Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0129 Marchantia polymorpha HOM05D004415 ORTHO05D005198 1.1e-184 649.8 323 100.0
AagrBONN_evm.TU.Sc2ySwM_362.579 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.1e-99 367.5 295 59.0
AagrBONN_evm.TU.Sc2ySwM_368.3355 Anthoceros agrestis HOM05D004415 ORTHO05D005198 3.5e-98 362.5 295 58.3
Pp3c19_23300 Physcomitrium patens HOM05D004415 ORTHO05D005198 1.3e-97 360.5 298 59.1
AagrBONN_evm.TU.Sc2ySwM_368.1346 Anthoceros agrestis HOM05D004415 ORTHO05D005198 1.1e-96 357.5 293 57.7
Nn7g37839 Nelumbo nucifera HOM05D004415 ORTHO05D005198 1.5e-96 357.1 294 59.9
GSVIVG01037942001 Vitis vinifera HOM05D004415 ORTHO05D005198 3.6e-95 352.4 294 60.5
MSTRG.7566 Avicennia marina HOM05D004415 ORTHO05D005198 6.1e-95 351.7 291 58.4
TAR627G0414 Trochodendron aralioides HOM05D004415 ORTHO05D005198 8.0e-95 351.3 295 58.3
TAR627G1150 Trochodendron aralioides HOM05D004415 ORTHO05D005198 8.0e-95 351.3 295 58.3
ATR1098G142 Amborella trichopoda HOM05D004415 ORTHO05D005198 1.4e-94 350.5 294 57.5
arahy.Tifrunner.gnm1.ann1.ZSFV9B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.4e-94 350.5 294 58.5
CDE06G2804 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.3e-94 349.7 294 58.5
Ca_02386_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 4.0e-94 349.0 294 60.2
COL.COLO4_22898 Corchorus olitorius HOM05D004415 ORTHO05D005198 4.0e-94 349.0 290 59.3
Rhsim13G0126400 Rhododendron simsii HOM05D004415 ORTHO05D005198 5.2e-94 348.6 290 59.0
Cfa000755 Carpinus fangiana HOM05D004415 ORTHO05D005198 6.8e-94 348.2 294 58.5
Migut.M01938 Erythranthe guttata HOM05D004415 ORTHO05D005198 6.8e-94 348.2 294 57.8
Sc17g0004090 Simmondsia chinensis HOM05D004415 ORTHO05D005198 6.8e-94 348.2 294 57.5
Ciclev10016110m.g Citrus clementina HOM05D004415 ORTHO05D005198 8.8e-94 347.8 294 59.2
VMungo1309G0873 Vigna mungo HOM05D004415 ORTHO05D005198 8.8e-94 347.8 293 59.4
vmacro03476 Vaccinium macrocarpon HOM05D004415 ORTHO05D005198 1.2e-93 347.4 290 58.6
CDE03G0179 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 2.0e-93 346.7 294 57.8
arahy.Tifrunner.gnm1.ann1.UW0JAL Arachis hypogaea HOM05D004415 ORTHO05D005198 2.6e-93 346.3 294 58.5
Os04g0618500 Oryza sativa ssp. japonica HOM05D004415 ORTHO05D005198 2.6e-93 346.3 294 57.5
Aqoxy4G00050 Aquilegia oxysepala HOM05D004415 ORTHO05D005198 3.4e-93 345.9 293 58.7
MD00G1097300 Malus domestica HOM05D004415 ORTHO05D005198 4.4e-93 345.5 294 57.5
Phvul.009G218500 Phaseolus vulgaris HOM05D004415 ORTHO05D005198 4.4e-93 345.5 295 58.0
Thecc.06G005600 Theobroma cacao HOM05D004415 ORTHO05D005198 4.4e-93 345.5 293 58.4
Actinidia29247 Actinidia chinensis HOM05D004415 ORTHO05D005198 9.8e-93 344.4 293 59.0
FvH4_3g11520 Fragaria vesca HOM05D004415 ORTHO05D005198 1.7e-92 343.6 294 58.2
Potri.001G440600 Populus trichocarpa HOM05D004415 ORTHO05D005198 1.7e-92 343.6 296 57.4
CsaV3_1G037760 Cucumis sativus L. HOM05D004415 ORTHO05D005198 2.2e-92 343.2 294 58.5
Hma1.2p1_0008F-2.1_g005810 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 2.2e-92 343.2 295 58.0
Atru.chr10.660 Acer truncatum HOM05D004415 ORTHO05D005198 6.3e-92 341.7 291 57.4
CiPaw.09G149000 Carya illinoinensis HOM05D004415 ORTHO05D005198 6.3e-92 341.7 293 58.0
CSS0002194 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 1.1e-91 340.9 294 58.2
Manes.16G062800 Manihot esculenta HOM05D004415 ORTHO05D005198 1.1e-91 340.9 293 58.0
RcHm_v2.0_Chr5g0018471 Rosa chinensis HOM05D004415 ORTHO05D005198 1.1e-91 340.9 294 57.5
PGR083G0443 Punica granatum HOM05D004415 ORTHO05D005198 1.4e-91 340.5 295 56.9
Hund01093 Selenicereus undatus HOM05D004415 ORTHO05D005198 1.8e-91 340.1 294 57.5
MSTRG.16315 Avicennia marina HOM05D004415 ORTHO05D005198 2.4e-91 339.7 294 57.1
CANSAT35G0835 Cannabis sativa HOM05D004415 ORTHO05D005198 2.4e-91 339.7 295 56.6
CBR_g24190 Chara braunii HOM05D004415 ORTHO05D005198 2.4e-91 339.7 298 56.4
Dinv03287 Davidia involucrata HOM05D004415 ORTHO05D005198 3.1e-91 339.3 298 57.7
Medtr2g047110 Medicago truncatula HOM05D004415 ORTHO05D005198 3.1e-91 339.3 294 57.8
TWI38G1449 Tripterygium wilfordii HOM05D004415 ORTHO05D005198 3.1e-91 339.3 294 57.5
CSS0010489 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 7.0e-91 338.2 283 58.7
ClCG01G008890 Citrullus lanatus HOM05D004415 ORTHO05D005198 7.0e-91 338.2 294 57.5
Duzib235G0717 Durio zibethinus HOM05D004415 ORTHO05D005198 1.6e-90 337.0 294 56.8
Gohir.A06G202400 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.6e-90 337.0 294 56.8
Gorai.010G247000 Gossypium raimondii HOM05D004415 ORTHO05D005198 2.7e-90 336.3 294 56.8
CSS0048897 Camellia sinensis var. sinensis HOM05D004415 ORTHO05D005198 4.5e-90 335.5 294 56.8
Sabra16G0298000 Salix brachista HOM05D004415 ORTHO05D005198 4.5e-90 335.5 304 55.9
Sabra16G0300000 Salix brachista HOM05D004415 ORTHO05D005198 4.5e-90 335.5 304 55.6
Ah.01g002800 Amaranthus hybridus HOM05D004415 ORTHO05D005198 7.7e-90 334.7 292 55.8
SalBow8G0313 Salvia bowleyana HOM05D004415 ORTHO05D005198 7.7e-90 334.7 293 55.6
SalBow8G4844 Salvia bowleyana HOM05D004415 ORTHO05D005198 7.7e-90 334.7 293 55.6
SMO228G0081 Selaginella moellendorffii HOM05D004415 ORTHO05D005198 1.0e-89 334.3 268 58.6
HPP92_013188 Vanilla planifolia HOM05D004415 ORTHO05D005198 1.3e-89 334.0 293 56.3
Cpa.g.sc173.46 Carica papaya HOM05D004415 ORTHO05D005198 2.3e-89 333.2 293 57.0
FAN16G2189 Fragaria x ananassa HOM05D004415 ORTHO05D005198 2.9e-89 332.8 312 54.8
Lj1A1155G52 Lonicera japonica HOM05D004415 ORTHO05D005198 2.9e-89 332.8 293 56.0
Sed0021762 Sechium edule HOM05D004415 ORTHO05D005198 2.9e-89 332.8 295 56.9
FAN25G0769 Fragaria x ananassa HOM05D004415 ORTHO05D005198 3.8e-89 332.4 311 53.7
Potri.011G155200 Populus trichocarpa HOM05D004415 ORTHO05D005198 3.8e-89 332.4 294 55.8
Lalb_Chr11g0073471 Lupinus albus HOM05D004415 ORTHO05D005198 5.0e-89 332.0 294 55.8
Sp7g18770 Schrenkiella parvula HOM05D004415 ORTHO05D005198 5.0e-89 332.0 290 55.9
FAN21G2450 Fragaria x ananassa HOM05D004415 ORTHO05D005198 6.5e-89 331.6 312 54.2
Glyma.09G083100 Glycine max HOM05D004415 ORTHO05D005198 8.6e-89 331.3 291 56.4
Thhalv10025893m.g Eutrema salsugineum HOM05D004415 ORTHO05D005198 1.1e-88 330.9 290 55.5
Eucgr.D01029 Eucalyptus grandis HOM05D004415 ORTHO05D005198 1.5e-88 330.5 259 60.2
EL10Ac9g22486 Beta vulgaris HOM05D004415 ORTHO05D005198 1.9e-88 330.1 288 56.2
Carub.0007s2075 Capsella rubella HOM05D004415 ORTHO05D005198 1.9e-88 330.1 290 54.8
AUR62025006 Chenopodium quinoa HOM05D004415 ORTHO05D005198 1.9e-88 330.1 294 56.1
unitig_37.g12064 Utricularia gibba HOM05D004415 ORTHO05D005198 1.9e-88 330.1 294 54.4
AT4G20410 Arabidopsis thaliana HOM05D004415 ORTHO05D005198 3.2e-88 329.3 290 54.5
Solyc02g069640.3 Solanum lycopersicum HOM05D004415 ORTHO05D005198 3.2e-88 329.3 294 55.4
THA.LOC104812930 Tarenaya hassleriana HOM05D004415 ORTHO05D005198 3.2e-88 329.3 292 54.5
AL7G33480 Arabidopsis lyrata HOM05D004415 ORTHO05D005198 4.2e-88 328.9 290 54.8
ECA236G1935 Erigeron canadensis HOM05D004415 ORTHO05D005198 4.2e-88 328.9 293 56.3
PSO675G6508 Papaver somniferum HOM05D004415 ORTHO05D005198 4.2e-88 328.9 295 56.9
QL05p063115 Quercus lobata HOM05D004415 ORTHO05D005198 4.2e-88 328.9 338 51.5
Sopen02g018770 Solanum pennellii HOM05D004415 ORTHO05D005198 4.2e-88 328.9 294 55.1
AUR62006530 Chenopodium quinoa HOM05D004415 ORTHO05D005198 7.2e-88 328.2 294 55.8
Glyma.15G191200 Glycine max HOM05D004415 ORTHO05D005198 7.2e-88 328.2 294 55.1
Lalb_Chr08g0233111 Lupinus albus HOM05D004415 ORTHO05D005198 9.5e-88 327.8 294 54.1
CARHR227240 Cardamine hirsuta HOM05D004415 ORTHO05D005198 1.2e-87 327.4 290 54.5
Psat1g018760 Pisum sativum HOM05D004415 ORTHO05D005198 1.2e-87 327.4 294 56.1
SGA_v2.0_scaffold298G47634 Striga asiatica HOM05D004415 ORTHO05D005198 1.2e-87 327.4 294 53.7
Prupe.4G102500 Prunus persica HOM05D004415 ORTHO05D005198 1.6e-87 327.0 293 56.0
PSO541G2694 Papaver somniferum HOM05D004415 ORTHO05D005198 2.1e-87 326.6 295 56.3
A01p12100 Brassica napus HOM05D004415 ORTHO05D005198 3.6e-87 325.9 290 54.8
C01p14410 Brassica napus HOM05D004415 ORTHO05D005198 3.6e-87 325.9 290 54.8
BolC1t01398H Brassica oleracea HOM05D004415 ORTHO05D005198 3.6e-87 325.9 290 54.8
Medtr8g089250 Medicago truncatula HOM05D004415 ORTHO05D005198 6.1e-87 325.1 294 54.4
PGSC0003DMG400021134 Solanum tuberosum HOM05D004415 ORTHO05D005198 8.0e-87 324.7 294 54.4
Oeu063146.1 Olea europaea HOM05D004415 ORTHO05D005198 1.0e-86 324.3 293 55.3
TPR.G6264 Trifolium pratense HOM05D004415 ORTHO05D005198 1.0e-86 324.3 296 54.1
Ca_17811_v3 Cicer arietinum L. HOM05D004415 ORTHO05D005198 1.4e-86 323.9 296 53.7
BraA01t01153Z Brassica rapa HOM05D004415 ORTHO05D005198 5.2e-86 322.0 290 54.5
TPR.G22904 Trifolium pratense HOM05D004415 ORTHO05D005198 5.2e-86 322.0 285 55.4
Peaxi162Scf00195g00616 Petunia axillaris HOM05D004415 ORTHO05D005198 6.8e-86 321.6 294 54.8
Lalb_Chr07g0185681 Lupinus albus HOM05D004415 ORTHO05D005198 4.4e-85 318.9 283 55.5
Sabra11G0144600 Salix brachista HOM05D004415 ORTHO05D005198 3.7e-84 315.8 272 56.2
arahy.Tifrunner.gnm1.ann1.Z0R64B Arachis hypogaea HOM05D004415 ORTHO05D005198 1.1e-83 314.3 294 52.0
Gorai.009G116300 Gossypium raimondii HOM05D004415 ORTHO05D005198 5.4e-83 312.0 293 52.9
Nitab4.5_0010415g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 2.7e-82 309.7 294 53.1
arahy.Tifrunner.gnm1.ann1.5MZ6ZS Arachis hypogaea HOM05D004415 ORTHO05D005198 3.5e-82 309.3 294 51.7
Gohir.D06G219300 Gossypium hirsutum HOM05D004415 ORTHO05D005198 3.5e-82 309.3 246 59.8
Nitab4.5_0007613g0030 Nicotiana tabacum HOM05D004415 ORTHO05D005198 3.5e-82 309.3 294 53.1
Sed0009944 Sechium edule HOM05D004415 ORTHO05D005198 2.3e-81 306.6 277 56.0
CAN.G954.7 Capsicum annuum HOM05D004415 ORTHO05D005198 3.8e-81 305.8 290 52.1
Lsat_1_v5_gn_7_31101 Lactuca sativa HOM05D004415 ORTHO05D005198 1.8e-78 297.0 293 52.6
Aa31LG6G2800 Aethionema arabicum HOM05D004415 ORTHO05D005198 3.0e-78 296.2 290 50.3
Hma1.2p1_0008F-2.1_g005800 Hydrangea macrophylla HOM05D004415 ORTHO05D005198 1.7e-73 280.4 215 62.3
Zm00001eb431060 Zea mays HOM05D004415 ORTHO05D005198 3.9e-73 279.3 214 61.7
Gohir.D05G112100 Gossypium hirsutum HOM05D004415 ORTHO05D005198 5.0e-73 278.9 318 46.5
CBR_g48904 Chara braunii HOM05D004415 ORTHO05D005198 8.6e-73 278.1 255 55.3
Haze_05963 Corylus avellana HOM05D004415 ORTHO05D005198 5.8e-69 265.4 294 49.3
Cc09_g04060 Coffea canephora HOM05D004415 ORTHO05D005198 1.7e-68 263.8 222 55.9
MELO3C021810.2 Cucumis melo HOM05D004415 ORTHO05D005198 8.3e-68 261.5 224 57.6
HanXRQChr04g0119541 Helianthus annuus HOM05D004415 ORTHO05D005198 3.2e-67 259.6 223 58.3
Lj6g0004921 Lotus japonicus HOM05D004415 ORTHO05D005198 6.2e-63 245.4 293 43.3
arahy.Tifrunner.gnm1.ann1.QWIY8B Arachis hypogaea HOM05D004415 ORTHO05D005198 5.2e-62 242.3 274 46.0
Zm00001eb410240 Zea mays HOM05D004415 ORTHO05D005198 2.0e-61 240.4 215 54.0
CDE03G0221 Ceratophyllum demersum HOM05D004415 ORTHO05D005198 9.9e-61 238.0 303 44.2
SEGI_29507 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.7e-57 227.3 164 66.5
arahy.Tifrunner.gnm1.ann1.09GK0V Arachis hypogaea HOM05D004415 ORTHO05D005198 7.8e-50 201.8 232 44.8
MBI02_g43828_MAGBIO Magnolia biondii HOM05D004415 ORTHO05D005198 3.9e-49 199.5 150 62.0
Duzib043G0003 Durio zibethinus HOM05D004415 ORTHO05D005198 1.5e-48 197.6 177 55.4
arahy.Tifrunner.gnm1.ann1.6K3MVX Arachis hypogaea HOM05D004415 ORTHO05D005198 4.2e-43 179.5 178 49.4
Gohir.A05G111501 Gossypium hirsutum HOM05D004415 ORTHO05D005198 1.2e-42 177.9 216 45.4
Zm00001eb072080 Zea mays HOM05D004415 ORTHO05D005198 7.3e-40 168.7 144 54.2
MCO11G422 Micromonas commoda HOM05D004415 ORTHO05D005198 1.4e-38 164.5 285 34.0
PRCOL_00005341 Prasinoderma coloniale HOM05D004415 ORTHO05D005198 1.8e-38 164.1 303 33.7
arahy.Tifrunner.gnm1.ann1.W2C20P Arachis hypogaea HOM05D004415 ORTHO05D005198 7.1e-35 152.1 150 50.0
TAR627G0753 Trochodendron aralioides HOM05D004415 ORTHO05D005198 6.0e-34 149.1 135 54.8
Cre08.g385700 Chlamydomonas reinhardtii HOM05D004415 ORTHO05D005198 3.7e-31 139.8 286 30.1
arahy.Tifrunner.gnm1.ann1.NJ63RV Arachis hypogaea HOM05D004415 ORTHO05D005198 4.0e-30 136.3 130 50.8
SEGI_22365 Sequoiadendron giganteum HOM05D004415 ORTHO05D005198 1.1e-24 118.2 106 53.8
VMungo0464G1344 Vigna mungo HOM05D004415 ORTHO05D005198 2.8e-23 113.6 106 54.7
Zm00001eb266710 Zea mays HOM05D004415 ORTHO05D005198 2.4e-22 110.5 104 51.0
Oeu063144.1 Olea europaea HOM05D004415 ORTHO05D005198 4.5e-21 106.3 182 37.4
arahy.Tifrunner.gnm1.ann1.YAAB6X Arachis hypogaea HOM05D004415 ORTHO05D005198 2.2e-20 104.0 104 46.2
arahy.Tifrunner.gnm1.ann1.479FYN Arachis hypogaea HOM05D004415 ORTHO05D005198 9.0e-14 82.0 113 38.1
Cc09_g04070 Coffea canephora HOM05D004415 ORTHO05D005198 2.2e-12 77.4 63 60.3
SGA_v2.0_scaffold298G47629 Striga asiatica HOM05D004415 ORTHO05D005198 3.2e-11 73.6 126 33.3
arahy.Tifrunner.gnm1.ann1.LII2ER Arachis hypogaea HOM05D004415 ORTHO05D005198 7.9e-10 68.9 98 39.8
arahy.Tifrunner.gnm1.ann1.8SCZ96 Arachis hypogaea HOM05D004415 ORTHO05D005198 8.8e-09 65.5 98 38.8
FvH4_3g11480 Fragaria vesca HOM05D004415 ORTHO05D005198 1.7e-07 61.2 82 41.5
VMungo0331G0484 Vigna mungo HOM05D003730 ORTHO05D005198 8.2e-07 58.9 37 67.6
BcaB03g15995 Brassica carinata HOM05D004415 ORTHO05D005198 1.8e-06 57.8 91 36.3


User provided reference genes

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