.8e-18 95.9 158 34.2
Medtr1g058050 Medicago truncatula HOM05D005867 ORTHO05D007273 2.5e-17 93.2 156 32.7
Medtr2g017985 Medicago truncatula HOM05D005867 ORTHO05D007273 9.3e-17 91.3 156 32.7
Medtr2g098170 Medicago truncatula HOM05D005867 ORTHO05D007273 1.2e-16 90.9 156 32.7
Medtr8g096810 Medicago truncatula HOM05D005867 ORTHO05D007273 1.2e-16 90.9 156 32.1
Duzib150G0087 Durio zibethinus HOM05D005867 ORTHO05D007273 6.0e-16 88.6 159 31.4
CiPaw.13G163500 Carya illinoinensis HOM05D005867 ORTHO05D007273 1.8e-15 87.0 155 31.6
QL01p005297 Quercus lobata HOM05D005867 ORTHO05D007273 6.7e-15 85.1 154 31.2
Os02g0717900 Oryza sativa ssp. japonica HOM05D005867 ORTHO05D007273 1.6e-13 80.5 164 31.7
MBI01_g27622_MAGBIO Magnolia biondii HOM05D005867 ORTHO05D007273 2.2e-10 70.1 146 30.8
Lj2P647T17 Lonicera japonica HOM05D005867 ORTHO05D007273 6.7e-07 58.5 89 36.0


User provided reference genes

Program Settings