Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0209 Marchantia polymorpha HOM05D005411 ORTHO05D006463 1.5e-96 356.3 196 100.0
Pp3c11_2200 Physcomitrium patens HOM05D005411 ORTHO05D006463 2.5e-22 109.8 188 42.6
SEGI_09083 Sequoiadendron giganteum HOM05D005411 ORTHO05D006463 1.0e-20 104.4 101 57.4
Nitab4.5_0013184g0010 Nicotiana tabacum HOM05D005411 ORTHO05D006463 1.3e-20 104.0 169 37.9
ATR0680G335 Amborella trichopoda HOM05D005411 ORTHO05D006463 1.8e-20 103.6 103 52.4
GSVIVG01019751001 Vitis vinifera HOM05D005411 ORTHO05D006463 2.3e-20 103.2 119 48.7
Gorai.003G158500 Gossypium raimondii HOM05D005411 ORTHO05D006463 3.0e-20 102.8 103 49.5
Peaxi162Scf00119g00941 Petunia axillaris HOM05D005411 ORTHO05D006463 3.0e-20 102.8 103 50.5
CAN.G774.50 Capsicum annuum HOM05D005411 ORTHO05D006463 3.9e-20 102.4 165 39.4
Eucgr.H02261 Eucalyptus grandis HOM05D005411 ORTHO05D006463 5.1e-20 102.1 143 41.3
Actinidia14564 Actinidia chinensis HOM05D005411 ORTHO05D006463 6.7e-20 101.7 141 42.6
Nitab4.5_0001615g0100 Nicotiana tabacum HOM05D005411 ORTHO05D006463 6.7e-20 101.7 171 36.3
Gohir.A03G016600 Gossypium hirsutum HOM05D005411 ORTHO05D006463 8.7e-20 101.3 103 48.5
Solyc08g081130.4 Solanum lycopersicum HOM05D005411 ORTHO05D006463 8.7e-20 101.3 103 49.5
Sopen08g029430 Solanum pennellii HOM05D005411 ORTHO05D006463 8.7e-20 101.3 103 49.5
PGSC0003DMG403012339 Solanum tuberosum HOM05D005411 ORTHO05D006463 8.7e-20 101.3 103 49.5
MBI18_g42863_MAGBIO Magnolia biondii HOM05D005411 ORTHO05D006463 1.1e-19 100.9 99 52.5
Actinidia02004 Actinidia chinensis HOM05D005411 ORTHO05D006463 1.5e-19 100.5 143 41.3
Eucgr.L02732 Eucalyptus grandis HOM05D005411 ORTHO05D006463 1.5e-19 100.5 143 40.6
Cc08_g14780 Coffea canephora HOM05D005411 ORTHO05D006463 5.7e-19 98.6 147 39.5
Hma1.2p1_0377F.1_g139300 Hydrangea macrophylla HOM05D005411 ORTHO05D006463 5.7e-19 98.6 99 51.5
FvH4_5g02510 Fragaria vesca HOM05D005411 ORTHO05D006463 7.4e-19 98.2 99 51.5
Oeu011043.2 Olea europaea HOM05D005411 ORTHO05D006463 7.4e-19 98.2 138 40.6
QL12p032900 Quercus lobata HOM05D005411 ORTHO05D006463 2.2e-18 96.7 103 46.6
RcHm_v2.0_Chr7g0197541 Rosa chinensis HOM05D005411 ORTHO05D006463 2.2e-18 96.7 99 50.5
CsaV3_4G005950 Cucumis sativus L. HOM05D005411 ORTHO05D006463 2.8e-18 96.3 104 45.2
MD06G1084200 Malus domestica HOM05D005411 ORTHO05D006463 2.8e-18 96.3 113 46.0
Carub.0007s1784 Capsella rubella HOM05D005411 ORTHO05D006463 3.7e-18 95.9 120 43.3
Manes.02G019300 Manihot esculenta HOM05D005411 ORTHO05D006463 3.7e-18 95.9 99 48.5
CiPaw.11G134900 Carya illinoinensis HOM05D005411 ORTHO05D006463 4.8e-18 95.5 99 48.5
PGR042G1580 Punica granatum HOM05D005411 ORTHO05D006463 4.8e-18 95.5 99 47.5
Ciclev10022634m.g Citrus clementina HOM05D005411 ORTHO05D006463 6.3e-18 95.1 99 48.5
AL7G30140 Arabidopsis lyrata HOM05D005411 ORTHO05D006463 8.2e-18 94.7 120 43.3
BcaC09g51012 Brassica carinata HOM05D005411 ORTHO05D006463 1.1e-17 94.4 143 39.2
BolC1t01733H Brassica oleracea HOM05D005411 ORTHO05D006463 1.1e-17 94.4 143 39.2
ClCG07G008090 Citrullus lanatus HOM05D005411 ORTHO05D006463 1.4e-17 94.0 100 46.0
CSS0034062 Camellia sinensis var. sinensis HOM05D005411 ORTHO05D006463 1.8e-17 93.6 99 47.5
Dinv38939 Davidia involucrata HOM05D005411 ORTHO05D006463 1.8e-17 93.6 103 47.6
Dinv38942 Davidia involucrata HOM05D005411 ORTHO05D006463 1.8e-17 93.6 103 47.6
Thhalv10026496m.g Eutrema salsugineum HOM05D005411 ORTHO05D006463 1.8e-17 93.6 97 48.5
THA.LOC104814574 Tarenaya hassleriana HOM05D005411 ORTHO05D006463 2.4e-17 93.2 97 47.4
AT4G23330 Arabidopsis thaliana HOM05D005411 ORTHO05D006463 3.1e-17 92.8 135 39.3
A01p14570 Brassica napus HOM05D005411 ORTHO05D006463 3.1e-17 92.8 138 39.9
BraA01t01399Z Brassica rapa HOM05D005411 ORTHO05D006463 3.1e-17 92.8 138 39.9
PSO782G3895 Papaver somniferum HOM05D005411 ORTHO05D006463 3.1e-17 92.8 99 49.5
CARHR230670 Cardamine hirsuta HOM05D005411 ORTHO05D006463 5.3e-17 92.0 119 41.2
Lj8E221T1 Lonicera japonica HOM05D005411 ORTHO05D006463 5.3e-17 92.0 99 46.5
TWI60G1258 Tripterygium wilfordii HOM05D005411 ORTHO05D006463 5.3e-17 92.0 99 47.5
PSO478G4730 Papaver somniferum HOM05D005411 ORTHO05D006463 6.9e-17 91.7 99 48.5
Migut.A00759 Erythranthe guttata HOM05D005411 ORTHO05D006463 9.0e-17 91.3 165 34.5
Sed0017646 Sechium edule HOM05D005411 ORTHO05D006463 9.0e-17 91.3 100 45.0
BcaNung01456 Brassica carinata HOM05D005411 ORTHO05D006463 1.2e-16 90.9 97 48.5
C07p52580 Brassica napus HOM05D000022 ORTHO05D000071 1.2e-16 90.9 97 48.5
BolC7t45755H Brassica oleracea HOM05D005411 ORTHO05D006463 1.2e-16 90.9 97 48.5
Aqoxy7G00317 Aquilegia oxysepala HOM05D005411 ORTHO05D006463 1.5e-16 90.5 85 54.1
MD14G1105400 Malus domestica HOM05D005411 ORTHO05D006463 1.5e-16 90.5 99 48.5
Phvul.002G289800 Phaseolus vulgaris HOM05D005411 ORTHO05D006463 1.5e-16 90.5 99 45.5
Prupe.5G100600 Prunus persica HOM05D005411 ORTHO05D006463 1.5e-16 90.5 99 47.5
BraA03t14482Z Brassica rapa HOM05D000022 ORTHO05D000071 2.0e-16 90.1 97 47.4
SalBow4G3209 Salvia bowleyana HOM05D005411 ORTHO05D006463 2.0e-16 90.1 103 43.7
A03p54210 Brassica napus HOM05D005411 ORTHO05D006463 2.6e-16 89.7 118 41.5
CANSAT78G0141 Cannabis sativa HOM05D005411 ORTHO05D006463 2.6e-16 89.7 103 42.7
ECA233G5385 Erigeron canadensis HOM05D005411 ORTHO05D006463 2.6e-16 89.7 97 47.4
TAR374G0701 Trochodendron aralioides HOM05D005411 ORTHO05D006463 3.4e-16 89.4 81 58.0
HanXRQChr13g0394241 Helianthus annuus HOM05D005411 ORTHO05D006463 4.5e-16 89.0 103 42.7
Nn1g01526 Nelumbo nucifera HOM05D005411 ORTHO05D006463 4.5e-16 89.0 103 45.6
Thecc.03G279100 Theobroma cacao HOM05D005411 ORTHO05D006463 4.5e-16 89.0 90 51.1
BcaC03g18356 Brassica carinata HOM05D005411 ORTHO05D006463 5.9e-16 88.6 140 37.9
C02p64340 Brassica napus HOM05D005411 ORTHO05D006463 5.9e-16 88.6 140 37.9
Lalb_Chr09g0332851 Lupinus albus HOM05D005411 ORTHO05D006463 5.9e-16 88.6 99 44.4
unitig_46.g18551 Utricularia gibba HOM05D005411 ORTHO05D006463 5.9e-16 88.6 118 39.8
Cfa012226 Carpinus fangiana HOM05D005411 ORTHO05D006463 7.7e-16 88.2 81 55.6
AagrBONN_evm.TU.Sc2ySwM_369.479 Anthoceros agrestis HOM05D005411 ORTHO05D006463 1.0e-15 87.8 89 52.8
BcaNung03266 Brassica carinata HOM05D005411 ORTHO05D006463 1.0e-15 87.8 97 47.4
FAN13G2772 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.3e-15 87.4 81 56.8
Os07g0483400 Oryza sativa ssp. japonica HOM05D005411 ORTHO05D006463 1.3e-15 87.4 109 42.2
Ca_17530_v3 Cicer arietinum L. HOM05D005411 ORTHO05D006463 1.7e-15 87.0 99 42.4
Potri.001G103800 Populus trichocarpa HOM05D005411 ORTHO05D006463 1.7e-15 87.0 116 38.8
MELO3C016353.2 Cucumis melo HOM05D005411 ORTHO05D006463 2.2e-15 86.7 85 50.6
Lj4g0004308 Lotus japonicus HOM05D005411 ORTHO05D006463 2.2e-15 86.7 99 43.4
FAN18G0348 Fragaria x ananassa HOM05D005411 ORTHO05D006463 2.9e-15 86.3 81 55.6
Medtr8g098255 Medicago truncatula HOM05D005411 ORTHO05D006463 2.9e-15 86.3 103 39.8
SGA_v2.0_scaffold173G39183 Striga asiatica HOM05D005411 ORTHO05D006463 2.9e-15 86.3 102 46.1
TPR.G12871 Trifolium pratense HOM05D005411 ORTHO05D006463 2.9e-15 86.3 103 39.8
vmacro11335 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.9e-15 86.3 121 41.3
vmacro22820 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 2.9e-15 86.3 121 41.3
Aa31LG9G10800 Aethionema arabicum HOM05D005411 ORTHO05D006463 3.8e-15 85.9 100 49.0
FAN04G3034 Fragaria x ananassa HOM05D005411 ORTHO05D006463 3.8e-15 85.9 81 55.6
Lsat_1_v5_gn_6_6580 Lactuca sativa HOM05D005411 ORTHO05D006463 3.8e-15 85.9 146 36.3
vmacro13959 Vaccinium macrocarpon HOM05D005411 ORTHO05D006463 8.5e-15 84.7 111 45.9
Rhsim07G0090400 Rhododendron simsii HOM05D005411 ORTHO05D006463 1.1e-14 84.3 128 43.8
FAN08G0497 Fragaria x ananassa HOM05D005411 ORTHO05D006463 1.9e-14 83.6 81 55.6
CiPaw.12G092800 Carya illinoinensis HOM05D005411 ORTHO05D006463 2.5e-14 83.2 103 43.7
Psat7g033000 Pisum sativum HOM05D005411 ORTHO05D006463 2.5e-14 83.2 118 37.3
Hund16039 Selenicereus undatus HOM05D005411 ORTHO05D006463 2.5e-14 83.2 81 51.9
MSTRG.25610 Avicennia marina HOM05D005411 ORTHO05D006463 3.2e-14 82.8 165 32.1
AUR62022799 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.2e-14 82.8 121 42.1
Zm00001eb104990 Zea mays HOM05D005411 ORTHO05D006463 7.2e-14 81.6 81 50.6
arahy.Tifrunner.gnm1.ann1.FJ1DNZ Arachis hypogaea HOM05D005411 ORTHO05D006463 9.4e-14 81.3 85 45.9
arahy.Tifrunner.gnm1.ann1.P2DUDW Arachis hypogaea HOM05D005411 ORTHO05D006463 9.4e-14 81.3 85 45.9
Glyma.05G208200 Glycine max HOM05D005411 ORTHO05D006463 9.4e-14 81.3 84 48.8
Duzib205G1808 Durio zibethinus HOM05D005411 ORTHO05D006463 2.7e-13 79.7 73 49.3
Sabra01G0078400 Salix brachista HOM05D005411 ORTHO05D006463 3.6e-13 79.3 110 40.0
CDE11G0686 Ceratophyllum demersum HOM05D003133 ORTHO05D006463 5.1e-12 75.5 153 34.6
VMungo0251G3187 Vigna mungo HOM05D005411 ORTHO05D006463 6.7e-12 75.1 86 45.3
C01p18020 Brassica napus HOM05D005411 ORTHO05D006463 8.2e-10 68.2 110 39.1
SMO329G0027 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.1e-09 67.8 75 49.3
SMO358G0504 Selaginella moellendorffii HOM05D005411 ORTHO05D006463 1.1e-09 67.8 75 49.3
Gohir.D03G151300 Gossypium hirsutum HOM05D005411 ORTHO05D006463 1.8e-09 67.0 70 47.1
BcaNung00977 Brassica carinata HOM05D005411 ORTHO05D006463 2.4e-09 66.6 59 49.2
Duzib084G0828 Durio zibethinus HOM05D005411 ORTHO05D006463 4.1e-09 65.9 60 51.7
Sc01g0009600 Simmondsia chinensis HOM05D005411 ORTHO05D006463 9.1e-09 64.7 67 49.3
BolC5t34770H Brassica oleracea HOM05D005411 ORTHO05D006463 1.5e-08 63.9 82 40.2
EL10Ac2g04672 Beta vulgaris HOM05D005411 ORTHO05D006463 3.4e-08 62.8 71 43.7
CDE09G0994 Ceratophyllum demersum HOM05D005411 ORTHO05D006463 7.7e-08 61.6 64 50.0
BcaNung00981 Brassica carinata HOM05D005411 ORTHO05D006463 3.8e-07 59.3 131 35.1
AUR62012163 Chenopodium quinoa HOM05D005411 ORTHO05D006463 3.8e-07 59.3 160 30.6


User provided reference genes

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