Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0091 Marchantia polymorpha HOM05D001329 ORTHO05D004946 0.0e+00 1270.0 653 100.0
Pp3c1_36770 Physcomitrium patens HOM05D001329 ORTHO05D004946 1.5e-193 680.2 516 70.7
Aqoxy7G03959 Aquilegia oxysepala HOM05D001329 ORTHO05D004946 2.5e-151 540.0 511 56.4
ATR0705G162 Amborella trichopoda HOM05D001329 ORTHO05D004946 1.3e-149 534.3 509 54.6
BolC3t15673H Brassica oleracea HOM05D001329 ORTHO05D004946 1.3e-149 534.3 506 55.5
C03p33520 Brassica napus HOM05D001329 ORTHO05D004946 1.8e-149 533.9 506 55.5
BcaC01g04813 Brassica carinata HOM05D001329 ORTHO05D004946 5.1e-149 532.3 506 55.1
A03p27790 Brassica napus HOM05D001329 ORTHO05D004946 1.5e-148 530.8 540 53.1
Aa31LG3G5830 Aethionema arabicum HOM05D001329 ORTHO05D004946 1.9e-148 530.4 519 54.7
BraA03t11990Z Brassica rapa HOM05D001329 ORTHO05D004946 2.5e-148 530.0 540 53.0
Sp6g12440 Schrenkiella parvula HOM05D001329 ORTHO05D004946 3.3e-148 529.6 506 54.3
CBR_g52747 Chara braunii HOM05D001329 ORTHO05D004946 4.8e-147 525.8 596 51.3
MBI02_g35318_MAGBIO Magnolia biondii HOM05D001329 ORTHO05D004946 6.2e-147 525.4 507 55.4
Nn8g39015 Nelumbo nucifera HOM05D001329 ORTHO05D004946 1.2e-145 521.2 574 51.9
MD17G1180500 Malus domestica HOM05D001329 ORTHO05D004946 2.6e-145 520.0 504 56.3
TAR626G1508 Trochodendron aralioides HOM05D001329 ORTHO05D004946 7.6e-145 518.5 517 54.7
SMO146G0024 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.0e-144 518.1 504 55.6
TAR626G1659 Trochodendron aralioides HOM05D001329 ORTHO05D004946 1.3e-144 517.7 517 54.7
AL8G24420 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 1.7e-144 517.3 523 53.0
Carub.0008s1040 Capsella rubella HOM05D001329 ORTHO05D004946 1.7e-144 517.3 524 52.1
GSVIVG01016954001 Vitis vinifera HOM05D001329 ORTHO05D004946 1.7e-144 517.3 515 54.8
CANSAT56G2668 Cannabis sativa HOM05D001329 ORTHO05D004946 8.4e-144 515.0 534 52.8
THA.LOC104803142 Tarenaya hassleriana HOM05D001329 ORTHO05D004946 8.4e-144 515.0 536 52.8
Cc04_g02430 Coffea canephora HOM05D001329 ORTHO05D004946 1.1e-143 514.6 506 54.7
AT5G50340 Arabidopsis thaliana HOM05D001329 ORTHO05D004946 1.4e-143 514.2 503 53.7
Peaxi162Scf00038g01146 Petunia axillaris HOM05D001329 ORTHO05D004946 2.5e-143 513.5 545 52.8
HanXRQChr05g0139791 Helianthus annuus HOM05D001329 ORTHO05D004946 3.2e-143 513.1 490 55.9
TWI18G0587 Tripterygium wilfordii HOM05D001329 ORTHO05D004946 4.2e-143 512.7 515 53.2
PSO782G0993 Papaver somniferum HOM05D001329 ORTHO05D004946 5.5e-143 512.3 505 53.9
Nitab4.5_0004969g0080 Nicotiana tabacum HOM05D001329 ORTHO05D004946 1.6e-142 510.8 506 54.0
QL05p019057 Quercus lobata HOM05D001329 ORTHO05D004946 1.6e-142 510.8 503 54.9
Potri.001G191200 Populus trichocarpa HOM05D001329 ORTHO05D004946 2.7e-142 510.0 513 54.2
Thhalv10013055m.g Eutrema salsugineum HOM05D001329 ORTHO05D004946 1.3e-141 507.7 504 52.6
arahy.Tifrunner.gnm1.ann1.KL0FMA Arachis hypogaea HOM05D001329 ORTHO05D002618 2.3e-141 506.9 506 53.4
PSO478G0947 Papaver somniferum HOM05D001329 ORTHO05D004946 2.3e-141 506.9 510 53.5
Nitab4.5_0005085g0040 Nicotiana tabacum HOM05D001329 ORTHO05D004946 3.0e-141 506.5 506 53.8
Ciclev10025165m.g Citrus clementina HOM05D001329 ORTHO05D004946 8.7e-141 505.0 564 49.5
Medtr8g014670 Medicago truncatula HOM05D001329 ORTHO05D004946 8.7e-141 505.0 503 53.3
PGR102G1644 Punica granatum HOM05D001329 ORTHO05D004946 1.5e-140 504.2 527 52.2
Manes.11G031600 Manihot esculenta HOM05D001329 ORTHO05D004946 3.3e-140 503.1 515 52.4
Thecc.06G102200 Theobroma cacao HOM05D001329 ORTHO05D004946 3.3e-140 503.1 505 54.5
Lsat_1_v5_gn_4_98041 Lactuca sativa HOM05D001329 ORTHO05D004946 4.3e-140 502.7 494 54.7
ECA232G1252 Erigeron canadensis HOM05D001329 ORTHO05D004946 7.4e-140 501.9 507 53.6
CAN.G1143.24 Capsicum annuum HOM05D001329 ORTHO05D004946 9.7e-140 501.5 528 51.7
Eucgr.J02692 Eucalyptus grandis HOM05D001329 ORTHO05D004946 1.3e-139 501.1 513 53.2
Psat4g196800 Pisum sativum HOM05D001329 ORTHO05D004946 1.3e-139 501.1 504 53.4
TPR.G15143 Trifolium pratense HOM05D001329 ORTHO05D004946 1.6e-139 500.7 504 54.2
Eucgr.J02926 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.8e-139 500.0 513 52.8
Duzib235G0146 Durio zibethinus HOM05D001329 ORTHO05D004946 6.3e-139 498.8 516 54.1
Lalb_Chr04g0263001 Lupinus albus HOM05D001329 ORTHO05D004946 8.2e-139 498.4 526 51.0
FvH4_6g32620 Fragaria vesca HOM05D001329 ORTHO05D004946 1.1e-138 498.0 522 51.5
PGSC0003DMG400002521 Solanum tuberosum HOM05D001329 ORTHO05D004946 1.1e-138 498.0 500 53.2
Sopen03g039950 Solanum pennellii HOM05D001329 ORTHO05D004946 4.1e-138 496.1 499 53.3
Ah.01g017270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 9.0e-138 495.0 511 51.7
Sed0006591 Sechium edule HOM05D001329 ORTHO05D004946 1.2e-137 494.6 513 53.0
Solyc03g121120.4 Solanum lycopersicum HOM05D001329 ORTHO05D004946 1.2e-137 494.6 499 53.1
Gorai.011G070300 Gossypium raimondii HOM05D001329 ORTHO05D004946 1.5e-137 494.2 525 52.8
BcaB01g02899 Brassica carinata HOM05D001329 ORTHO05D004946 2.0e-137 493.8 506 53.2
arahy.Tifrunner.gnm1.ann1.B6KHKZ Arachis hypogaea HOM05D001329 ORTHO05D002618 2.6e-137 493.4 485 54.0
Os06g0151600 Oryza sativa ssp. japonica HOM05D001329 ORTHO05D004946 1.0e-136 491.5 519 50.9
Glyma.08G199700 Glycine max HOM05D001329 ORTHO05D004946 1.3e-136 491.1 514 51.6
Sc12g0010100 Simmondsia chinensis HOM05D001329 ORTHO05D004946 1.3e-136 491.1 538 50.9
Phvul.010G143800 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 2.2e-136 490.3 517 52.4
Migut.I00963 Erythranthe guttata HOM05D001329 ORTHO05D004946 2.9e-136 490.0 521 51.2
CsaV3_3G023430 Cucumis sativus L. HOM05D001329 ORTHO05D004946 5.0e-136 489.2 535 50.8
VMungo0331G1514 Vigna mungo HOM05D001329 ORTHO05D004946 5.0e-136 489.2 503 52.3
Ca_23279_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 8.5e-136 488.4 505 53.9
ClCG07G013420 Citrullus lanatus HOM05D001329 ORTHO05D004946 8.5e-136 488.4 536 51.3
EL10Ac9g21183 Beta vulgaris HOM05D001329 ORTHO05D004946 1.4e-135 487.6 551 50.1
ClCG07G013460 Citrullus lanatus HOM05D001329 ORTHO05D004946 1.9e-135 487.3 535 50.8
Prupe.3G056500 Prunus persica HOM05D001329 ORTHO05D004946 3.2e-135 486.5 487 54.0
vmacro18841 Vaccinium macrocarpon HOM05D001329 ORTHO05D004946 1.0e-133 481.5 541 50.6
RcHm_v2.0_Chr2g0141101 Rosa chinensis HOM05D001329 ORTHO05D004946 5.1e-133 479.2 543 49.5
COL.COLO4_30535 Corchorus olitorius HOM05D001329 ORTHO05D004946 2.5e-132 476.9 484 52.7
Lalb_Chr24g0396201 Lupinus albus HOM05D001329 ORTHO05D004946 5.7e-132 475.7 531 49.7
unitig_88.g27600 Utricularia gibba HOM05D001329 ORTHO05D004946 5.7e-132 475.7 537 49.5
CiPaw.01G230000 Carya illinoinensis HOM05D001329 ORTHO05D004946 3.7e-131 473.0 505 52.3
MELO3C013011.2 Cucumis melo HOM05D001329 ORTHO05D004946 8.2e-131 471.9 543 49.5
AagrBONN_evm.TU.Sc2ySwM_340.358 Anthoceros agrestis HOM05D001329 ORTHO05D004946 4.1e-130 469.5 386 67.4
Rhsim08G0228700 Rhododendron simsii HOM05D001329 ORTHO05D004946 6.9e-130 468.8 597 46.6
Gohir.A10G064700 Gossypium hirsutum HOM05D001329 ORTHO05D004946 3.4e-129 466.5 514 51.2
Glyma.15G021000 Glycine max HOM05D001329 ORTHO05D004946 1.3e-128 464.5 504 49.8
AUR62031953 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.1e-127 461.5 589 45.5
arahy.Tifrunner.gnm1.ann1.V5Z0HR Arachis hypogaea HOM05D001329 ORTHO05D004946 9.4e-127 458.4 505 50.3
TPR.G6578 Trifolium pratense HOM05D001329 ORTHO05D004946 9.4e-127 458.4 507 49.7
VMungo1080G1498 Vigna mungo HOM05D001329 ORTHO05D004946 9.4e-127 458.4 505 48.5
Lj3g0004043 Lotus japonicus HOM05D001329 ORTHO05D004946 1.2e-126 458.0 519 48.7
Sabra01G0150400 Salix brachista HOM05D001329 ORTHO05D004946 1.6e-126 457.6 581 46.6
Phvul.005G165000 Phaseolus vulgaris HOM05D001329 ORTHO05D004946 2.0e-124 450.7 503 48.1
SEGI_18109 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 2.6e-124 450.3 382 62.0
Medtr2g100640 Medicago truncatula HOM05D001329 ORTHO05D004946 3.3e-124 449.9 508 49.0
Dinv30424 Davidia involucrata HOM05D001329 ORTHO05D004946 5.7e-124 449.1 465 54.6
Lj3g0020598 Lotus japonicus HOM05D001329 ORTHO05D004946 1.3e-123 448.0 391 59.6
SalBow2G1072 Salvia bowleyana HOM05D001329 ORTHO05D004946 2.8e-123 446.8 532 48.3
FAN05G0851 Fragaria x ananassa HOM05D001329 ORTHO05D004946 4.8e-123 446.0 574 46.5
GSVIVG01016953001 Vitis vinifera HOM05D001329 ORTHO05D004946 3.2e-119 433.3 507 49.9
SGA_v2.0_scaffold265G46056 Striga asiatica HOM05D001329 ORTHO05D004946 3.6e-118 429.9 534 46.8
SGA_v2.0_scaffold45G16999 Striga asiatica HOM05D001329 ORTHO05D004946 6.1e-118 429.1 490 49.4
Hund07630 Selenicereus undatus HOM05D001329 ORTHO05D004946 8.0e-118 428.7 512 47.3
MCO02G474 Micromonas commoda HOM05D001329 ORTHO05D004946 1.1e-116 424.9 507 49.7
Gohir.D10G066200 Gossypium hirsutum HOM05D001329 ORTHO05D004946 2.9e-112 410.2 390 56.4
Ca_01173_v3 Cicer arietinum L. HOM05D001329 ORTHO05D004946 3.8e-112 409.8 506 46.2
DCAR_007591 Daucus carota HOM05D001329 ORTHO05D004946 1.5e-111 407.9 432 52.1
Lj9C514G19 Lonicera japonica HOM05D001329 ORTHO05D004946 3.0e-109 400.2 415 54.0
FAN14G3013 Fragaria x ananassa HOM05D001329 ORTHO05D004946 1.0e-101 375.2 544 42.6
Zm00001eb270700 Zea mays HOM05D001329 ORTHO05D004946 2.3e-101 374.0 381 53.8
Psat5g295200 Pisum sativum HOM05D001329 ORTHO05D004946 3.0e-101 373.6 483 46.2
PRCOL_00001245 Prasinoderma coloniale HOM05D001329 ORTHO05D004946 1.1e-98 365.2 570 43.0
AUR62022239 Chenopodium quinoa HOM05D001329 ORTHO05D004946 5.4e-98 362.8 504 42.7
Actinidia32112 Actinidia chinensis HOM05D001329 ORTHO05D004946 2.8e-94 350.5 293 60.8
VMungo1080G0220 Vigna mungo HOM05D001329 ORTHO05D004946 1.3e-91 341.7 401 46.4
Atru.chr1.3485 Acer truncatum HOM05D001329 ORTHO05D004946 1.5e-87 328.2 302 57.6
AUR62022260 Chenopodium quinoa HOM05D001329 ORTHO05D004946 1.6e-86 324.7 376 50.3
CDE02G2442 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 1.1e-79 302.0 324 52.2
Cre07.g317908 Chlamydomonas reinhardtii HOM05D001329 ORTHO05D004946 4.4e-76 290.0 629 35.0
arahy.Tifrunner.gnm1.ann1.VU8J7C Arachis hypogaea HOM05D001329 ORTHO05D004946 1.7e-72 278.1 476 39.5
Cpa.g.sc25.37 Carica papaya HOM05D001329 ORTHO05D004946 2.1e-70 271.2 195 70.8
Psat5g239480 Pisum sativum HOM05D001329 ORTHO05D004946 2.3e-69 267.7 328 48.8
SMO173G0075 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.6e-68 262.7 264 54.2
Ah.16g103270 Amaranthus hybridus HOM05D001329 ORTHO05D004946 6.4e-67 259.6 265 52.1
CARHR258160 Cardamine hirsuta HOM05D001329 ORTHO05D004946 5.4e-66 256.5 280 49.3
CSS0049032 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.5e-63 247.7 283 49.5
CSS0007570 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 6.2e-62 243.0 289 47.4
SMO173G0086 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 6.2e-62 243.0 247 53.4
SMO173G0029 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 1.8e-61 241.5 245 53.9
HPP92_003950 Vanilla planifolia HOM05D001329 ORTHO05D004946 3.3e-55 220.7 256 46.9
CSS0047870 Camellia sinensis var. sinensis HOM05D001329 ORTHO05D004946 2.0e-52 211.5 267 45.7
Haze_15870 Corylus avellana HOM05D001329 ORTHO05D004946 1.7e-51 208.4 280 46.8
Haze_15874 Corylus avellana HOM05D001329 ORTHO05D004946 1.7e-51 208.4 280 46.8
SMO146G0193 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 5.1e-48 196.8 260 46.5
SHI11143 Sapria himalayana HOM05D000023 ORTHO05D000014 3.3e-47 194.1 341 39.3
RcHm_v2.0_Chr2g0141091 Rosa chinensis HOM05D001329 ORTHO05D004946 4.3e-47 193.7 227 50.2
SMO173G0090 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 2.1e-46 191.4 237 48.9
AL58U10020 Arabidopsis lyrata HOM05D001329 ORTHO05D004946 9.9e-44 182.6 190 51.1
CANSAT56G4024 Cannabis sativa HOM05D001329 ORTHO05D004946 2.9e-43 181.0 192 49.5
Actinidia21724 Actinidia chinensis HOM05D001329 ORTHO05D004946 4.2e-42 177.2 232 43.5
Lsat_1_v5_gn_1_63401 Lactuca sativa HOM05D001329 ORTHO05D004946 1.5e-39 168.7 147 63.3
Oeu063750.1 Olea europaea HOM05D001329 ORTHO05D004946 3.7e-38 164.1 119 69.7
CDE02G0018 Ceratophyllum demersum HOM05D001329 ORTHO05D004946 6.9e-37 159.8 168 49.4
CANSAT56G3773 Cannabis sativa HOM05D001329 ORTHO05D004946 5.8e-36 156.8 157 51.6
Lsat_1_v5_gn_9_94461 Lactuca sativa HOM05D001329 ORTHO05D004946 2.2e-35 154.8 125 65.6
Haze_15873 Corylus avellana HOM05D001329 ORTHO05D004946 1.0e-32 146.0 160 51.2
SEGI_08653 Sequoiadendron giganteum HOM05D001329 ORTHO05D004946 3.9e-32 144.1 181 47.0
Haze_15869 Corylus avellana HOM05D001329 ORTHO05D004946 1.4e-21 109.0 153 43.8
Psat5g295400 Pisum sativum HOM05D001329 ORTHO05D004946 5.5e-18 97.1 155 39.4
PSO675G5297 Papaver somniferum HOM05D001329 ORTHO05D004946 6.1e-17 93.6 123 42.3
SMO173G0016 Selaginella moellendorffii HOM05D001329 ORTHO05D004946 7.9e-17 93.2 70 61.4
Glyma.13G353300 Glycine max HOM05D001329 ORTHO05D004946 1.0e-16 92.8 119 47.9
PGR102G0501 Punica granatum HOM05D001329 ORTHO05D004946 1.0e-11 76.3 65 61.5
Eucgr.G00548 Eucalyptus grandis HOM05D001329 ORTHO05D004946 2.2e-11 75.1 59 67.8
SMO173G0061 Selaginella moellendorffii HOM05D001549 ORTHO05D003098 5.0e-11 73.9 49 67.3
Gohir.A05G129875 Gossypium hirsutum HOM05D001329 ORTHO05D004946 1.9e-10 72.0 70 52.9
Cpa.g.sc2949.1 Carica papaya HOM05D001329 ORTHO05D004946 5.5e-10 70.5 50 66.0
SHI11148 Sapria himalayana HOM05D000105 ORTHO05D000023 2.7e-09 68.2 114 41.2
arahy.Tifrunner.gnm1.ann1.3W2ZUL Arachis hypogaea HOM05D001329 ORTHO05D010271 6.1e-09 67.0 106 42.5
Cpa.g.sc25.35 Carica papaya HOM05D001329 ORTHO05D004946 8.8e-08 63.2 157 28.0
arahy.Tifrunner.gnm1.ann1.4Z5MNN Arachis hypogaea HOM05D001329 ORTHO05D004946 1.7e-06 58.9 53 52.8


User provided reference genes

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