Interactive Phylogenetics Module

Contact Settings

If more than 50 genes/sequences are provided as input, then the associated running time can take some time.
Therefore it is advisable to provide an email-address in case you are running the Interactive Phylogenetics Module with more than 50 genes.
After processing you will be send an email with a link to the created phylogenetic tree.

Data Settings

Reference genes from current instance

The selection modi are exclusive: please choose either Gene selection or Species selection.

Include Gene ID Species Homologous gene family Orthologous gene family E-value Bitscore Alignment Length Identity Percentage
Mapoly0008s0082 Marchantia polymorpha HOM05D006853 ORTHO05D008906 5.2e-159 564.3 281 100.0
Pp3c1_39830 Physcomitrium patens HOM05D006853 ORTHO05D008906 1.4e-58 230.7 282 44.3
SMO164G0046 Selaginella moellendorffii HOM05D006853 ORTHO05D008906 2.6e-41 173.3 284 37.7
SEGI_13208 Sequoiadendron giganteum HOM05D006853 ORTHO05D008906 3.7e-40 169.5 253 40.3
AagrBONN_evm.TU.Sc2ySwM_368.2648 Anthoceros agrestis HOM05D006853 ORTHO05D008906 2.4e-39 166.8 257 38.1
BcaB07g30269 Brassica carinata HOM05D006853 ORTHO05D008906 2.6e-33 146.7 269 35.7
CARHR146460 Cardamine hirsuta HOM05D006853 ORTHO05D008906 6.4e-32 142.1 261 36.0
C02p52120 Brassica napus HOM05D006853 ORTHO05D008906 1.1e-31 141.4 276 35.1
BolC2t11296H Brassica oleracea HOM05D006853 ORTHO05D008906 1.1e-31 141.4 276 35.1
PGR102G0342 Punica granatum HOM05D006853 ORTHO05D008906 4.1e-31 139.4 250 37.2
BcaB07g30639 Brassica carinata HOM05D006853 ORTHO05D008906 7.1e-31 138.7 264 34.5
BcaC03g17267 Brassica carinata HOM05D006853 ORTHO05D008906 9.2e-31 138.3 274 35.0
BcaC03g17268 Brassica carinata HOM05D006853 ORTHO05D008906 9.2e-31 138.3 274 35.0
Thhalv10004778m.g Eutrema salsugineum HOM05D006853 ORTHO05D008906 1.2e-30 137.9 272 33.8
Aqoxy5G01341 Aquilegia oxysepala HOM05D006853 ORTHO05D008906 3.5e-30 136.3 250 35.2
Hund25134 Selenicereus undatus HOM05D006853 ORTHO05D008906 1.7e-29 134.0 249 37.8
Sp2g14810 Schrenkiella parvula HOM05D006853 ORTHO05D008906 3.9e-29 132.9 272 32.4
Carub.0005s0328 Capsella rubella HOM05D006853 ORTHO05D008906 6.6e-29 132.1 250 33.2
MELO3C005171.2 Cucumis melo HOM05D006853 ORTHO05D008906 4.3e-28 129.4 244 35.7
ClCG01G007410 Citrullus lanatus HOM05D006853 ORTHO05D008906 9.6e-28 128.3 247 35.2
AL5G14010 Arabidopsis lyrata HOM05D006853 ORTHO05D008906 1.2e-27 127.9 264 33.3
CiPaw.06G096100 Carya illinoinensis HOM05D006853 ORTHO05D008906 1.2e-27 127.9 245 36.7
Cpa.g.sc53.10 Carica papaya HOM05D006853 ORTHO05D008906 2.1e-27 127.1 249 34.1
Cc11_g11200 Coffea canephora HOM05D006853 ORTHO05D008906 2.1e-27 127.1 274 34.7
SalBow8G0220 Salvia bowleyana HOM05D006853 ORTHO05D008906 2.1e-27 127.1 247 34.0
SalBow8G1387 Salvia bowleyana HOM05D006853 ORTHO05D008906 2.1e-27 127.1 248 34.3
AT3G25545 Arabidopsis thaliana HOM05D006853 ORTHO05D008906 2.8e-27 126.7 264 33.3
CsaV3_5G018880 Cucumis sativus L. HOM05D006853 ORTHO05D008906 2.8e-27 126.7 244 34.8
Sed0015072 Sechium edule HOM05D006853 ORTHO05D008906 2.8e-27 126.7 279 33.7
Ciclev10032464m.g Citrus clementina HOM05D006853 ORTHO05D008906 6.2e-27 125.6 230 36.5
Lsat_1_v5_gn_8_37640 Lactuca sativa HOM05D006853 ORTHO05D008906 6.2e-27 125.6 243 34.6
Nitab4.5_0010998g0020 Nicotiana tabacum HOM05D006853 ORTHO05D008906 6.2e-27 125.6 251 35.9
Lj6P771T55 Lonicera japonica HOM05D006853 ORTHO05D008906 8.1e-27 125.2 280 33.9
THA.LOC104801842 Tarenaya hassleriana HOM05D006853 ORTHO05D008906 1.1e-26 124.8 250 32.8
Actinidia31918 Actinidia chinensis HOM05D006853 ORTHO05D006634 1.4e-26 124.4 247 34.8
Ah.02g127470 Amaranthus hybridus HOM05D001046 ORTHO05D002934 1.8e-26 124.0 244 36.5
Rhsim09G0117300 Rhododendron simsii HOM05D006853 ORTHO05D008906 1.8e-26 124.0 251 35.5
Aa31LG2G6790 Aethionema arabicum HOM05D006853 ORTHO05D008906 2.4e-26 123.6 271 31.7
AUR62007823 Chenopodium quinoa HOM05D006853 ORTHO05D008906 2.4e-26 123.6 244 34.4
CSS0047872 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 4.0e-26 122.9 246 35.4
Peaxi162Scf00188g00063 Petunia axillaris HOM05D006853 ORTHO05D008906 9.0e-26 121.7 271 32.8
Gohir.A03G107900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 1.2e-25 121.3 250 36.4
Nitab4.5_0000027g0460 Nicotiana tabacum HOM05D006853 ORTHO05D008906 1.2e-25 121.3 230 37.4
ECA233G2927 Erigeron canadensis HOM05D006853 ORTHO05D006634 1.5e-25 120.9 244 33.2
Haze_23238 Corylus avellana HOM05D006853 ORTHO05D008906 2.0e-25 120.6 230 34.3
Thecc.02G317700 Theobroma cacao HOM05D006853 ORTHO05D008906 2.0e-25 120.6 250 35.2
CAN.G184.17 Capsicum annuum HOM05D006853 ORTHO05D008906 2.6e-25 120.2 280 32.9
PGSC0003DMG400025119 Solanum tuberosum HOM05D006853 ORTHO05D008906 2.6e-25 120.2 232 35.8
Gohir.D02G132900 Gossypium hirsutum HOM05D006853 ORTHO05D008906 3.4e-25 119.8 250 36.4
Eucgr.B03092 Eucalyptus grandis HOM05D006853 ORTHO05D008906 5.8e-25 119.0 251 36.3
Solyc05g010290.3 Solanum lycopersicum HOM05D006853 ORTHO05D008906 5.8e-25 119.0 282 31.6
HanXRQChr08g0214781 Helianthus annuus HOM05D006853 ORTHO05D008906 7.6e-25 118.6 230 33.9
QL03p047845 Quercus lobata HOM05D006853 ORTHO05D008906 9.9e-25 118.2 251 35.5
Oeu024136.2 Olea europaea HOM05D006853 ORTHO05D008906 1.7e-24 117.5 228 36.8
Sc11g0002760 Simmondsia chinensis HOM05D006853 ORTHO05D008906 1.7e-24 117.5 245 33.1
Sopen05g006060 Solanum pennellii HOM05D006853 ORTHO05D008906 1.7e-24 117.5 282 31.9
HanXRQChr15g0469081 Helianthus annuus HOM05D006853 ORTHO05D008906 2.2e-24 117.1 229 34.1
Duzib268G1722 Durio zibethinus HOM05D006853 ORTHO05D008906 2.9e-24 116.7 250 35.6
TWI31G0390 Tripterygium wilfordii HOM05D006853 ORTHO05D008906 2.9e-24 116.7 245 34.7
MSTRG.7709 Avicennia marina HOM05D006853 ORTHO05D008906 3.8e-24 116.3 223 35.4
CANSAT64G2393 Cannabis sativa HOM05D006853 ORTHO05D008906 3.8e-24 116.3 249 34.5
COL.COLO4_27747 Corchorus olitorius HOM05D006853 ORTHO05D008906 3.8e-24 116.3 245 33.9
Migut.L01132 Erythranthe guttata HOM05D006853 ORTHO05D006634 3.8e-24 116.3 232 37.1
Potri.010G134600 Populus trichocarpa HOM05D006853 ORTHO05D008906 4.9e-24 115.9 249 34.1
Manes.06G077700 Manihot esculenta HOM05D006853 ORTHO05D008906 6.4e-24 115.5 244 33.6
Atru.chr11.1459 Acer truncatum HOM05D006853 ORTHO05D008906 8.4e-24 115.2 249 34.5
Atru.chr11.1493 Acer truncatum HOM05D006853 ORTHO05D008906 8.4e-24 115.2 249 34.5
Cfa009867 Carpinus fangiana HOM05D006853 ORTHO05D008906 8.4e-24 115.2 230 33.0
Potri.008G110700 Populus trichocarpa HOM05D006853 ORTHO05D008906 1.4e-23 114.4 248 35.1
Oeu054577.1 Olea europaea HOM05D006853 ORTHO05D008906 1.9e-23 114.0 231 35.5
ATR0721G025 Amborella trichopoda HOM05D006853 ORTHO05D008906 4.2e-23 112.8 245 31.4
Oeu054573.1 Olea europaea HOM05D006853 ORTHO05D008906 4.2e-23 112.8 231 35.1
Oeu054575.1 Olea europaea HOM05D006853 ORTHO05D008906 4.2e-23 112.8 231 35.1
FvH4_4g28700 Fragaria vesca HOM05D006853 ORTHO05D008906 5.4e-23 112.5 249 32.1
FAN12G0570 Fragaria x ananassa HOM05D006853 ORTHO05D008906 5.4e-23 112.5 249 32.1
A02p33840 Brassica napus HOM05D006853 ORTHO05D008906 7.1e-23 112.1 274 30.7
Sabra10G0103400 Salix brachista HOM05D006853 ORTHO05D008906 7.1e-23 112.1 230 34.3
CSS0003455 Camellia sinensis var. sinensis HOM05D006853 ORTHO05D008906 9.3e-23 111.7 245 33.1
RcHm_v2.0_Chr4g0436821 Rosa chinensis HOM05D006853 ORTHO05D008906 9.3e-23 111.7 257 31.1
BraA02t08402Z Brassica rapa HOM05D006853 ORTHO05D008906 1.2e-22 111.3 274 30.7
FAN07G1226 Fragaria x ananassa HOM05D006853 ORTHO05D006634 1.6e-22 110.9 249 32.1
SGA_v2.0_scaffold16G07849 Striga asiatica HOM05D006853 ORTHO05D008906 1.6e-22 110.9 230 35.7
MD13G1053100 Malus domestica HOM05D006853 ORTHO05D008906 2.1e-22 110.5 233 32.2
PSO541G5551 Papaver somniferum HOM05D006853 ORTHO05D008906 2.7e-22 110.2 252 32.5
Hma1.2p1_0762F.1_g214380 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 1.0e-21 108.2 235 33.2
Nn7g37287 Nelumbo nucifera HOM05D006853 ORTHO05D008906 1.0e-21 108.2 247 32.4
TAR624G1108 Trochodendron aralioides HOM05D006853 ORTHO05D008906 1.0e-21 108.2 232 34.1
PSO675G5986 Papaver somniferum HOM05D006853 ORTHO05D008906 8.7e-21 105.1 252 31.7
MD16G1052100 Malus domestica HOM05D006853 ORTHO05D008906 1.1e-20 104.8 233 32.6
Prupe.1G299000 Prunus persica HOM05D006853 ORTHO05D006634 4.3e-20 102.8 254 31.1
SHI15728 Sapria himalayana HOM05D006853 ORTHO05D008906 4.3e-20 102.8 254 31.1
Actinidia30174 Actinidia chinensis HOM05D006853 ORTHO05D008906 9.6e-20 101.7 188 35.6
Dinv16569 Davidia involucrata HOM05D000044 ORTHO05D006634 6.2e-19 99.0 188 33.0
HPP92_020023 Vanilla planifolia HOM05D006853 ORTHO05D008906 4.0e-18 96.3 250 30.4
VMungo1215G2951 Vigna mungo HOM05D006853 ORTHO05D008906 6.9e-18 95.5 260 30.8
Medtr5g049260 Medicago truncatula HOM05D006853 ORTHO05D008906 1.2e-17 94.7 283 29.7
Medtr5g049270 Medicago truncatula HOM05D006853 ORTHO05D008906 1.2e-17 94.7 283 29.7
unitig_8.g3212 Utricularia gibba HOM05D006853 ORTHO05D008906 9.9e-17 91.7 243 31.3
Glyma.02G127200 Glycine max HOM05D006853 ORTHO05D008906 1.3e-16 91.3 283 30.4
C09p31840 Brassica napus HOM05D006853 ORTHO05D008906 6.4e-16 89.0 174 33.3
Glyma.01G070150 Glycine max HOM05D006853 ORTHO05D008906 6.4e-16 89.0 280 30.4
BcaC04g21430 Brassica carinata HOM05D006853 ORTHO05D008906 1.4e-15 87.8 174 32.8
Lj2g0007836 Lotus japonicus HOM05D000044 ORTHO05D006634 1.4e-15 87.8 235 31.9
Cre01.g037650 Chlamydomonas reinhardtii HOM05D006853 ORTHO05D008906 2.4e-15 87.0 240 28.8
Phvul.002G082000 Phaseolus vulgaris HOM05D006853 ORTHO05D008906 3.2e-15 86.7 273 27.1
arahy.Tifrunner.gnm1.ann1.N8UYM2 Arachis hypogaea HOM05D006853 ORTHO05D008906 7.1e-15 85.5 250 28.8
arahy.Tifrunner.gnm1.ann1.QR8D6Y Arachis hypogaea HOM05D006853 ORTHO05D008906 9.3e-15 85.1 254 29.9
Zm00001eb119820 Zea mays HOM05D006853 ORTHO05D008906 1.2e-14 84.7 236 29.7
Ca_05156_v3 Cicer arietinum L. HOM05D006853 ORTHO05D008906 2.1e-14 84.0 242 30.6
CDE03G0412 Ceratophyllum demersum HOM05D001926 ORTHO05D002121 1.5e-12 77.8 112 39.3
Hma1.2p1_0125F.1_g058490 Hydrangea macrophylla HOM05D006853 ORTHO05D008906 1.5e-12 77.8 199 31.7
Os01g0219000 Oryza sativa ssp. japonica HOM05D006853 ORTHO05D008906 1.9e-12 77.4 237 28.3
Lalb_Chr17g0341651 Lupinus albus HOM05D006853 ORTHO05D008906 8.1e-11 72.0 255 27.8
Psat2g098640 Pisum sativum HOM05D006853 ORTHO05D008906 1.2e-09 68.2 128 38.3
Psat1g127240 Pisum sativum HOM05D002500 ORTHO05D002587 8.4e-08 62.0 88 43.2
GSVIVG01010168001 Vitis vinifera HOM05D000044 ORTHO05D006634 9.3e-07 58.5 246 22.8
MCO12G436 Micromonas commoda HOM05D006853 ORTHO05D008906 1.2e-06 58.2 194 24.2


User provided reference genes

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