Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0194 Marchantia polymorpha HOM05D005347 ORTHO05D007838 0.0e+00 2778.8 1410 100.0
Pp3c10_13960 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2364.7 1413 83.8
Pp3c10_13970 Physcomitrium patens HOM05D005347 ORTHO05D007838 0.0e+00 2364.7 1413 83.8
AagrBONN_evm.TU.Sc2ySwM_368.2268 Anthoceros agrestis HOM05D005347 ORTHO05D007838 0.0e+00 2300.8 1331 84.1
CBR_g40549 Chara braunii HOM05D005347 ORTHO05D007838 0.0e+00 2297.7 1403 81.3
SMO347G0130 Selaginella moellendorffii HOM05D005347 ORTHO05D007838 0.0e+00 2258.4 1333 82.8
Glyma.10G097800 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2213.7 1359 79.8
SEGI_14472 Sequoiadendron giganteum HOM05D005347 ORTHO05D007838 0.0e+00 2212.2 1418 77.2
Phvul.007G252700 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2206.0 1334 80.6
Manes.08G050600 Manihot esculenta HOM05D005347 ORTHO05D007838 0.0e+00 2205.6 1334 80.4
VMungo1383G0107 Vigna mungo HOM05D005347 ORTHO05D007838 0.0e+00 2205.3 1340 80.2
MSTRG.10814 Avicennia marina HOM05D005347 ORTHO05D007838 0.0e+00 2204.1 1334 80.7
Lj1g0017211 Lotus japonicus HOM05D005347 ORTHO05D007838 0.0e+00 2204.1 1340 80.5
Gorai.006G136500 Gossypium raimondii HOM05D005347 ORTHO05D007838 0.0e+00 2203.3 1340 79.8
Duzib093G0142 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2201.4 1340 79.9
Ciclev10004154m.g Citrus clementina HOM05D005347 ORTHO05D007838 0.0e+00 2198.7 1334 80.1
ClCG04G000090 Citrullus lanatus HOM05D005347 ORTHO05D007838 0.0e+00 2198.3 1347 79.5
Gohir.A09G122100 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2198.3 1340 79.6
Nn7g36281 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2197.9 1373 78.6
Cfa016819 Carpinus fangiana HOM05D005347 ORTHO05D007838 0.0e+00 2197.5 1340 79.3
arahy.Tifrunner.gnm1.ann1.RSU8B2 Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2196.4 1343 79.9
Ca_26018_v3 Cicer arietinum L. HOM05D005347 ORTHO05D007838 0.0e+00 2196.4 1340 79.8
arahy.Tifrunner.gnm1.ann1.XR90DA Arachis hypogaea HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1343 79.9
Dinv12481 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1340 80.1
Duzib128G0418 Durio zibethinus HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1340 79.4
Psat6g120040 Pisum sativum HOM05D005347 ORTHO05D007838 0.0e+00 2196.0 1340 80.1
Sed0003738 Sechium edule HOM05D005347 ORTHO05D007838 0.0e+00 2194.1 1347 79.4
MELO3C023131.2 Cucumis melo HOM05D005347 ORTHO05D007838 0.0e+00 2193.3 1347 79.4
Aqoxy2G00152 Aquilegia oxysepala HOM05D005347 ORTHO05D007838 0.0e+00 2192.9 1334 80.3
RcHm_v2.0_Chr3g0482331 Rosa chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2192.5 1342 80.1
Lalb_Chr25g0287111 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2191.8 1334 79.8
Dinv39601 Davidia involucrata HOM05D005347 ORTHO05D007838 0.0e+00 2191.0 1334 80.1
Glyma.19G139300 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2191.0 1340 79.9
Glyma.03G137000 Glycine max HOM05D005347 ORTHO05D007838 0.0e+00 2189.8 1340 79.5
MD12G1073700 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2189.1 1344 79.6
Prupe.7G061100 Prunus persica HOM05D005347 ORTHO05D007838 0.0e+00 2188.7 1351 79.5
TWI53G0247 Tripterygium wilfordii HOM05D005347 ORTHO05D007838 0.0e+00 2188.7 1368 78.7
MD14G1072000 Malus domestica HOM05D005347 ORTHO05D007838 0.0e+00 2188.3 1351 79.1
Eucgr.A02348 Eucalyptus grandis HOM05D005347 ORTHO05D007838 0.0e+00 2187.1 1345 79.1
COL.COLO4_28282 Corchorus olitorius HOM05D005347 ORTHO05D007838 0.0e+00 2186.4 1335 79.7
CsaV3_4G011730 Cucumis sativus L. HOM05D005347 ORTHO05D007838 0.0e+00 2186.4 1349 78.8
PSO384G4351 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2186.0 1336 80.0
Potri.006G051100 Populus trichocarpa HOM05D005347 ORTHO05D007838 0.0e+00 2186.0 1340 79.6
Atru.chr1.1096 Acer truncatum HOM05D005347 ORTHO05D007838 0.0e+00 2185.6 1334 79.6
FAN05G5756 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2185.6 1343 79.6
CSS0016317 Camellia sinensis var. sinensis HOM05D005347 ORTHO05D007838 0.0e+00 2184.8 1342 79.0
FAN02G3940 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2184.8 1344 79.5
PSO339G0901 Papaver somniferum HOM05D005347 ORTHO05D007838 0.0e+00 2184.8 1336 80.0
Actinidia38547 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2184.5 1339 79.5
MBI17_g13973_MAGBIO Magnolia biondii HOM05D005347 ORTHO05D007838 0.0e+00 2184.5 1351 79.3
PGR004G1765 Punica granatum HOM05D005347 ORTHO05D007838 0.0e+00 2184.5 1334 79.0
FvH4_6g23800 Fragaria vesca HOM05D005347 ORTHO05D007838 0.0e+00 2182.5 1343 79.4
FAN14G0383 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2182.5 1343 79.4
Lalb_Chr20g0110491 Lupinus albus HOM05D005347 ORTHO05D007838 0.0e+00 2181.8 1340 79.2
Oeu008920.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 2181.8 1335 79.3
Phvul.001G132200 Phaseolus vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2181.0 1335 79.4
Hma1.2p1_2002F.1_g310740 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 2179.8 1339 79.2
Cc06_g17100 Coffea canephora HOM05D005347 ORTHO05D007838 0.0e+00 2179.4 1387 77.4
EL10Ac3g07089 Beta vulgaris HOM05D005347 ORTHO05D007838 0.0e+00 2179.1 1331 79.7
TAR465G0003 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 2179.1 1339 79.3
Nn2g15252 Nelumbo nucifera HOM05D005347 ORTHO05D007838 0.0e+00 2178.3 1339 79.0
C03p07120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2177.5 1349 78.7
BcaB01g05345 Brassica carinata HOM05D005347 ORTHO05D007838 0.0e+00 2177.1 1349 78.7
SGA_v2.0_scaffold105G30411 Striga asiatica HOM05D005347 ORTHO05D007838 0.0e+00 2176.4 1334 78.9
Actinidia17237 Actinidia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 2176.0 1339 79.0
BolC3t13211H Brassica oleracea HOM05D005347 ORTHO05D007838 0.0e+00 2176.0 1349 78.7
Lsat_1_v5_gn_9_29020 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2176.0 1357 78.6
HanXRQChr10g0288781 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2175.2 1334 79.8
AUR62024447 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2174.1 1331 79.4
HanXRQChr10g0296641 Helianthus annuus HOM05D005347 ORTHO05D007838 0.0e+00 2174.1 1334 79.7
Rhsim04G0102500 Rhododendron simsii HOM05D005347 ORTHO05D007838 0.0e+00 2173.3 1334 79.5
A03p06120 Brassica napus HOM05D005347 ORTHO05D007838 0.0e+00 2172.5 1350 78.3
BraA03t09944Z Brassica rapa HOM05D005347 ORTHO05D007838 0.0e+00 2172.5 1350 78.3
Carub.0006s1179 Capsella rubella HOM05D005347 ORTHO05D007838 0.0e+00 2172.5 1343 79.0
CAN.G676.69 Capsicum annuum HOM05D005347 ORTHO05D007838 0.0e+00 2172.5 1336 79.3
SalBow6G2907 Salvia bowleyana HOM05D005347 ORTHO05D007838 0.0e+00 2172.5 1353 78.9
DCAR_013602 Daucus carota HOM05D005347 ORTHO05D007838 0.0e+00 2171.7 1357 78.4
ECA247G2461 Erigeron canadensis HOM05D005347 ORTHO05D007838 0.0e+00 2171.4 1331 80.0
CARHR199810 Cardamine hirsuta HOM05D005347 ORTHO05D007838 0.0e+00 2169.8 1343 78.6
AUR62026037 Chenopodium quinoa HOM05D005347 ORTHO05D007838 0.0e+00 2169.8 1331 79.3
FAN09G2062 Fragaria x ananassa HOM05D005347 ORTHO05D007838 0.0e+00 2169.4 1370 78.0
QL07p000318 Quercus lobata HOM05D005347 ORTHO05D007838 0.0e+00 2169.4 1348 78.6
AL6G24240 Arabidopsis lyrata HOM05D005347 ORTHO05D007838 0.0e+00 2166.3 1349 78.2
AT5G13630 Arabidopsis thaliana HOM05D005347 ORTHO05D007838 0.0e+00 2164.8 1343 78.8
Gohir.D09G118200 Gossypium hirsutum HOM05D005347 ORTHO05D007838 0.0e+00 2163.3 1340 78.8
PGSC0003DMG400027276 Solanum tuberosum HOM05D005347 ORTHO05D007838 0.0e+00 2161.7 1334 78.9
Zm00001eb433610 Zea mays HOM05D005347 ORTHO05D007838 0.0e+00 2161.7 1343 79.2
Sp6g30390 Schrenkiella parvula HOM05D005347 ORTHO05D007838 0.0e+00 2160.6 1343 78.4
Sopen04g007830 Solanum pennellii HOM05D005347 ORTHO05D007838 0.0e+00 2160.6 1334 78.8
Migut.J01759 Erythranthe guttata HOM05D005347 ORTHO05D007838 0.0e+00 2160.2 1337 78.5
Solyc04g015750.3 Solanum lycopersicum HOM05D005347 ORTHO05D007838 0.0e+00 2159.4 1334 78.7
Thhalv10012443m.g Eutrema salsugineum HOM05D005347 ORTHO05D007838 0.0e+00 2159.0 1342 78.5
Aa31sc144G60 Aethionema arabicum HOM05D005347 ORTHO05D007838 0.0e+00 2150.2 1331 78.6
ATR0626G393 Amborella trichopoda HOM05D005347 ORTHO05D007838 0.0e+00 2149.8 1378 76.2
HPP92_012089 Vanilla planifolia HOM05D005347 ORTHO05D007838 0.0e+00 2148.6 1350 78.4
Sabra06G0035800 Salix brachista HOM05D005347 ORTHO05D007838 0.0e+00 2148.2 1340 78.7
Lsat_1_v5_gn_9_29121 Lactuca sativa HOM05D005347 ORTHO05D007838 0.0e+00 2147.9 1417 75.2
Cpa.g.sc92.51 Carica papaya HOM05D005347 ORTHO05D007838 0.0e+00 2127.1 1340 77.8
Peaxi162Scf00130g00022 Petunia axillaris HOM05D005347 ORTHO05D007838 0.0e+00 2120.5 1336 78.0
CDE05G2234 Ceratophyllum demersum HOM05D005347 ORTHO05D007838 0.0e+00 2119.7 1334 78.0
Haze_19858 Corylus avellana HOM05D005347 ORTHO05D007838 0.0e+00 2104.7 1340 76.8
Ah.13g076460 Amaranthus hybridus HOM05D005347 ORTHO05D007838 0.0e+00 2100.9 1343 77.3
vmacro09075 Vaccinium macrocarpon HOM05D005347 ORTHO05D007838 0.0e+00 2034.2 1339 75.1
unitig_578.g15983 Utricularia gibba HOM05D005347 ORTHO05D007838 0.0e+00 2028.4 1359 74.5
MCO07G263 Micromonas commoda HOM05D005347 ORTHO05D007838 0.0e+00 1974.5 1334 73.2
CiPaw.10G033300 Carya illinoinensis HOM05D005347 ORTHO05D007838 0.0e+00 1967.6 1220 78.4
Thecc.05G153600 Theobroma cacao HOM05D005347 ORTHO05D007838 0.0e+00 1965.3 1218 78.8
Sc04g0002790 Simmondsia chinensis HOM05D005347 ORTHO05D007838 0.0e+00 1953.7 1222 78.0
TPR.G10615 Trifolium pratense HOM05D005347 ORTHO05D007838 0.0e+00 1943.7 1302 74.6
Cre07.g325500 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D007838 0.0e+00 1927.1 1335 71.4
Oeu017946.1 Olea europaea HOM05D005347 ORTHO05D007838 0.0e+00 1764.2 1333 68.1
Nitab4.5_0005195g0040 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1706.8 1071 77.5
Nitab4.5_0010636g0020 Nicotiana tabacum HOM05D005347 ORTHO05D007838 0.0e+00 1688.3 1059 77.4
GSVIVG01033277001 Vitis vinifera HOM05D005347 ORTHO05D007838 0.0e+00 1666.4 1357 65.6
Hund05283 Selenicereus undatus HOM05D005347 ORTHO05D007838 0.0e+00 1546.9 913 82.8
Hma1.2p1_2002F.1_g310730 Hydrangea macrophylla HOM05D005347 ORTHO05D007838 0.0e+00 1546.2 964 79.0
Lju124A41T48 Lonicera japonica HOM05D005347 ORTHO05D007838 0.0e+00 1499.6 898 82.4
TAR369G0825 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1360.5 808 81.3
TAR623G1548 Trochodendron aralioides HOM05D005347 ORTHO05D007838 0.0e+00 1359.0 809 81.3
Os07g0656500 Oryza sativa ssp. japonica HOM05D005347 ORTHO05D007838 0.0e+00 1075.1 690 78.0
PRCOL_00001535 Prasinoderma coloniale HOM05D005347 ORTHO05D007838 5.4e-289 998.4 1200 47.7
MD03G1176300 Malus domestica HOM05D005347 ORTHO05D021808 3.9e-287 992.3 676 72.0
Zm00001eb066400 Zea mays HOM05D005347 ORTHO05D007838 2.0e-275 953.4 570 80.9
MD09G1118200 Malus domestica HOM05D005347 ORTHO05D007838 2.8e-269 932.9 670 70.1
TPR.G25646 Trifolium pratense HOM05D005347 ORTHO05D007838 2.1e-232 810.4 587 70.2
TAR369G0767 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.1e-188 663.3 427 75.4
MCO07G355 Micromonas commoda HOM05D005347 ORTHO05D034305 1.5e-185 654.8 1434 32.6
Lju124C41T11 Lonicera japonica HOM05D005347 ORTHO05D021808 5.6e-185 652.9 457 71.6
TAR623G0733 Trochodendron aralioides HOM05D005347 ORTHO05D021808 4.7e-184 649.8 427 73.8
CDE07G0141 Ceratophyllum demersum HOM05D005347 ORTHO05D021808 3.4e-182 643.7 399 76.7
BcaB01g05344 Brassica carinata HOM05D005347 ORTHO05D021808 1.3e-181 641.7 429 72.5
Cre11.g477625 Chlamydomonas reinhardtii HOM05D005347 ORTHO05D034305 1.8e-162 578.2 1465 30.2
CBR_g6691 Chara braunii HOM05D005347 ORTHO05D034305 4.2e-116 424.1 1281 28.3
TPR.G7382 Trifolium pratense HOM05D005347 ORTHO05D030226 6.6e-85 320.5 175 88.0
TPR.G20810 Trifolium pratense HOM05D005347 ORTHO05D030226 1.3e-56 226.5 123 86.2
Zm00001eb066410 Zea mays HOM05D005347 ORTHO05D007838 5.4e-55 221.1 148 68.9
FAN15G2164 Fragaria x ananassa HOM05D005347 ORTHO05D007838 1.6e-43 183.0 107 86.0
Nn2g10425 Nelumbo nucifera HOM05D005347 ORTHO05D277195 7.9e-30 137.5 139 49.6
Pp3c5_16660 Physcomitrium patens HOM05D005347 ORTHO05D030226 6.7e-29 134.4 91 76.9
Psat4g101600 Pisum sativum HOM05D000140 ORTHO05D014072 1.9e-28 132.9 176 43.8
Nn7g36276 Nelumbo nucifera HOM05D005347 ORTHO05D030226 3.7e-27 128.6 99 66.7
Lsat_1_v5_gn_5_109040 Lactuca sativa HOM05D005347 ORTHO05D231332 2.6e-17 95.9 60 78.3


User provided reference genes

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